Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G33802 Trifolium pratense HOM05D005555 ORTHO05D006923 2.4e-243 845.1 441 100.0
Psat5g178680 Pisum sativum HOM05D005555 ORTHO05D006923 3.2e-219 765.0 436 91.5
Lj6g0008930 Lotus japonicus HOM05D005555 ORTHO05D006923 5.2e-214 747.7 441 88.9
Medtr3g052180 Medicago truncatula HOM05D005555 ORTHO05D006923 1.9e-211 739.2 434 88.5
Medtr5g049170 Medicago truncatula HOM05D005555 ORTHO05D006923 4.3e-208 728.0 434 87.1
arahy.Tifrunner.gnm1.ann1.UR7PB1 Arachis hypogaea HOM05D005555 ORTHO05D006923 3.6e-207 724.9 441 85.7
arahy.Tifrunner.gnm1.ann1.P3VUIG Arachis hypogaea HOM05D005555 ORTHO05D006923 4.0e-206 721.5 441 85.5
Lalb_Chr20g0113831 Lupinus albus HOM05D005555 ORTHO05D006923 4.4e-205 718.0 441 84.6
VMungo0540G1244 Vigna mungo HOM05D005555 ORTHO05D006923 7.6e-205 717.2 441 85.5
arahy.Tifrunner.gnm1.ann1.QY89IE Arachis hypogaea HOM05D005555 ORTHO05D006923 1.3e-204 716.5 441 84.8
Glyma.08G316800 Glycine max HOM05D005555 ORTHO05D006923 5.4e-203 711.1 441 84.6
Glyma.18G096300 Glycine max HOM05D005555 ORTHO05D006923 1.6e-202 709.5 441 84.4
Phvul.006G044000 Phaseolus vulgaris HOM05D005555 ORTHO05D006923 7.8e-202 707.2 441 84.4
Ca_14731_v3 Cicer arietinum L. HOM05D005555 ORTHO05D006923 4.4e-197 691.4 522 73.6
QL08p010014 Quercus lobata HOM05D005555 ORTHO05D006923 1.3e-185 653.3 441 78.2
arahy.Tifrunner.gnm1.ann1.GVQ212 Arachis hypogaea HOM05D005555 ORTHO05D006923 3.0e-185 652.1 476 74.8
GSVIVG01037655001 Vitis vinifera HOM05D005555 ORTHO05D006923 6.9e-182 641.0 448 75.9
Gorai.009G438400 Gossypium raimondii HOM05D005555 ORTHO05D006923 3.4e-181 638.6 441 77.1
Sed0005603 Sechium edule HOM05D005555 ORTHO05D006923 2.2e-180 636.0 445 76.0
Eucgr.F03470 Eucalyptus grandis HOM05D005555 ORTHO05D006923 1.4e-179 633.3 444 76.8
Duzib268G1179 Durio zibethinus HOM05D005555 ORTHO05D006923 3.2e-179 632.1 441 76.9
CSS0046165 Camellia sinensis var. sinensis HOM05D005555 ORTHO05D006923 4.6e-178 628.2 446 74.7
CsaV3_7G021840 Cucumis sativus L. HOM05D005555 ORTHO05D006923 7.9e-178 627.5 443 76.3
TWI39G0347 Tripterygium wilfordii HOM05D005555 ORTHO05D006923 1.0e-177 627.1 447 75.4
CiPaw.12G130100 Carya illinoinensis HOM05D005555 ORTHO05D006923 1.9e-176 622.9 445 74.8
RcHm_v2.0_Chr2g0139231 Rosa chinensis HOM05D005555 ORTHO05D006923 3.3e-176 622.1 444 74.5
Ciclev10008353m.g Citrus clementina HOM05D005555 ORTHO05D006923 5.6e-176 621.3 444 75.7
Dinv22259 Davidia involucrata HOM05D005555 ORTHO05D006923 5.6e-176 621.3 445 74.2
Gohir.A04G016500 Gossypium hirsutum HOM05D005555 ORTHO05D006923 5.6e-176 621.3 441 75.7
CANSAT11G1088 Cannabis sativa HOM05D005555 ORTHO05D006923 8.2e-175 617.5 437 75.3
Thecc.07G035900 Theobroma cacao HOM05D005555 ORTHO05D006923 5.3e-174 614.8 441 75.7
Lj8C169T24 Lonicera japonica HOM05D005555 ORTHO05D006923 1.2e-173 613.6 468 69.9
Gohir.D05G369700 Gossypium hirsutum HOM05D005555 ORTHO05D006923 2.0e-173 612.8 441 75.1
CiPaw.11G190000 Carya illinoinensis HOM05D005555 ORTHO05D006923 7.6e-173 610.9 443 73.6
Nn1g07133 Nelumbo nucifera HOM05D005555 ORTHO05D006923 1.0e-172 610.5 445 72.1
Cpa.g.sc12.303 Carica papaya HOM05D005555 ORTHO05D006923 4.9e-172 608.2 443 74.5
THA.LOC104817858 Tarenaya hassleriana HOM05D005555 ORTHO05D006923 1.9e-171 606.3 440 75.0
Prupe.3G065100 Prunus persica HOM05D005555 ORTHO05D006923 3.2e-171 605.5 435 74.7
Migut.M01757 Erythranthe guttata HOM05D005555 ORTHO05D006923 9.3e-171 604.0 443 72.0
SGA_v2.0_scaffold172G39000 Striga asiatica HOM05D005555 ORTHO05D006923 1.2e-170 603.6 448 71.9
Manes.15G071400 Manihot esculenta HOM05D005555 ORTHO05D006923 1.6e-170 603.2 440 74.8
TAR627G0887 Trochodendron aralioides HOM05D005555 ORTHO05D006923 1.6e-170 603.2 439 73.3
FAN14G2902 Fragaria x ananassa HOM05D005555 ORTHO05D006923 2.7e-170 602.4 445 72.1
Hund15555 Selenicereus undatus HOM05D005555 ORTHO05D006923 3.5e-170 602.1 438 69.9
MSTRG.6923 Avicennia marina HOM05D005555 ORTHO05D006923 7.9e-170 600.9 445 72.4
FAN05G3309 Fragaria x ananassa HOM05D005555 ORTHO05D006923 1.8e-169 599.7 445 71.9
MD17G1190200 Malus domestica HOM05D005555 ORTHO05D006923 4.3e-168 595.1 446 72.4
ClCG09G010820 Citrullus lanatus HOM05D005555 ORTHO05D006923 9.7e-168 594.0 488 68.6
CSS0038584 Camellia sinensis var. sinensis HOM05D005555 ORTHO05D006923 3.7e-167 592.0 440 72.5
EL10Ac2g03146 Beta vulgaris HOM05D005555 ORTHO05D006923 6.3e-167 591.3 459 68.4
Actinidia35345 Actinidia chinensis HOM05D005555 ORTHO05D006923 1.1e-166 590.5 446 71.1
ECA240G0357 Erigeron canadensis HOM05D005555 ORTHO05D006923 5.3e-166 588.2 430 73.0
PSO541G4760 Papaver somniferum HOM05D005555 ORTHO05D006923 1.5e-165 586.6 431 73.5
BcaC08g43248 Brassica carinata HOM05D005555 ORTHO05D006923 2.6e-165 585.9 434 73.5
A06p02920 Brassica napus HOM05D005555 ORTHO05D006923 2.6e-165 585.9 434 73.5
C06p05960 Brassica napus HOM05D005555 ORTHO05D006923 2.6e-165 585.9 434 73.5
BolC6t35709H Brassica oleracea HOM05D005555 ORTHO05D006923 2.6e-165 585.9 434 73.5
BraA06t23497Z Brassica rapa HOM05D005555 ORTHO05D006923 2.6e-165 585.9 434 73.5
Aqoxy1G02148 Aquilegia oxysepala HOM05D005555 ORTHO05D006923 4.5e-165 585.1 431 71.2
AL1G58400 Arabidopsis lyrata HOM05D005555 ORTHO05D006923 1.3e-164 583.6 434 73.0
Gorai.009G438500 Gossypium raimondii HOM05D005555 ORTHO05D006923 1.3e-164 583.6 441 72.3
Sp1g37550 Schrenkiella parvula HOM05D005555 ORTHO05D006923 1.7e-164 583.2 435 73.1
Solyc12g005050.2 Solanum lycopersicum HOM05D005555 ORTHO05D006923 2.2e-164 582.8 442 71.3
Carub.0001s3974 Capsella rubella HOM05D005555 ORTHO05D006923 2.9e-164 582.4 434 73.0
AT1G50710 Arabidopsis thaliana HOM05D005555 ORTHO05D006923 3.8e-164 582.0 434 72.8
Sopen12g001050 Solanum pennellii HOM05D005555 ORTHO05D006923 6.5e-164 581.3 442 71.3
BcaC08g43250 Brassica carinata HOM05D005555 ORTHO05D006923 1.1e-163 580.5 434 73.3
Rhsim06G0217300 Rhododendron simsii HOM05D005555 ORTHO05D006923 1.4e-163 580.1 463 68.0
TPR.G5778 Trifolium pratense HOM05D005555 ORTHO05D006923 3.2e-163 578.9 349 87.7
Nitab4.5_0008473g0010 Nicotiana tabacum HOM05D005555 ORTHO05D006923 5.5e-163 578.2 437 71.4
MELO3C013162.2 Cucumis melo HOM05D005555 ORTHO05D006923 2.1e-162 576.2 454 70.7
Aa31LG10G3630 Aethionema arabicum HOM05D005555 ORTHO05D006923 3.6e-162 575.5 439 71.1
Atru.chr2.3417 Acer truncatum HOM05D005555 ORTHO05D006923 4.6e-162 575.1 445 70.3
FAN02G4472 Fragaria x ananassa HOM05D005555 ORTHO05D006923 4.6e-162 575.1 445 68.8
Nn1g03520 Nelumbo nucifera HOM05D005555 ORTHO05D006923 1.0e-161 573.9 441 69.2
Thhalv10011513m.g Eutrema salsugineum HOM05D005555 ORTHO05D006923 1.8e-161 573.2 434 72.4
CARHR040810 Cardamine hirsuta HOM05D005555 ORTHO05D006923 2.3e-161 572.8 434 72.1
Cc07_g19690 Coffea canephora HOM05D005555 ORTHO05D006923 2.3e-161 572.8 439 70.4
Ah.10g032310 Amaranthus hybridus HOM05D005555 ORTHO05D006923 3.0e-161 572.4 441 69.6
DCAR_016709 Daucus carota HOM05D005555 ORTHO05D006923 4.3e-160 568.5 438 70.8
Lsat_1_v5_gn_2_47780 Lactuca sativa HOM05D005555 ORTHO05D006923 4.3e-160 568.5 439 71.1
Cc05_g13620 Coffea canephora HOM05D005555 ORTHO05D006923 1.3e-159 567.0 439 69.2
MD09G1208700 Malus domestica HOM05D005555 ORTHO05D006923 2.8e-159 565.8 428 71.3
PSO675G4173 Papaver somniferum HOM05D005555 ORTHO05D006923 2.8e-159 565.8 431 71.2
PGR031G0129 Punica granatum HOM05D005555 ORTHO05D006923 2.8e-159 565.8 449 69.0
PGSC0003DMG400027869 Solanum tuberosum HOM05D005555 ORTHO05D006923 3.7e-159 565.5 447 69.1
Potri.011G090800 Populus trichocarpa HOM05D005555 ORTHO05D006923 1.4e-158 563.5 442 71.3
HanXRQChr03g0076481 Helianthus annuus HOM05D005555 ORTHO05D006923 5.3e-158 561.6 415 72.3
Sc03g0008570 Simmondsia chinensis HOM05D005555 ORTHO05D006923 1.2e-157 560.5 389 74.6
BcaB02g11175 Brassica carinata HOM05D005555 ORTHO05D006923 2.0e-157 559.7 434 70.5
DCAR_001508 Daucus carota HOM05D005555 ORTHO05D006923 3.6e-154 548.9 438 69.6
CAN.G542.3 Capsicum annuum HOM05D005555 ORTHO05D006923 7.9e-154 547.7 442 67.2
BraA05t20906Z Brassica rapa HOM05D005555 ORTHO05D006923 8.8e-153 544.3 433 69.7
CDE04G3207 Ceratophyllum demersum HOM05D005555 ORTHO05D006923 2.6e-152 542.7 433 66.1
Nitab4.5_0000981g0050 Nicotiana tabacum HOM05D005555 ORTHO05D006923 5.7e-152 541.6 466 65.5
MD03G1200100 Malus domestica HOM05D005555 ORTHO05D006923 2.2e-151 539.7 439 67.0
unitig_744.g24404 Utricularia gibba HOM05D005555 ORTHO05D006923 2.8e-151 539.3 436 67.2
A05p19990 Brassica napus HOM05D005555 ORTHO05D006923 4.8e-151 538.5 433 69.7
CSS0007038 Camellia sinensis var. sinensis HOM05D005555 ORTHO05D006923 1.0e-148 530.8 458 66.2
MBI05_g12021_MAGBIO Magnolia biondii HOM05D005555 ORTHO05D006923 4.2e-147 525.4 435 66.7
BcaB07g33510 Brassica carinata HOM05D005555 ORTHO05D006923 1.6e-146 523.5 447 66.9
Haze_09680 Corylus avellana HOM05D005555 ORTHO05D006923 3.9e-145 518.8 503 62.2
Sabra11G0086200 Salix brachista HOM05D005555 ORTHO05D006923 1.1e-144 517.3 442 66.7
ATR0752G192 Amborella trichopoda HOM05D005555 ORTHO05D006923 2.0e-144 516.5 432 63.4
Cfa020338 Carpinus fangiana HOM05D005555 ORTHO05D006923 4.4e-144 515.4 394 73.1
AUR62018195 Chenopodium quinoa HOM05D005555 ORTHO05D006923 2.4e-142 509.6 443 63.7
Peaxi162Scf00660g00816 Petunia axillaris HOM05D005555 ORTHO05D006923 9.1e-142 507.7 405 68.9
RcHm_v2.0_Chr5g0039771 Rosa chinensis HOM05D005555 ORTHO05D006923 1.6e-141 506.9 426 62.9
vmacro11723 Vaccinium macrocarpon HOM05D005555 ORTHO05D006923 3.2e-139 499.2 523 56.6
HanXRQChr05g0134351 Helianthus annuus HOM05D005555 ORTHO05D006923 4.0e-137 492.3 441 63.9
FvH4_3g22760 Fragaria vesca HOM05D005555 ORTHO05D006923 4.4e-136 488.8 431 61.5
HPP92_010410 Vanilla planifolia HOM05D005555 ORTHO05D006923 4.1e-134 482.3 433 61.9
arahy.Tifrunner.gnm1.ann1.92YVPD Arachis hypogaea HOM05D005555 ORTHO05D006923 5.3e-134 481.9 437 61.8
Dinv40759 Davidia involucrata HOM05D005555 ORTHO05D006923 1.3e-132 477.2 398 69.1
Gohir.D05G370300 Gossypium hirsutum HOM05D005555 ORTHO05D006923 1.1e-131 474.2 389 68.1
Gohir.D05G369900 Gossypium hirsutum HOM05D005555 ORTHO05D006923 3.2e-131 472.6 441 62.8
SMO352G0045 Selaginella moellendorffii HOM05D005555 ORTHO05D006923 4.5e-125 452.2 418 60.0
FvH4_6g31880 Fragaria vesca HOM05D005555 ORTHO05D006923 8.6e-124 448.0 334 73.1
FAN16G3656 Fragaria x ananassa HOM05D005555 ORTHO05D006923 1.1e-123 447.6 414 59.4
Prupe.4G214200 Prunus persica HOM05D005555 ORTHO05D006923 6.1e-122 441.8 374 64.4
Sed0020027 Sechium edule HOM05D005555 ORTHO05D006923 8.0e-122 441.4 406 63.3
Zm00001eb230170 Zea mays HOM05D005555 ORTHO05D006923 1.0e-121 441.0 433 57.7
arahy.Tifrunner.gnm1.ann1.21WID0 Arachis hypogaea HOM05D005555 ORTHO05D006923 2.3e-121 439.9 444 57.2
Mapoly0032s0110 Marchantia polymorpha HOM05D005555 ORTHO05D006923 5.7e-120 435.3 440 53.9
Pp3c17_11280 Physcomitrium patens HOM05D005555 ORTHO05D006923 4.3e-115 419.1 420 55.2
AUR62038682 Chenopodium quinoa HOM05D005555 ORTHO05D006923 6.6e-108 395.2 441 52.4
FAN25G0297 Fragaria x ananassa HOM05D005555 ORTHO05D006923 8.0e-106 388.3 370 57.8
Medtr5g049150 Medicago truncatula HOM05D005555 ORTHO05D006923 2.1e-101 373.6 217 88.0
CBR_g19746 Chara braunii HOM05D005555 ORTHO05D006923 2.8e-66 256.9 398 38.9
CBR_g6714 Chara braunii HOM05D005555 ORTHO05D006923 7.6e-56 222.2 434 35.5
Os02g0119100 Oryza sativa ssp. japonica HOM05D005555 ORTHO05D006923 4.1e-41 173.3 207 51.2
TPR.G5733 Trifolium pratense HOM05D005555 ORTHO05D006923 1.2e-32 145.2 84 85.7
arahy.Tifrunner.gnm1.ann1.C7XXCR Arachis hypogaea HOM05D005555 ORTHO05D082991 2.2e-18 97.8 123 52.8
Lsat_1_v5_gn_9_94361 Lactuca sativa HOM05D005555 ORTHO05D006923 7.0e-17 92.8 55 80.0
Hma1.2p1_0206F.1_g087650 Hydrangea macrophylla HOM05D005555 ORTHO05D006923 3.5e-16 90.5 45 93.3
Hma1.2p1_0545F.1_g176020 Hydrangea macrophylla HOM05D005555 ORTHO05D006923 3.5e-16 90.5 45 93.3
Actinidia13832 Actinidia chinensis HOM05D005555 ORTHO05D006923 1.9e-06 58.2 48 60.4


User provided reference genes

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