Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G33886 Trifolium pratense HOM05D001206 ORTHO05D011977 2.5e-33 144.8 71 100.0
TPR.G13547 Trifolium pratense HOM05D001206 ORTHO05D005935 3.9e-18 94.4 55 85.5
Medtr3g048950 Medicago truncatula HOM05D001206 ORTHO05D005935 5.1e-18 94.0 55 85.5
Psat5g186880 Pisum sativum HOM05D001206 ORTHO05D005935 5.1e-18 94.0 55 85.5
TPR.G20838 Trifolium pratense HOM05D001206 ORTHO05D005935 1.1e-17 92.8 60 80.0
Migut.H02113 Erythranthe guttata HOM05D001206 ORTHO05D005935 5.6e-17 90.5 55 81.8
MSTRG.12835 Avicennia marina HOM05D001206 ORTHO05D005935 1.6e-16 89.0 55 81.8
Lalb_Chr15g0080441 Lupinus albus HOM05D001206 ORTHO05D005935 2.1e-16 88.6 55 81.8
Glyma.08G311400 Glycine max HOM05D001206 ORTHO05D005935 2.8e-16 88.2 55 81.8
Phvul.006G036200 Phaseolus vulgaris HOM05D001206 ORTHO05D005935 2.8e-16 88.2 55 81.8
VMungo0540G0597 Vigna mungo HOM05D001206 ORTHO05D005935 2.8e-16 88.2 55 81.8
Actinidia12826 Actinidia chinensis HOM05D001206 ORTHO05D005935 4.7e-16 87.4 55 80.0
Ca_14632_v3 Cicer arietinum L. HOM05D001206 ORTHO05D005935 6.2e-16 87.0 55 80.0
Lj6g0018418 Lotus japonicus HOM05D001206 ORTHO05D005935 6.2e-16 87.0 55 80.0
SGA_v2.0_scaffold4G02113 Striga asiatica HOM05D001206 ORTHO05D005935 6.2e-16 87.0 55 80.0
FAN02G0831 Fragaria x ananassa HOM05D001206 ORTHO05D005935 1.1e-15 86.3 55 78.2
FAN14G2675 Fragaria x ananassa HOM05D001206 ORTHO05D005935 1.1e-15 86.3 55 78.2
Glyma.18G104200 Glycine max HOM05D001206 ORTHO05D005935 1.1e-15 86.3 55 80.0
MD09G1156700 Malus domestica HOM05D001206 ORTHO05D005935 1.1e-15 86.3 55 78.2
RcHm_v2.0_Chr2g0150631 Rosa chinensis HOM05D001206 ORTHO05D005935 1.1e-15 86.3 55 78.2
Atru.chr6.3565 Acer truncatum HOM05D001206 ORTHO05D005935 1.4e-15 85.9 55 76.4
MD17G1143200 Malus domestica HOM05D001206 ORTHO05D005935 1.4e-15 85.9 55 78.2
SalBow7G4591 Salvia bowleyana HOM05D001206 ORTHO05D005935 1.4e-15 85.9 55 80.0
arahy.Tifrunner.gnm1.ann1.BZT8G9 Arachis hypogaea HOM05D001206 ORTHO05D005935 1.8e-15 85.5 55 80.0
Lj1A587G24 Lonicera japonica HOM05D001206 ORTHO05D005935 1.8e-15 85.5 55 74.5
CANSAT64G1074 Cannabis sativa HOM05D001206 ORTHO05D005935 2.3e-15 85.1 55 76.4
Prupe.3G169900 Prunus persica HOM05D001206 ORTHO05D005935 2.3e-15 85.1 55 74.5
Gohir.A06G169500 Gossypium hirsutum HOM05D001206 ORTHO05D005935 3.1e-15 84.7 55 78.2
Gohir.D06G177200 Gossypium hirsutum HOM05D001206 ORTHO05D005935 3.1e-15 84.7 55 78.2
Gorai.010G208200 Gossypium raimondii HOM05D001206 ORTHO05D005935 3.1e-15 84.7 55 78.2
Gorai.N008100 Gossypium raimondii HOM05D001206 ORTHO05D005935 3.1e-15 84.7 55 78.2
arahy.Tifrunner.gnm1.ann1.DXFN4R Arachis hypogaea HOM05D001206 ORTHO05D005935 4.0e-15 84.3 51 84.3
CSS0014076 Camellia sinensis var. sinensis HOM05D001206 ORTHO05D005935 4.0e-15 84.3 55 76.4
CSS0050390 Camellia sinensis var. sinensis HOM05D001206 ORTHO05D005935 4.0e-15 84.3 55 76.4
PGR142G3322 Punica granatum HOM05D001206 ORTHO05D005935 4.0e-15 84.3 55 76.4
Aqoxy3G00674 Aquilegia oxysepala HOM05D001206 ORTHO05D005935 5.2e-15 84.0 55 72.7
EL10Ac9g21024 Beta vulgaris HOM05D001206 ORTHO05D005935 5.2e-15 84.0 55 74.5
AUR62032754 Chenopodium quinoa HOM05D001206 ORTHO05D005935 5.2e-15 84.0 55 74.5
FvH4_6g37630 Fragaria vesca HOM05D001206 ORTHO05D005935 5.2e-15 84.0 49 83.7
Lsat_1_v5_gn_8_31840 Lactuca sativa HOM05D001206 ORTHO05D005935 5.2e-15 84.0 55 72.7
Nn6g34432 Nelumbo nucifera HOM05D001206 ORTHO05D005935 6.8e-15 83.6 55 74.5
Cpa.g.sc139.29 Carica papaya HOM05D001206 ORTHO05D005935 8.9e-15 83.2 55 76.4
HanXRQChr13g0387351 Helianthus annuus HOM05D001206 ORTHO05D005935 8.9e-15 83.2 55 72.7
Rhsim06G0124000 Rhododendron simsii HOM05D001206 ORTHO05D005935 8.9e-15 83.2 55 72.7
vmacro12422 Vaccinium macrocarpon HOM05D001206 ORTHO05D005935 8.9e-15 83.2 55 76.4
vmacro12423 Vaccinium macrocarpon HOM05D001206 ORTHO05D005935 8.9e-15 83.2 55 76.4
Eucgr.K01190 Eucalyptus grandis HOM05D001206 ORTHO05D005935 1.2e-14 82.8 55 74.5
Lsat_1_v5_gn_5_180321 Lactuca sativa HOM05D001206 ORTHO05D005935 1.2e-14 82.8 50 76.0
Potri.018G086350 Populus trichocarpa HOM05D001206 ORTHO05D005935 1.2e-14 82.8 55 74.5
AUR62004905 Chenopodium quinoa HOM05D001206 ORTHO05D005935 1.5e-14 82.4 55 72.7
Thhalv10012940m.g Eutrema salsugineum HOM05D001206 ORTHO05D005935 1.5e-14 82.4 55 76.4
Hund07738 Selenicereus undatus HOM05D001206 ORTHO05D005935 1.5e-14 82.4 55 72.7
PGSC0003DMG402021239 Solanum tuberosum HOM05D001206 ORTHO05D005935 1.5e-14 82.4 56 71.4
DCAR_013291 Daucus carota HOM05D001206 ORTHO05D005935 2.0e-14 82.0 55 72.7
Sp2g14920 Schrenkiella parvula HOM05D001206 ORTHO05D005935 2.0e-14 82.0 55 74.5
BcaB07g30635 Brassica carinata HOM05D001206 ORTHO05D005935 2.6e-14 81.6 55 74.5
CiPaw.03G196100 Carya illinoinensis HOM05D001206 ORTHO05D005935 2.6e-14 81.6 55 74.5
unitig_22.g6850 Utricularia gibba HOM05D001206 ORTHO05D005935 2.6e-14 81.6 55 72.7
CAN.G1191.9 Capsicum annuum HOM05D001206 ORTHO05D005935 3.4e-14 81.3 55 70.9
Ciclev10014821m.g Citrus clementina HOM05D001206 ORTHO05D005935 3.4e-14 81.3 55 72.7
Manes.01G129100 Manihot esculenta HOM05D001206 ORTHO05D005935 3.4e-14 81.3 55 74.5
Peaxi162Scf00035g03126 Petunia axillaris HOM05D001206 ORTHO05D005935 3.4e-14 81.3 55 70.9
Solyc10g007840.3 Solanum lycopersicum HOM05D001206 ORTHO05D005935 3.4e-14 81.3 55 70.9
Sopen10g003740 Solanum pennellii HOM05D001206 ORTHO05D005935 3.4e-14 81.3 55 70.9
TWI38G0487 Tripterygium wilfordii HOM05D001206 ORTHO05D005935 3.4e-14 81.3 55 72.7
TAR629G1684 Trochodendron aralioides HOM05D001206 ORTHO05D005935 3.4e-14 81.3 55 70.9
MBI05_g35447_MAGBIO Magnolia biondii HOM05D001206 ORTHO05D005935 4.4e-14 80.9 55 72.7
Os04g0643200 Oryza sativa ssp. japonica HOM05D001206 ORTHO05D005935 4.4e-14 80.9 55 69.1
Carub.0005s0348 Capsella rubella HOM05D001206 ORTHO05D005935 5.8e-14 80.5 55 72.7
Cc05_g09120 Coffea canephora HOM05D001206 ORTHO05D005935 5.8e-14 80.5 55 69.1
Haze_13462 Corylus avellana HOM05D001206 ORTHO05D005935 5.8e-14 80.5 49 81.6
ECA233G3159 Erigeron canadensis HOM05D001206 ORTHO05D005935 5.8e-14 80.5 55 69.1
AL5G14200 Arabidopsis lyrata HOM05D001206 ORTHO05D005935 7.5e-14 80.1 55 72.7
AT3G25660 Arabidopsis thaliana HOM05D001206 ORTHO05D005935 7.5e-14 80.1 55 72.7
Aa31LG2G6650 Aethionema arabicum HOM05D001206 ORTHO05D005935 9.9e-14 79.7 55 72.7
BcaC04g21423 Brassica carinata HOM05D001206 ORTHO05D005935 9.9e-14 79.7 55 72.7
A09p24920 Brassica napus HOM05D001206 ORTHO05D005935 9.9e-14 79.7 55 72.7
C09p31950 Brassica napus HOM05D001206 ORTHO05D005935 9.9e-14 79.7 55 72.7
BolC9t56049H Brassica oleracea HOM05D001206 ORTHO05D005935 9.9e-14 79.7 55 72.7
BraA09t38080Z Brassica rapa HOM05D001206 ORTHO05D005935 9.9e-14 79.7 55 72.7
Nitab4.5_0001402g0160 Nicotiana tabacum HOM05D001206 ORTHO05D005935 9.9e-14 79.7 55 69.1
THA.LOC104824040 Tarenaya hassleriana HOM05D001206 ORTHO05D005935 9.9e-14 79.7 55 70.9
CsaV3_6G037950 Cucumis sativus L. HOM05D004204 ORTHO05D005935 1.3e-13 79.3 55 70.9
Thecc.10G113900 Theobroma cacao HOM05D001206 ORTHO05D005935 1.3e-13 79.3 55 72.7
Oeu032122.1 Olea europaea HOM05D001206 ORTHO05D005935 1.7e-13 79.0 55 72.7
PSO017G2524 Papaver somniferum HOM05D001206 ORTHO05D005935 1.7e-13 79.0 55 69.1
PSO478G1473 Papaver somniferum HOM05D001206 ORTHO05D005935 1.7e-13 79.0 55 69.1
Sabra18G0074600 Salix brachista HOM05D003301 ORTHO05D003665 1.7e-13 79.0 49 77.6
Nitab4.5_0001402g0110 Nicotiana tabacum HOM05D001206 ORTHO05D005935 2.2e-13 78.6 55 67.3
QL08p043357 Quercus lobata HOM05D001206 ORTHO05D005935 2.9e-13 78.2 55 72.7
CARHR288520 Cardamine hirsuta HOM05D001206 ORTHO05D005935 3.7e-13 77.8 55 69.1
ATR1096G083 Amborella trichopoda HOM05D001206 ORTHO05D005935 4.9e-13 77.4 55 67.3
CARHR260190 Cardamine hirsuta HOM05D001206 ORTHO05D005935 4.9e-13 77.4 55 69.1
ClCG09G022260 Citrullus lanatus HOM05D001206 ORTHO05D005935 4.9e-13 77.4 55 70.9
MELO3C014457.2 Cucumis melo HOM05D001206 ORTHO05D005935 4.9e-13 77.4 55 70.9
Dinv06275 Davidia involucrata HOM05D001206 ORTHO05D005935 4.9e-13 77.4 49 73.5
Nitab4.5_0002027g0090 Nicotiana tabacum HOM05D001206 ORTHO05D005935 4.9e-13 77.4 55 65.5
GSVIVG01020788001 Vitis vinifera HOM05D001206 ORTHO05D005935 4.9e-13 77.4 55 69.1
Sed0006625 Sechium edule HOM05D001206 ORTHO05D005935 6.4e-13 77.0 49 77.6
CDE05G3011 Ceratophyllum demersum HOM05D001206 ORTHO05D005935 1.4e-12 75.9 55 65.5
Hma1.2p1_3358F.1_g335550 Hydrangea macrophylla HOM05D001206 ORTHO05D005935 1.4e-12 75.9 64 64.1
Ah.01g016080 Amaranthus hybridus HOM05D001206 ORTHO05D005935 2.4e-12 75.1 65 61.5
Gorai.N005800 Gossypium raimondii HOM05D001206 ORTHO05D005935 5.4e-12 73.9 62 66.1
HPP92_002350 Vanilla planifolia HOM05D001206 ORTHO05D005935 7.1e-12 73.6 55 65.5
Pp3c16_16670 Physcomitrium patens HOM05D001206 ORTHO05D005935 1.6e-11 72.4 55 61.8
SEGI_06909 Sequoiadendron giganteum HOM05D001206 ORTHO05D005935 1.6e-11 72.4 55 61.8
Pp3c27_1950 Physcomitrium patens HOM05D001206 ORTHO05D005935 2.1e-11 72.0 55 60.0
THA.LOC104805240 Tarenaya hassleriana HOM05D001206 ORTHO05D005935 2.1e-11 72.0 55 63.6
AagrBONN_evm.TU.Sc2ySwM_368.1898 Anthoceros agrestis HOM05D001206 ORTHO05D005935 7.8e-11 70.1 55 60.0
Mapoly0029s0077 Marchantia polymorpha HOM05D001206 ORTHO05D005935 1.5e-09 65.9 55 56.4
Cre10.g439400 Chlamydomonas reinhardtii HOM05D001206 ORTHO05D005935 1.6e-08 62.4 55 52.7
TPR.G22111 Trifolium pratense HOM05D000746 ORTHO05D011977 3.6e-08 61.2 32 93.8
SMO118G0181 Selaginella moellendorffii HOM05D001206 ORTHO05D005935 4.7e-08 60.8 55 52.7
MBI19_g33778_MAGBIO Magnolia biondii HOM05D001433 ORTHO05D011977 6.2e-08 60.5 54 59.3
CBR_g12438 Chara braunii HOM05D001206 ORTHO05D005935 9.9e-06 53.1 55 41.8


User provided reference genes

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