Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G33937 Trifolium pratense HOM05D003378 ORTHO05D003942 1.0e-45 186.4 95 100.0
Haze_20961 Corylus avellana HOM05D003378 ORTHO05D003942 6.8e-18 94.0 50 92.0
Ca_07617_v3 Cicer arietinum L. HOM05D003378 ORTHO05D003942 3.4e-17 91.7 55 87.3
Medtr7g067340 Medicago truncatula HOM05D003378 ORTHO05D003942 3.4e-17 91.7 55 87.3
TPR.G1566 Trifolium pratense HOM05D003378 ORTHO05D003942 3.4e-17 91.7 55 87.3
Lj1g0014660 Lotus japonicus HOM05D003378 ORTHO05D003942 4.4e-17 91.3 55 85.5
Zm00001eb297970 Zea mays HOM05D003378 ORTHO05D003942 4.4e-17 91.3 55 85.5
Duzib128G1405 Durio zibethinus HOM05D003378 ORTHO05D003942 5.7e-17 90.9 56 82.1
Os07g0100300 Oryza sativa ssp. japonica HOM05D003378 ORTHO05D003942 9.8e-17 90.1 55 83.6
Manes.08G089250 Manihot esculenta HOM05D003378 ORTHO05D003942 1.3e-16 89.7 55 83.6
Nn2g11403 Nelumbo nucifera HOM05D003378 ORTHO05D003942 1.3e-16 89.7 68 72.1
Cfa017247 Carpinus fangiana HOM05D003378 ORTHO05D003942 2.2e-16 89.0 55 83.6
Thecc.05G020500 Theobroma cacao HOM05D003378 ORTHO05D003942 2.2e-16 89.0 55 81.8
MBI14_g04426_MAGBIO Magnolia biondii HOM05D003378 ORTHO05D003942 2.8e-16 88.6 55 81.8
TAR369G0131 Trochodendron aralioides HOM05D003378 ORTHO05D003942 2.8e-16 88.6 55 81.8
Duzib093G0826 Durio zibethinus HOM05D003378 ORTHO05D003942 3.7e-16 88.2 68 70.6
Ciclev10011473m.g Citrus clementina HOM05D003378 ORTHO05D003942 4.8e-16 87.8 46 93.5
Sabra06G0075100 Salix brachista HOM05D003378 ORTHO05D003942 4.8e-16 87.8 55 80.0
Duzib106G1409 Durio zibethinus HOM05D003378 ORTHO05D003942 6.3e-16 87.4 55 80.0
TWI77G0412 Tripterygium wilfordii HOM05D003378 ORTHO05D003942 6.3e-16 87.4 46 93.5
Potri.006G097600 Populus trichocarpa HOM05D003378 ORTHO05D003942 8.3e-16 87.0 55 78.2
arahy.Tifrunner.gnm1.ann1.FDLX2Z Arachis hypogaea HOM05D003378 ORTHO05D003942 1.1e-15 86.7 55 83.6
Migut.J00201 Erythranthe guttata HOM05D003378 ORTHO05D003942 1.1e-15 86.7 55 81.8
TAR623G1156 Trochodendron aralioides HOM05D003378 ORTHO05D003942 1.1e-15 86.7 46 91.3
CiPaw.09G207100 Carya illinoinensis HOM05D003378 ORTHO05D003942 1.4e-15 86.3 55 80.0
Hma1.2p1_0244F.1_g101280 Hydrangea macrophylla HOM05D003378 ORTHO05D003942 1.4e-15 86.3 46 91.3
Lj3g0001695 Lotus japonicus HOM05D003378 ORTHO05D003942 1.4e-15 86.3 55 80.0
Psat3g130760 Pisum sativum HOM05D003378 ORTHO05D003942 1.4e-15 86.3 55 83.6
Potri.016G112600 Populus trichocarpa HOM05D003378 ORTHO05D003942 1.4e-15 86.3 46 89.1
PGR031G3689 Punica granatum HOM05D003378 ORTHO05D003942 1.4e-15 86.3 55 80.0
ClCG10G021890 Citrullus lanatus HOM05D003378 ORTHO05D003942 1.8e-15 85.9 55 80.0
COL.COLO4_14573 Corchorus olitorius HOM05D003378 ORTHO05D003942 1.8e-15 85.9 55 80.0
MELO3C009186.2 Cucumis melo HOM05D003378 ORTHO05D003942 1.8e-15 85.9 55 80.0
CsaV3_3G034100 Cucumis sativus L. HOM05D003378 ORTHO05D003942 1.8e-15 85.9 55 80.0
Dinv14534 Davidia involucrata HOM05D003378 ORTHO05D003942 1.8e-15 85.9 46 89.1
Gohir.D01G215500 Gossypium hirsutum HOM05D003378 ORTHO05D003942 1.8e-15 85.9 55 80.0
Gorai.002G261700 Gossypium raimondii HOM05D003378 ORTHO05D003942 1.8e-15 85.9 55 80.0
Sabra16G0108300 Salix brachista HOM05D003378 ORTHO05D003942 1.8e-15 85.9 55 78.2
Sed0023271 Sechium edule HOM05D003378 ORTHO05D003942 1.8e-15 85.9 55 80.0
GSVIVG01033998001 Vitis vinifera HOM05D003378 ORTHO05D003942 1.8e-15 85.9 46 91.3
Atru.chr8.2207 Acer truncatum HOM05D003378 ORTHO05D003942 2.4e-15 85.5 55 80.0
Gohir.A01G225800 Gossypium hirsutum HOM05D003378 ORTHO05D003942 2.4e-15 85.5 55 78.2
Actinidia29123 Actinidia chinensis HOM05D003378 ORTHO05D003942 3.1e-15 85.1 55 78.2
Aqoxy2G00958 Aquilegia oxysepala HOM05D003378 ORTHO05D003942 3.1e-15 85.1 46 89.1
Dinv37075 Davidia involucrata HOM05D003378 ORTHO05D003942 3.1e-15 85.1 55 78.2
TPR.G15969 Trifolium pratense HOM05D003378 ORTHO05D003942 3.1e-15 85.1 55 78.2
ATR0618G034 Amborella trichopoda HOM05D003378 ORTHO05D003942 4.1e-15 84.7 55 78.2
CiPaw.10G154700 Carya illinoinensis HOM05D003378 ORTHO05D003942 4.1e-15 84.7 55 80.0
Cpa.g.sc163.3 Carica papaya HOM05D003378 ORTHO05D003942 5.4e-15 84.3 55 76.4
Cc06_g01590 Coffea canephora HOM05D003378 ORTHO05D003942 5.4e-15 84.3 46 87.0
Lj2C81T6 Lonicera japonica HOM05D003378 ORTHO05D003942 5.4e-15 84.3 55 78.2
Oeu015017.1 Olea europaea HOM05D003378 ORTHO05D003942 7.0e-15 84.0 46 87.0
Oeu030526.1 Olea europaea HOM05D003378 ORTHO05D003942 7.0e-15 84.0 46 87.0
SalBow4G2524 Salvia bowleyana HOM05D003378 ORTHO05D003942 7.0e-15 84.0 46 89.1
Medtr4g015260 Medicago truncatula HOM05D003378 ORTHO05D003942 9.1e-15 83.6 55 76.4
Sc01g0006660 Simmondsia chinensis HOM05D003378 ORTHO05D003942 9.1e-15 83.6 46 87.0
SGA_v2.0_scaffold85G26755 Striga asiatica HOM05D003378 ORTHO05D003942 9.1e-15 83.6 46 87.0
CSS0025489 Camellia sinensis var. sinensis HOM05D003378 ORTHO05D003942 1.2e-14 83.2 55 76.4
CSS0046394 Camellia sinensis var. sinensis HOM05D003378 ORTHO05D003942 1.2e-14 83.2 55 76.4
Ca_20313_v3 Cicer arietinum L. HOM05D003378 ORTHO05D003942 1.2e-14 83.2 55 76.4
Gohir.A04G088800 Gossypium hirsutum HOM05D003378 ORTHO05D003942 1.2e-14 83.2 55 76.4
Gohir.D04G129200 Gossypium hirsutum HOM05D003378 ORTHO05D003942 1.2e-14 83.2 55 76.4
HanXRQChr10g0287061 Helianthus annuus HOM05D003378 ORTHO05D003942 1.2e-14 83.2 55 78.2
ECA247G2610 Erigeron canadensis HOM05D003378 ORTHO05D003942 1.6e-14 82.8 55 78.2
Lsat_1_v5_gn_9_36000 Lactuca sativa HOM05D003378 ORTHO05D003942 1.6e-14 82.8 55 76.4
Actinidia13774 Actinidia chinensis HOM05D003378 ORTHO05D003942 2.0e-14 82.4 55 76.4
Psat7g247920 Pisum sativum HOM05D003378 ORTHO05D003942 2.0e-14 82.4 55 76.4
Sed0002007 Sechium edule HOM05D003378 ORTHO05D003942 2.0e-14 82.4 55 76.4
Ah.02g114930 Amaranthus hybridus HOM05D003378 ORTHO05D003942 2.7e-14 82.0 46 87.0
CAN.G1297.6 Capsicum annuum HOM05D003378 ORTHO05D003942 2.7e-14 82.0 55 76.4
Glyma.07G146400 Glycine max HOM05D003378 ORTHO05D003942 2.7e-14 82.0 55 78.2
Glyma.18G197600 Glycine max HOM05D003378 ORTHO05D003942 2.7e-14 82.0 55 78.2
Phvul.008G106900 Phaseolus vulgaris HOM05D003378 ORTHO05D003942 2.7e-14 82.0 55 78.2
HPP92_012629 Vanilla planifolia HOM05D003378 ORTHO05D003942 2.7e-14 82.0 55 76.4
Manes.09G103000 Manihot esculenta HOM05D003378 ORTHO05D003942 3.5e-14 81.6 45 86.7
arahy.Tifrunner.gnm1.ann1.YIK7D0 Arachis hypogaea HOM05D003378 ORTHO05D003942 4.5e-14 81.3 55 76.4
AUR62020689 Chenopodium quinoa HOM05D003378 ORTHO05D003942 4.5e-14 81.3 46 87.0
AUR62025812 Chenopodium quinoa HOM05D003378 ORTHO05D003942 4.5e-14 81.3 46 87.0
Lalb_Chr03g0043071 Lupinus albus HOM05D003378 ORTHO05D003942 4.5e-14 81.3 46 87.0
SGA_v2.0_scaffold106G30519 Striga asiatica HOM05D003378 ORTHO05D003942 4.5e-14 81.3 46 82.6
TPR.G20880 Trifolium pratense HOM05D003378 ORTHO05D003942 4.5e-14 81.3 51 84.3
vmacro22553 Vaccinium macrocarpon HOM05D003378 ORTHO05D003942 4.5e-14 81.3 55 74.5
VMungo0331G1068 Vigna mungo HOM05D003378 ORTHO05D003942 4.5e-14 81.3 55 76.4
Migut.L01997 Erythranthe guttata HOM05D003378 ORTHO05D003942 7.7e-14 80.5 45 84.4
SalBow4G1026 Salvia bowleyana HOM05D003378 ORTHO05D003942 7.7e-14 80.5 68 64.7
Eucgr.A00516 Eucalyptus grandis HOM05D003378 ORTHO05D003942 1.0e-13 80.1 55 72.7
Phvul.010G005100 Phaseolus vulgaris HOM05D003378 ORTHO05D003942 1.0e-13 80.1 55 74.5
Solyc10g085100.2 Solanum lycopersicum HOM05D003378 ORTHO05D003942 1.0e-13 80.1 55 72.7
Sopen10g034560 Solanum pennellii HOM05D003378 ORTHO05D003942 1.0e-13 80.1 55 72.7
PGSC0003DMG400011091 Solanum tuberosum HOM05D003378 ORTHO05D003942 1.0e-13 80.1 55 72.7
Nitab4.5_0000652g0220 Nicotiana tabacum HOM05D003378 ORTHO05D003942 1.3e-13 79.7 55 72.7
Nitab4.5_0004912g0010 Nicotiana tabacum HOM05D003378 ORTHO05D003942 1.3e-13 79.7 55 72.7
CANSAT35G1853 Cannabis sativa HOM05D003378 ORTHO05D003942 1.7e-13 79.3 46 84.8
FvH4_6g11930 Fragaria vesca HOM05D003378 ORTHO05D003942 2.9e-13 78.6 46 82.6
FAN02G2254 Fragaria x ananassa HOM05D003378 ORTHO05D003942 2.9e-13 78.6 46 82.6
FAN05G4401 Fragaria x ananassa HOM05D003378 ORTHO05D003942 2.9e-13 78.6 46 82.6
FAN09G0987 Fragaria x ananassa HOM05D003378 ORTHO05D003942 2.9e-13 78.6 46 82.6
FAN14G4021 Fragaria x ananassa HOM05D003378 ORTHO05D003942 2.9e-13 78.6 46 82.6
FAN14G4776 Fragaria x ananassa HOM05D003378 ORTHO05D003942 2.9e-13 78.6 46 82.6
Lalb_Chr07g0193451 Lupinus albus HOM05D003378 ORTHO05D003942 2.9e-13 78.6 46 82.6
Solyc09g014300.3 Solanum lycopersicum HOM05D003378 ORTHO05D003942 2.9e-13 78.6 55 70.9
Sopen09g007150 Solanum pennellii HOM05D003378 ORTHO05D003942 2.9e-13 78.6 55 70.9
Glyma.01G113000 Glycine max HOM05D003378 ORTHO05D003942 3.8e-13 78.2 46 82.6
Glyma.03G078300 Glycine max HOM05D003378 ORTHO05D003942 3.8e-13 78.2 46 82.6
Peaxi162Scf00009g01921 Petunia axillaris HOM05D003378 ORTHO05D003942 3.8e-13 78.2 55 70.9
HPP92_019420 Vanilla planifolia HOM05D003378 ORTHO05D003942 3.8e-13 78.2 45 82.2
EL10Ac5g11530 Beta vulgaris HOM05D003378 ORTHO05D003942 5.0e-13 77.8 46 82.6
PGSC0003DMG400020317 Solanum tuberosum HOM05D003378 ORTHO05D003942 5.0e-13 77.8 46 80.4
MSTRG.19023 Avicennia marina HOM05D003378 ORTHO05D003942 6.5e-13 77.4 46 82.6
BcaC06g31967 Brassica carinata HOM05D003378 ORTHO05D003942 8.6e-13 77.0 47 80.9
Hund22726 Selenicereus undatus HOM05D003378 ORTHO05D003942 8.6e-13 77.0 46 80.4
CAN.G355.3 Capsicum annuum HOM05D003378 ORTHO05D003942 1.1e-12 76.6 55 69.1
PSO339G6012 Papaver somniferum HOM05D003378 ORTHO05D003942 1.1e-12 76.6 45 82.2
THA.LOC104823284 Tarenaya hassleriana HOM05D003378 ORTHO05D003942 1.1e-12 76.6 46 80.4
Aa31LG1G22850 Aethionema arabicum HOM05D003378 ORTHO05D003942 1.5e-12 76.3 46 80.4
AL6G10970 Arabidopsis lyrata HOM05D003378 ORTHO05D003942 1.5e-12 76.3 46 80.4
AT5G01220 Arabidopsis thaliana HOM05D003378 ORTHO05D003942 1.5e-12 76.3 46 80.4
Carub.0006s0067 Capsella rubella HOM05D003378 ORTHO05D003942 1.5e-12 76.3 46 80.4
CARHR211550 Cardamine hirsuta HOM05D003378 ORTHO05D003942 1.5e-12 76.3 46 80.4
THA.LOC104827042 Tarenaya hassleriana HOM05D003378 ORTHO05D003942 1.5e-12 76.3 48 75.0
MD04G1148000 Malus domestica HOM05D003378 ORTHO05D003942 1.9e-12 75.9 46 82.6
MD12G1161400 Malus domestica HOM05D003378 ORTHO05D003942 1.9e-12 75.9 46 82.6
Prupe.6G271800 Prunus persica HOM05D003378 ORTHO05D003942 1.9e-12 75.9 46 82.6
RcHm_v2.0_Chr3g0463701 Rosa chinensis HOM05D003378 ORTHO05D003942 1.9e-12 75.9 46 80.4
Peaxi162Scf00141g00615 Petunia axillaris HOM05D003378 ORTHO05D003942 2.5e-12 75.5 55 70.9
Pp3c9_8520 Physcomitrium patens HOM05D003378 ORTHO05D003942 2.5e-12 75.5 48 75.0
SEGI_03332 Sequoiadendron giganteum HOM05D003378 ORTHO05D003942 2.5e-12 75.5 54 68.5
BcaC06g31965 Brassica carinata HOM05D003378 ORTHO05D003942 3.2e-12 75.1 46 80.4
BcaNung02769 Brassica carinata HOM05D003378 ORTHO05D003942 3.2e-12 75.1 46 80.4
A10p33660 Brassica napus HOM05D003378 ORTHO05D003942 3.2e-12 75.1 46 80.4
C03p00550 Brassica napus HOM05D003378 ORTHO05D003942 3.2e-12 75.1 46 78.3
C09p74570 Brassica napus HOM05D003378 ORTHO05D003942 3.2e-12 75.1 46 80.4
BolC3t12621H Brassica oleracea HOM05D003378 ORTHO05D003942 3.2e-12 75.1 46 78.3
BolC9t60189H Brassica oleracea HOM05D003378 ORTHO05D003942 3.2e-12 75.1 46 80.4
DCAR_024027 Daucus carota HOM05D003378 ORTHO05D003942 3.2e-12 75.1 55 69.1
DCAR_028819 Daucus carota HOM05D003378 ORTHO05D003942 3.2e-12 75.1 46 80.4
ECA248G0513 Erigeron canadensis HOM05D003378 ORTHO05D003942 3.2e-12 75.1 46 78.3
Thhalv10013276m.g Eutrema salsugineum HOM05D003378 ORTHO05D003942 3.2e-12 75.1 46 80.4
Sp6g40570 Schrenkiella parvula HOM05D003378 ORTHO05D003942 3.2e-12 75.1 46 80.4
A03p00390 Brassica napus HOM05D003378 ORTHO05D003942 4.2e-12 74.7 46 78.3
BraA03t09430Z Brassica rapa HOM05D003378 ORTHO05D003942 4.2e-12 74.7 46 78.3
Lj3C956T2 Lonicera japonica HOM05D003378 ORTHO05D003942 4.2e-12 74.7 45 77.8
Pp3c15_4410 Physcomitrium patens HOM05D003378 ORTHO05D003942 5.5e-12 74.3 48 72.9
Nitab4.5_0004030g0030 Nicotiana tabacum HOM05D003378 ORTHO05D003942 7.2e-12 73.9 45 77.8
HanXRQChr11g0329601 Helianthus annuus HOM05D003378 ORTHO05D003942 9.5e-12 73.6 46 76.1
Lalb_Chr13g0291251 Lupinus albus HOM05D003378 ORTHO05D003942 9.5e-12 73.6 48 72.9
Nitab4.5_0000008g0880 Nicotiana tabacum HOM05D003378 ORTHO05D003942 9.5e-12 73.6 45 75.6
AagrBONN_evm.TU.Sc2ySwM_228.713 Anthoceros agrestis HOM05D003378 ORTHO05D003942 1.2e-11 73.2 48 75.0
SalBow5G3819 Salvia bowleyana HOM05D003378 ORTHO05D003942 1.2e-11 73.2 45 80.0
SalBow5G4142 Salvia bowleyana HOM05D003378 ORTHO05D003942 1.2e-11 73.2 45 80.0
unitig_0.g1457 Utricularia gibba HOM05D003378 ORTHO05D003942 1.2e-11 73.2 45 75.6
unitig_88.g27657 Utricularia gibba HOM05D003378 ORTHO05D003942 1.6e-11 72.8 45 75.6
Lsat_1_v5_gn_5_155081 Lactuca sativa HOM05D003378 ORTHO05D003942 2.8e-11 72.0 44 79.5
Os01g0142300 Oryza sativa ssp. japonica HOM05D003378 ORTHO05D003942 2.8e-11 72.0 44 77.3
CDE02G3708 Ceratophyllum demersum HOM05D003378 ORTHO05D003942 3.6e-11 71.6 46 76.1
PSO801G0661 Papaver somniferum HOM05D003378 ORTHO05D003942 3.6e-11 71.6 45 80.0
SMO118G0052 Selaginella moellendorffii HOM05D003378 ORTHO05D003942 4.7e-11 71.2 52 65.4
Zm00001eb335670 Zea mays HOM05D003378 ORTHO05D003942 6.1e-11 70.9 44 75.0
arahy.Tifrunner.gnm1.ann1.EK5UG7 Arachis hypogaea HOM05D003378 ORTHO05D003942 8.0e-11 70.5 82 54.9
BraA10t45397Z Brassica rapa HOM05D003378 ORTHO05D003942 1.4e-10 69.7 39 82.1
Rhsim05G0206900 Rhododendron simsii HOM05D003378 ORTHO05D003942 1.4e-10 69.7 79 54.4
Mapoly0129s0040 Marchantia polymorpha HOM05D003378 ORTHO05D003942 2.3e-10 68.9 55 63.6
Rhsim04G0166600 Rhododendron simsii HOM05D003378 ORTHO05D003942 1.5e-09 66.2 45 71.1
CBR_g3329 Chara braunii HOM05D003378 ORTHO05D003942 3.4e-09 65.1 49 59.2
vmacro08599 Vaccinium macrocarpon HOM05D003378 ORTHO05D003942 3.4e-09 65.1 45 71.1
arahy.Tifrunner.gnm1.ann1.L6AUEE Arachis hypogaea HOM05D003378 ORTHO05D003942 4.4e-09 64.7 83 49.4
Actinidia01107 Actinidia chinensis HOM05D003378 ORTHO05D003942 2.2e-08 62.4 45 62.2
Actinidia05349 Actinidia chinensis HOM05D003378 ORTHO05D003942 2.2e-08 62.4 45 62.2
Os03g0265100 Oryza sativa ssp. japonica HOM05D003378 ORTHO05D003942 9.2e-07 57.0 46 56.5
Zm00001eb011720 Zea mays HOM05D003378 ORTHO05D003942 9.2e-07 57.0 44 59.1
Zm00001eb398000 Zea mays HOM05D003378 ORTHO05D003942 2.0e-06 55.8 44 56.8


User provided reference genes

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