Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G339 Trifolium pratense HOM05D005668 ORTHO05D007082 1.8e-81 305.8 149 100.0
Glyma.01G107100 Glycine max HOM05D005668 ORTHO05D007082 9.2e-30 134.0 155 49.0
Lj3g0016116 Lotus japonicus HOM05D005668 ORTHO05D007082 7.8e-29 131.0 160 50.0
Glyma.03G073762 Glycine max HOM05D005668 ORTHO05D007082 1.0e-28 130.6 154 48.7
arahy.Tifrunner.gnm1.ann1.J12K19 Arachis hypogaea HOM05D005668 ORTHO05D007082 5.1e-28 128.3 158 46.2
arahy.Tifrunner.gnm1.ann1.WQ4JXZ Arachis hypogaea HOM05D005668 ORTHO05D007082 5.1e-28 128.3 158 46.2
Medtr4g019910 Medicago truncatula HOM05D005668 ORTHO05D007082 1.5e-27 126.7 156 43.6
Ca_07382_v3 Cicer arietinum L. HOM05D005668 ORTHO05D007082 2.1e-26 122.9 159 45.9
VMungo0540G0241 Vigna mungo HOM05D005668 ORTHO05D007082 3.6e-26 122.1 156 43.6
Lalb_Chr07g0193171 Lupinus albus HOM05D005668 ORTHO05D007082 6.2e-26 121.3 159 44.0
Phvul.006G070400 Phaseolus vulgaris HOM05D005668 ORTHO05D007082 6.4e-23 111.3 156 39.7
Psat7g240360 Pisum sativum HOM05D005668 ORTHO05D007082 8.4e-23 110.9 167 39.5
arahy.Tifrunner.gnm1.ann1.2N10NB Arachis hypogaea HOM05D005668 ORTHO05D007082 6.6e-20 101.3 142 42.3
Potri.006G093700 Populus trichocarpa HOM05D005668 ORTHO05D007082 8.1e-18 94.4 159 38.4
Potri.016G105600 Populus trichocarpa HOM05D005668 ORTHO05D007082 9.0e-17 90.9 159 36.5
Sabra06G0071200 Salix brachista HOM05D005668 ORTHO05D007082 9.0e-17 90.9 113 43.4
Manes.09G099500 Manihot esculenta HOM05D005668 ORTHO05D007082 1.2e-16 90.5 157 38.2
Psat3g035960 Pisum sativum HOM05D005668 ORTHO05D007082 1.2e-16 90.5 114 43.0
THA.LOC104823270 Tarenaya hassleriana HOM05D005668 ORTHO05D007082 1.5e-16 90.1 88 50.0
BcaC09g48059 Brassica carinata HOM05D005668 ORTHO05D007082 2.6e-16 89.4 122 42.6
TPR.G2978 Trifolium pratense HOM05D005668 ORTHO05D007082 2.6e-16 89.4 118 48.3
BraA01t04309Z Brassica rapa HOM05D005668 ORTHO05D007082 7.6e-16 87.8 123 41.5
Sp3g07630 Schrenkiella parvula HOM05D005668 ORTHO05D007082 7.6e-16 87.8 126 42.1
BcaC09g48013 Brassica carinata HOM05D005668 ORTHO05D007082 9.9e-16 87.4 124 41.1
BolC1t05468H Brassica oleracea HOM05D005668 ORTHO05D007082 9.9e-16 87.4 123 40.7
Prupe.6G267200 Prunus persica HOM05D005668 ORTHO05D007082 1.7e-15 86.7 163 32.5
CARHR083600 Cardamine hirsuta HOM05D005668 ORTHO05D007082 3.8e-15 85.5 88 48.9
MD12G1156400 Malus domestica HOM05D005668 ORTHO05D007082 3.8e-15 85.5 149 35.6
TWI77G0370 Tripterygium wilfordii HOM05D005668 ORTHO05D007082 4.9e-15 85.1 158 34.8
CANSAT35G1374 Cannabis sativa HOM05D005668 ORTHO05D007082 6.4e-15 84.7 117 41.9
RcHm_v2.0_Chr3g0464311 Rosa chinensis HOM05D005668 ORTHO05D007082 6.4e-15 84.7 101 39.6
AL3G20360 Arabidopsis lyrata HOM05D005668 ORTHO05D007082 8.4e-15 84.3 126 39.7
AT3G09250 Arabidopsis thaliana HOM05D005668 ORTHO05D007082 1.1e-14 84.0 88 47.7
Aa31LG3G1740 Aethionema arabicum HOM05D005668 ORTHO05D007082 1.9e-14 83.2 143 37.8
Carub.0003s0836 Capsella rubella HOM05D005668 ORTHO05D007082 1.9e-14 83.2 126 39.7
FvH4_6g12490 Fragaria vesca HOM05D005668 ORTHO05D007082 1.9e-14 83.2 101 40.6
FAN14G5852 Fragaria x ananassa HOM05D005668 ORTHO05D007082 1.9e-14 83.2 101 40.6
FAN02G1041 Fragaria x ananassa HOM05D005668 ORTHO05D007082 2.4e-14 82.8 101 40.6
Phvul.006G070500 Phaseolus vulgaris HOM05D005668 ORTHO05D007082 2.4e-14 82.8 158 34.8
Sed0009323 Sechium edule HOM05D005668 ORTHO05D007082 2.4e-14 82.8 156 35.3
Manes.07G057000 Manihot esculenta HOM05D005668 ORTHO05D007082 3.2e-14 82.4 117 39.3
QL07p027771 Quercus lobata HOM05D005668 ORTHO05D007082 3.2e-14 82.4 170 35.3
Thecc.05G026500 Theobroma cacao HOM05D005668 ORTHO05D007082 3.2e-14 82.4 102 42.2
Thhalv10021409m.g Eutrema salsugineum HOM05D005668 ORTHO05D007082 4.2e-14 82.0 88 48.9
FAN09G2081 Fragaria x ananassa HOM05D005668 ORTHO05D007082 4.2e-14 82.0 101 39.6
MD04G1141800 Malus domestica HOM05D005668 ORTHO05D007082 7.1e-14 81.3 104 39.4
ClCG10G021640 Citrullus lanatus HOM05D005668 ORTHO05D007082 1.6e-13 80.1 102 42.2
FAN05G5175 Fragaria x ananassa HOM05D005668 ORTHO05D007082 2.1e-13 79.7 101 39.6
PSO339G5656 Papaver somniferum HOM05D005668 ORTHO05D007082 2.1e-13 79.7 104 44.2
PSO384G2457 Papaver somniferum HOM05D005668 ORTHO05D007082 2.1e-13 79.7 104 44.2
TAR633G1417 Trochodendron aralioides HOM05D005668 ORTHO05D007082 3.5e-13 79.0 128 35.9
COL.COLO4_14664 Corchorus olitorius HOM05D005668 ORTHO05D007082 4.6e-13 78.6 101 43.6
Aqoxy5G03828 Aquilegia oxysepala HOM05D005668 ORTHO05D007082 6.0e-13 78.2 104 35.6
MELO3C009208.2 Cucumis melo HOM05D005668 ORTHO05D007082 6.0e-13 78.2 165 34.5
Duzib093G0236 Durio zibethinus HOM05D005668 ORTHO05D007082 7.9e-13 77.8 101 39.6
Atru.chr8.2154 Acer truncatum HOM05D005668 ORTHO05D007082 1.0e-12 77.4 114 39.5
Gohir.A09G162000 Gossypium hirsutum HOM05D005668 ORTHO05D007082 1.0e-12 77.4 95 43.2
Gohir.D09G157600 Gossypium hirsutum HOM05D005668 ORTHO05D007082 1.0e-12 77.4 95 43.2
Gorai.006G179300 Gossypium raimondii HOM05D005668 ORTHO05D007082 1.0e-12 77.4 95 43.2
CiPaw.10G150900 Carya illinoinensis HOM05D005668 ORTHO05D007082 1.8e-12 76.6 104 39.4
CsaV3_3G034370 Cucumis sativus L. HOM05D005668 ORTHO05D007082 3.0e-12 75.9 94 42.6
Cc06_g01940 Coffea canephora HOM05D005668 ORTHO05D007082 3.9e-12 75.5 105 41.0
HanXRQChr10g0292601 Helianthus annuus HOM05D005668 ORTHO05D007082 3.9e-12 75.5 104 38.5
Actinidia29156 Actinidia chinensis HOM05D005668 ORTHO05D007082 5.1e-12 75.1 104 38.5
ECA247G1252 Erigeron canadensis HOM05D005668 ORTHO05D007082 5.1e-12 75.1 104 37.5
Hma1.2p1_0671F.1_g200690 Hydrangea macrophylla HOM05D005668 ORTHO05D007082 5.1e-12 75.1 130 35.4
Lsat_1_v5_gn_9_29260 Lactuca sativa HOM05D005668 ORTHO05D007082 5.1e-12 75.1 104 38.5
SHI12750 Sapria himalayana HOM05D005668 ORTHO05D007082 5.1e-12 75.1 119 37.0
Haze_20910 Corylus avellana HOM05D005668 ORTHO05D007082 6.7e-12 74.7 112 39.3
Eucgr.F01481 Eucalyptus grandis HOM05D005668 ORTHO05D007082 6.7e-12 74.7 94 41.5
HanXRQChr06g0176661 Helianthus annuus HOM05D005668 ORTHO05D007082 1.1e-11 73.9 104 35.6
PGR044G0692 Punica granatum HOM05D005668 ORTHO05D007082 1.1e-11 73.9 100 36.0
CDE04G3656 Ceratophyllum demersum HOM05D005668 ORTHO05D007082 1.5e-11 73.6 105 39.0
Lj3P959T33 Lonicera japonica HOM05D005668 ORTHO05D007082 3.3e-11 72.4 105 41.0
Nn2g13550 Nelumbo nucifera HOM05D005668 ORTHO05D007082 3.3e-11 72.4 122 37.7
Actinidia13809 Actinidia chinensis HOM05D005668 ORTHO05D007082 4.3e-11 72.0 104 36.5
EL10Ac7g17156 Beta vulgaris HOM05D005668 ORTHO05D007082 4.3e-11 72.0 103 37.9
Cpa.g.sc56.75 Carica papaya HOM05D005668 ORTHO05D007082 4.3e-11 72.0 105 38.1
Hund26016 Selenicereus undatus HOM05D005668 ORTHO05D007082 4.3e-11 72.0 102 37.3
ATR0950G003 Amborella trichopoda HOM05D005668 ORTHO05D007082 5.6e-11 71.6 107 39.3
Ciclev10012485m.g Citrus clementina HOM05D005668 ORTHO05D007082 5.6e-11 71.6 102 37.3
BcaC01g04218 Brassica carinata HOM05D005668 ORTHO05D007082 9.6e-11 70.9 88 45.5
CiPaw.09G203400 Carya illinoinensis HOM05D005668 ORTHO05D007082 9.6e-11 70.9 102 41.2
Migut.J00254 Erythranthe guttata HOM05D005668 ORTHO05D007082 9.6e-11 70.9 89 41.6
MBI14_g25115_MAGBIO Magnolia biondii HOM05D005668 ORTHO05D007082 1.6e-10 70.1 123 35.0
Ah.02g128040 Amaranthus hybridus HOM05D004972 ORTHO05D006309 2.1e-10 69.7 103 37.9
Rhsim05G0201000 Rhododendron simsii HOM05D005668 ORTHO05D007082 2.1e-10 69.7 95 41.1
CSS0033766 Camellia sinensis var. sinensis HOM05D005668 ORTHO05D007082 2.8e-10 69.3 128 33.6
AUR62034588 Chenopodium quinoa HOM05D005668 ORTHO05D007082 4.8e-10 68.6 103 35.0
MBI14_g45810_MAGBIO Magnolia biondii HOM05D005668 ORTHO05D007082 4.8e-10 68.6 98 40.8
unitig_27.g24805 Utricularia gibba HOM05D005668 ORTHO05D007082 4.8e-10 68.6 95 37.9
SGA_v2.0_scaffold75G24983 Striga asiatica HOM05D005668 ORTHO05D007082 1.8e-09 66.6 104 36.5
AUR62036679 Chenopodium quinoa HOM05D005668 ORTHO05D007082 2.4e-09 66.2 103 35.0
PGSC0003DMG400019135 Solanum tuberosum HOM05D005668 ORTHO05D007082 2.4e-09 66.2 98 37.8
CAN.G978.9 Capsicum annuum HOM05D005668 ORTHO05D007082 3.1e-09 65.9 95 37.9
Nitab4.5_0000119g0350 Nicotiana tabacum HOM05D005668 ORTHO05D007082 3.1e-09 65.9 98 38.8
Peaxi162Scf00014g01419 Petunia axillaris HOM05D005668 ORTHO05D007082 3.1e-09 65.9 153 31.4
DCAR_024047 Daucus carota HOM05D005668 ORTHO05D007082 4.0e-09 65.5 89 39.3
GSVIVG01034046001 Vitis vinifera HOM05D005668 ORTHO05D007082 5.3e-09 65.1 133 30.8
CAN.G351.19 Capsicum annuum HOM05D005668 ORTHO05D007082 6.9e-09 64.7 98 37.8
Gohir.A10G232501 Gossypium hirsutum HOM05D005668 ORTHO05D007082 6.9e-09 64.7 101 35.6
Sc01g0004980 Simmondsia chinensis HOM05D005668 ORTHO05D007082 6.9e-09 64.7 119 33.6
PGSC0003DMG400020340 Solanum tuberosum HOM05D005668 ORTHO05D007082 6.9e-09 64.7 104 33.7
MSTRG.5615 Avicennia marina HOM05D005668 ORTHO05D007082 9.0e-09 64.3 93 39.8
Gohir.D10G244900 Gossypium hirsutum HOM05D005668 ORTHO05D007082 9.0e-09 64.3 101 35.6
Gorai.011G282300 Gossypium raimondii HOM05D005668 ORTHO05D007082 9.0e-09 64.3 101 35.6
Solyc09g011730.4 Solanum lycopersicum HOM05D005668 ORTHO05D007082 9.0e-09 64.3 104 34.6
Sopen09g006550 Solanum pennellii HOM05D005668 ORTHO05D007082 9.0e-09 64.3 104 34.6
SEGI_35617 Sequoiadendron giganteum HOM05D005668 ORTHO05D007082 2.6e-08 62.8 134 32.8
Gohir.A10G229920 Gossypium hirsutum HOM05D005668 ORTHO05D007082 3.4e-08 62.4 103 35.0
Os02g0788500 Oryza sativa ssp. japonica HOM05D005668 ORTHO05D007082 7.6e-08 61.2 94 37.2
HPP92_006850 Vanilla planifolia HOM05D005668 ORTHO05D007082 7.6e-08 61.2 93 37.6
HPP92_006867 Vanilla planifolia HOM05D005668 ORTHO05D007082 7.6e-08 61.2 93 37.6
Os01g0753200 Oryza sativa ssp. japonica HOM05D005668 ORTHO05D007082 1.3e-07 60.5 88 37.5
Dinv37103 Davidia involucrata HOM05D005668 ORTHO05D007082 2.2e-07 59.7 113 34.5
BraA03t12781Z Brassica rapa HOM05D005668 ORTHO05D007082 4.9e-07 58.5 109 36.7
SMO143G0113 Selaginella moellendorffii HOM05D005668 ORTHO05D007082 1.4e-06 57.0 88 38.6
A03p36100 Brassica napus HOM05D005668 ORTHO05D007082 1.9e-06 56.6 123 34.1
Nitab4.5_0002152g0020 Nicotiana tabacum HOM05D005668 ORTHO05D007082 3.2e-06 55.8 89 36.0


User provided reference genes

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