Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G33869 Trifolium pratense HOM05D005001 ORTHO05D005796 0.0e+00 1668.7 854 100.0
Medtr5g024240 Medicago truncatula HOM05D005001 ORTHO05D005796 0.0e+00 1424.5 857 85.8
Psat2g148080 Pisum sativum HOM05D005001 ORTHO05D005796 0.0e+00 1379.8 860 82.8
Ca_24983_v3 Cicer arietinum L. HOM05D005001 ORTHO05D005796 0.0e+00 1329.7 865 82.5
Lj2g0010904 Lotus japonicus HOM05D005001 ORTHO05D005796 0.0e+00 1196.8 895 72.0
Glyma.11G086000 Glycine max HOM05D005001 ORTHO05D005796 0.0e+00 1174.8 897 71.6
Glyma.01G158600 Glycine max HOM05D005001 ORTHO05D005796 0.0e+00 1172.9 899 71.0
Phvul.002G116700 Phaseolus vulgaris HOM05D005001 ORTHO05D005796 0.0e+00 1147.9 900 69.4
VMungo1215G1172 Vigna mungo HOM05D005001 ORTHO05D005796 0.0e+00 1120.5 883 69.3
arahy.Tifrunner.gnm1.ann1.1YR532 Arachis hypogaea HOM05D005001 ORTHO05D005796 3.7e-309 1064.7 903 65.3
arahy.Tifrunner.gnm1.ann1.XJ0R0A Arachis hypogaea HOM05D005001 ORTHO05D005796 3.7e-309 1064.7 903 65.3
Lalb_Chr05g0214801 Lupinus albus HOM05D005001 ORTHO05D005796 1.9e-284 982.6 886 63.3
Glyma.16G116100 Glycine max HOM05D005001 ORTHO05D005796 4.6e-267 924.9 887 60.2
QL06p052982 Quercus lobata HOM05D005001 ORTHO05D005796 1.9e-257 892.9 903 57.3
Glyma.09G198000 Glycine max HOM05D005001 ORTHO05D005796 1.2e-254 883.6 858 59.6
Cfa007079 Carpinus fangiana HOM05D005001 ORTHO05D005796 4.3e-249 865.1 900 56.4
Atru.chr3.132 Acer truncatum HOM05D005001 ORTHO05D005796 5.3e-247 858.2 895 56.0
Duzib147G1512 Durio zibethinus HOM05D005001 ORTHO05D005796 8.8e-242 840.9 895 53.4
Ciclev10024851m.g Citrus clementina HOM05D005001 ORTHO05D005796 4.4e-241 838.6 902 54.1
Dinv08162 Davidia involucrata HOM05D005001 ORTHO05D005796 1.7e-240 836.6 910 54.4
CiPaw.07G002600 Carya illinoinensis HOM05D005001 ORTHO05D005796 3.5e-238 828.9 898 54.0
Haze_03653 Corylus avellana HOM05D005001 ORTHO05D005796 2.9e-237 825.9 886 54.7
VMungo0251G3365 Vigna mungo HOM05D005001 ORTHO05D005796 6.5e-237 824.7 876 56.4
Prupe.7G183200 Prunus persica HOM05D005001 ORTHO05D005796 8.5e-237 824.3 900 54.7
Gorai.003G002300 Gossypium raimondii HOM05D005001 ORTHO05D005796 4.2e-236 822.0 894 53.2
Dinv40189 Davidia involucrata HOM05D005001 ORTHO05D005796 1.2e-235 820.5 902 53.3
Gohir.D03G002000 Gossypium hirsutum HOM05D005001 ORTHO05D005796 3.0e-234 815.8 894 52.9
Phvul.003G270200 Phaseolus vulgaris HOM05D005001 ORTHO05D005796 3.0e-234 815.8 889 55.2
Gohir.A02G177800 Gossypium hirsutum HOM05D005001 ORTHO05D005796 1.5e-233 813.5 894 52.8
Potri.005G101700 Populus trichocarpa HOM05D005001 ORTHO05D005796 2.8e-232 809.3 902 52.7
Manes.01G155500 Manihot esculenta HOM05D005001 ORTHO05D005796 4.8e-232 808.5 905 52.8
COL.COLO4_22551 Corchorus olitorius HOM05D005001 ORTHO05D005796 1.8e-231 806.6 882 53.1
Sabra05G0084100 Salix brachista HOM05D005001 ORTHO05D005796 2.7e-230 802.7 903 52.7
RcHm_v2.0_Chr2g0097131 Rosa chinensis HOM05D005001 ORTHO05D005796 3.6e-227 792.3 902 52.9
Manes.02G114100 Manihot esculenta HOM05D005001 ORTHO05D005796 1.4e-226 790.4 899 52.1
Actinidia17358 Actinidia chinensis HOM05D005001 ORTHO05D005796 5.7e-225 785.0 903 51.7
Thecc.01G005400 Theobroma cacao HOM05D005001 ORTHO05D005796 3.7e-224 782.3 838 53.5
FAN26G0131 Fragaria x ananassa HOM05D005001 ORTHO05D005796 8.3e-224 781.2 902 52.3
Lalb_Chr16g0380031 Lupinus albus HOM05D005001 ORTHO05D005796 4.1e-223 778.9 675 64.7
Actinidia22897 Actinidia chinensis HOM05D005001 ORTHO05D005796 9.1e-223 777.7 902 50.7
Cpa.g.sc6.369 Carica papaya HOM05D005001 ORTHO05D005796 2.7e-222 776.2 909 50.3
FvH4_1g10290 Fragaria vesca HOM05D005001 ORTHO05D005796 1.7e-221 773.5 902 52.0
CSS0006057 Camellia sinensis var. sinensis HOM05D005001 ORTHO05D005796 2.2e-221 773.1 898 51.4
FAN19G0848 Fragaria x ananassa HOM05D005001 ORTHO05D005796 2.5e-220 769.6 902 51.8
MD15G1231000 Malus domestica HOM05D005001 ORTHO05D005796 1.5e-217 760.4 899 51.5
ClCG10G000290 Citrullus lanatus HOM05D005001 ORTHO05D005796 4.1e-215 752.3 906 49.9
CsaV3_3G000320 Cucumis sativus L. HOM05D005001 ORTHO05D005796 2.0e-214 750.0 908 49.2
Lj2C499T6 Lonicera japonica HOM05D005001 ORTHO05D005796 7.5e-209 731.5 868 50.6
CANSAT25G0747 Cannabis sativa HOM05D005001 ORTHO05D005796 9.8e-209 731.1 899 50.9
GSVIVG01026639001 Vitis vinifera HOM05D005001 ORTHO05D005796 1.3e-208 730.7 860 51.7
TWI09G0186 Tripterygium wilfordii HOM05D005001 ORTHO05D005796 1.1e-207 727.6 900 50.1
TAR628G1461 Trochodendron aralioides HOM05D005001 ORTHO05D005796 1.4e-207 727.2 907 48.3
MD02G1115000 Malus domestica HOM05D005001 ORTHO05D005796 4.1e-207 725.7 902 49.0
CSS0002200 Camellia sinensis var. sinensis HOM05D005001 ORTHO05D005796 7.8e-206 721.5 899 48.2
Gorai.001G199100 Gossypium raimondii HOM05D005001 ORTHO05D005796 1.3e-205 720.7 976 46.5
Lj4g0000674 Lotus japonicus HOM05D005001 ORTHO05D005796 6.6e-205 718.4 872 51.9
CiPaw.08G181700 Carya illinoinensis HOM05D005001 ORTHO05D005796 3.6e-203 712.6 830 52.4
Sed0016412 Sechium edule HOM05D005001 ORTHO05D005796 4.7e-203 712.2 896 47.7
TWI53G0117 Tripterygium wilfordii HOM05D005001 ORTHO05D005796 5.2e-202 708.8 839 51.0
FAN23G2126 Fragaria x ananassa HOM05D005001 ORTHO05D005796 4.9e-200 702.2 899 49.5
MELO3C013726.2 Cucumis melo HOM05D005001 ORTHO05D005796 1.5e-196 690.6 856 48.7
Cc07_g11880 Coffea canephora HOM05D005001 ORTHO05D005796 6.2e-195 685.3 898 45.7
Rhsim10G0195500 Rhododendron simsii HOM05D005001 ORTHO05D005796 4.4e-193 679.1 896 47.1
Nitab4.5_0001467g0010 Nicotiana tabacum HOM05D005001 ORTHO05D005796 5.1e-189 665.6 906 44.6
Nitab4.5_0004608g0060 Nicotiana tabacum HOM05D005001 ORTHO05D005796 6.4e-184 648.7 905 44.2
Solyc02g082680.4 Solanum lycopersicum HOM05D005001 ORTHO05D005796 8.4e-184 648.3 902 44.0
Peaxi162Scf01475g00020 Petunia axillaris HOM05D005001 ORTHO05D005796 1.1e-183 647.9 902 44.1
Sopen02g027420 Solanum pennellii HOM05D005001 ORTHO05D005796 7.1e-183 645.2 902 43.9
vmacro20631 Vaccinium macrocarpon HOM05D005001 ORTHO05D005796 7.8e-182 641.7 867 46.0
Oeu042477.2 Olea europaea HOM05D005001 ORTHO05D005796 2.5e-180 636.7 828 47.1
CSS0020393 Camellia sinensis var. sinensis HOM05D005001 ORTHO05D005796 8.9e-178 628.2 863 45.8
Aqoxy5G01010 Aquilegia oxysepala HOM05D005001 ORTHO05D005796 1.4e-175 620.9 901 43.1
Nn6g31704 Nelumbo nucifera HOM05D005001 ORTHO05D005796 1.4e-175 620.9 877 44.6
PGSC0003DMG400001566 Solanum tuberosum HOM05D005001 ORTHO05D005796 1.9e-175 620.5 887 43.0
DCAR_002956 Daucus carota HOM05D005001 ORTHO05D005796 5.6e-172 609.0 870 45.1
Nn5g30991 Nelumbo nucifera HOM05D005001 ORTHO05D005796 7.3e-172 608.6 892 44.6
MSTRG.3631 Avicennia marina HOM05D005001 ORTHO05D005796 1.9e-167 594.0 900 42.6
Lsat_1_v5_gn_3_67981 Lactuca sativa HOM05D005001 ORTHO05D005796 1.0e-165 588.2 883 44.4
Migut.L00777 Erythranthe guttata HOM05D005001 ORTHO05D005796 5.1e-165 585.9 886 43.7
SalBow3G4537 Salvia bowleyana HOM05D005001 ORTHO05D005796 1.2e-158 564.7 871 42.0
AUR62002047 Chenopodium quinoa HOM05D005001 ORTHO05D005796 6.0e-158 562.4 965 39.5
SalBow3G0770 Salvia bowleyana HOM05D005001 ORTHO05D005796 6.0e-158 562.4 871 41.7
Eucgr.J02537 Eucalyptus grandis HOM05D005001 ORTHO05D005796 1.0e-157 561.6 644 52.0
AUR62003748 Chenopodium quinoa HOM05D005001 ORTHO05D005796 3.9e-157 559.7 963 39.5
ECA246G0522 Erigeron canadensis HOM05D005001 ORTHO05D005796 6.7e-157 558.9 762 47.5
arahy.Tifrunner.gnm1.ann1.3933SP Arachis hypogaea HOM05D005001 ORTHO05D005796 1.3e-155 554.7 854 45.3
Nitab4.5_0005297g0010 Nicotiana tabacum HOM05D005001 ORTHO05D005796 2.1e-155 553.9 805 43.4
PSO761G0634 Papaver somniferum HOM05D005001 ORTHO05D005796 3.7e-155 553.1 942 39.7
Peaxi162Scf00122g02417 Petunia axillaris HOM05D005001 ORTHO05D005796 4.8e-155 552.7 820 43.3
EL10Ac6g15057 Beta vulgaris HOM05D005001 ORTHO05D005796 6.2e-155 552.4 892 40.7
Hund03602 Selenicereus undatus HOM05D005001 ORTHO05D005796 8.2e-155 552.0 975 39.2
HanXRQChr16g0531881 Helianthus annuus HOM05D005001 ORTHO05D005796 3.1e-154 550.1 862 41.8
PSO210G6136 Papaver somniferum HOM05D005001 ORTHO05D005796 1.5e-153 547.7 943 39.6
Nitab4.5_0000495g0110 Nicotiana tabacum HOM05D005001 ORTHO05D005796 6.5e-152 542.3 798 43.7
MBI08_g12258_MAGBIO Magnolia biondii HOM05D005001 ORTHO05D005796 8.4e-152 542.0 965 39.1
THA.LOC104804295 Tarenaya hassleriana HOM05D005001 ORTHO05D005796 1.8e-149 534.3 870 42.2
Ah.02g122920 Amaranthus hybridus HOM05D005001 ORTHO05D005796 8.7e-149 531.9 911 40.4
SalBow5G1781 Salvia bowleyana HOM05D005001 ORTHO05D005796 2.1e-147 527.3 850 39.8
PGR119G1974 Punica granatum HOM05D005001 ORTHO05D005796 4.1e-146 523.1 829 42.9
PGSC0003DMG400018683 Solanum tuberosum HOM05D005001 ORTHO05D005796 1.8e-138 497.7 850 40.4
Thhalv10022564m.g Eutrema salsugineum HOM05D005001 ORTHO05D005796 9.1e-138 495.4 883 41.2
Sopen03g005960 Solanum pennellii HOM05D005001 ORTHO05D005796 1.5e-137 494.6 850 40.1
Sp3g30910 Schrenkiella parvula HOM05D005001 ORTHO05D005796 7.7e-137 492.3 883 41.6
BcaC06g36289 Brassica carinata HOM05D005001 ORTHO05D005796 1.1e-135 488.4 876 41.1
C07p05710 Brassica napus HOM05D005001 ORTHO05D005796 4.2e-135 486.5 873 40.8
BolC7t40970H Brassica oleracea HOM05D005001 ORTHO05D005796 4.2e-135 486.5 873 40.8
AL3G50520 Arabidopsis lyrata HOM05D005001 ORTHO05D005796 9.4e-135 485.3 889 41.2
Carub.0003s3164 Capsella rubella HOM05D005001 ORTHO05D005796 3.6e-134 483.4 884 41.7
A07p03420 Brassica napus HOM05D005001 ORTHO05D005796 6.1e-134 482.6 876 41.4
BraA07t28140Z Brassica rapa HOM05D005001 ORTHO05D005796 6.1e-134 482.6 876 41.4
Solyc03g032110.3 Solanum lycopersicum HOM05D005001 ORTHO05D005796 3.0e-133 480.3 850 39.6
AT2G17550 Arabidopsis thaliana HOM05D005001 ORTHO05D005796 7.4e-132 475.7 890 40.6
CARHR107730 Cardamine hirsuta HOM05D005001 ORTHO05D005796 4.1e-130 469.9 888 41.4
BcaB03g16525 Brassica carinata HOM05D005001 ORTHO05D005796 5.3e-130 469.5 880 40.1
Hund19695 Selenicereus undatus HOM05D005001 ORTHO05D005796 7.7e-129 465.7 906 38.4
SGA_v2.0_scaffold41G15753 Striga asiatica HOM05D005001 ORTHO05D005796 6.1e-126 456.1 876 38.4
Gohir.D07G178000 Gossypium hirsutum HOM05D005001 ORTHO05D005796 6.7e-117 426.0 708 43.1
Gohir.A07G171200 Gossypium hirsutum HOM05D005001 ORTHO05D005796 5.7e-116 422.9 668 44.5
Aa31LG8G14850 Aethionema arabicum HOM05D005001 ORTHO05D005796 1.4e-114 418.3 878 37.1
ATR0807G148 Amborella trichopoda HOM05D005001 ORTHO05D005796 2.2e-107 394.4 857 36.1
MBI05_g14348_MAGBIO Magnolia biondii HOM05D005001 ORTHO05D005796 8.9e-101 372.5 864 34.7
Sc03g0003960 Simmondsia chinensis HOM05D005001 ORTHO05D005796 7.8e-97 359.4 623 40.3
PSO675G2514 Papaver somniferum HOM05D005001 ORTHO05D005796 1.0e-96 359.0 907 34.6
PSO541G4728 Papaver somniferum HOM05D005001 ORTHO05D005796 1.4e-93 348.6 924 33.9
THA.LOC104819718 Tarenaya hassleriana HOM05D005001 ORTHO05D005796 3.0e-93 347.4 868 34.7
Os03g0130700 Oryza sativa ssp. japonica HOM05D005001 ORTHO05D005796 4.7e-86 323.6 923 31.7
Medtr5g025350 Medicago truncatula HOM05D005001 ORTHO05D005796 1.9e-82 311.6 241 71.8
Zm00001eb002440 Zea mays HOM05D005001 ORTHO05D005796 9.5e-79 299.3 931 31.1
HPP92_007108 Vanilla planifolia HOM05D005001 ORTHO05D005796 5.2e-77 293.5 909 29.5
Lalb_Chr16g0380041 Lupinus albus HOM05D005001 ORTHO05D005796 1.0e-72 279.3 214 69.6
Lj4A237T62 Lonicera japonica HOM05D005001 ORTHO05D005796 1.4e-66 258.8 507 38.1
arahy.Tifrunner.gnm1.ann1.8C07DS Arachis hypogaea HOM05D005001 ORTHO05D005796 3.3e-63 247.7 578 37.4
unitig_37.g12434 Utricularia gibba HOM05D005001 ORTHO05D005796 1.6e-62 245.4 406 39.2
Medtr5g025380 Medicago truncatula HOM05D005001 ORTHO05D005796 5.5e-42 177.2 137 72.3
FAN28G2205 Fragaria x ananassa HOM05D005001 ORTHO05D005796 7.9e-41 173.3 179 53.1
Thhalv10023126m.g Eutrema salsugineum HOM05D005001 ORTHO05D005796 7.1e-34 150.2 227 44.5
Os06g0728200 Oryza sativa ssp. japonica HOM05D005001 ORTHO05D005796 9.3e-34 149.8 929 25.8
HPP92_022687 Vanilla planifolia HOM05D005001 ORTHO05D005796 2.7e-33 148.3 391 35.5
Lj4P237T25 Lonicera japonica HOM05D005001 ORTHO05D005796 1.1e-29 136.3 205 43.9
unitig_37.g12435 Utricularia gibba HOM05D005001 ORTHO05D005796 2.4e-29 135.2 326 34.0
CDE05G1993 Ceratophyllum demersum HOM05D005001 ORTHO05D005796 1.4e-24 119.4 590 26.9
CDE05G3420 Ceratophyllum demersum HOM05D005001 ORTHO05D005796 3.0e-24 118.2 539 26.9
HPP92_022688 Vanilla planifolia HOM05D005001 ORTHO05D005796 3.4e-20 104.8 386 30.6
Dinv23669 Davidia involucrata HOM05D005001 ORTHO05D005796 4.4e-15 87.8 152 40.8
Dinv30187 Davidia involucrata HOM05D005001 ORTHO05D005796 4.8e-14 84.3 144 39.6
SEGI_29651 Sequoiadendron giganteum HOM05D002769 ORTHO05D003160 1.9e-10 72.4 689 22.8
Dinv03480 Davidia involucrata HOM05D005001 ORTHO05D005796 2.5e-10 72.0 92 45.7
SEGI_23141 Sequoiadendron giganteum HOM05D002769 ORTHO05D001913 2.5e-10 72.0 444 24.1
SEGI_39803 Sequoiadendron giganteum HOM05D002769 ORTHO05D003160 4.2e-10 71.2 308 26.6
HPP92_019094 Vanilla planifolia HOM05D002036 ORTHO05D001913 4.4e-07 61.2 250 26.4
HPP92_019812 Vanilla planifolia HOM05D002036 ORTHO05D001913 9.7e-07 60.1 249 26.1


User provided reference genes

Program Settings