Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G3378 Trifolium pratense HOM05D005777 ORTHO05D006854 3.2e-270 934.5 472 100.0
Psat7g024000 Pisum sativum HOM05D005777 ORTHO05D006854 2.0e-158 563.1 444 67.8
Medtr8g099725 Medicago truncatula HOM05D005777 ORTHO05D006854 1.3e-157 560.5 442 69.9
Ca_17460_v3 Cicer arietinum L. HOM05D005777 ORTHO05D006854 2.0e-134 483.4 445 61.3
Glyma.08G025000 Glycine max HOM05D005777 ORTHO05D006854 3.7e-125 452.6 447 56.8
Lj4g0026879 Lotus japonicus HOM05D005777 ORTHO05D006854 1.8e-124 450.3 441 56.9
Glyma.05G218900 Glycine max HOM05D005777 ORTHO05D006854 5.4e-124 448.7 445 56.4
Lalb_Chr05g0223951 Lupinus albus HOM05D005777 ORTHO05D006854 7.3e-113 411.8 475 51.6
Phvul.002G300700 Phaseolus vulgaris HOM05D005777 ORTHO05D006854 6.8e-111 405.2 447 51.9
VMungo0251G0419 Vigna mungo HOM05D003100 ORTHO05D003533 7.6e-94 348.6 440 46.8
TWI60G0567 Tripterygium wilfordii HOM05D005777 ORTHO05D006854 2.5e-81 307.0 452 42.0
Prupe.5G124500 Prunus persica HOM05D005777 ORTHO05D006854 1.8e-79 300.8 431 43.6
RcHm_v2.0_Chr7g0186161 Rosa chinensis HOM05D005777 ORTHO05D006854 1.2e-78 298.1 451 43.2
Atru.chr9.1942 Acer truncatum HOM05D005777 ORTHO05D006854 7.6e-78 295.4 479 40.9
Cfa011969 Carpinus fangiana HOM05D005777 ORTHO05D006854 3.9e-74 283.1 438 41.1
FvH4_5g11630 Fragaria vesca HOM05D005777 ORTHO05D006854 5.1e-74 282.7 450 41.8
FAN04G0792 Fragaria x ananassa HOM05D005777 ORTHO05D006854 8.7e-74 282.0 450 41.6
QL02p029612 Quercus lobata HOM05D005777 ORTHO05D006854 2.5e-73 280.4 424 41.3
FAN13G2465 Fragaria x ananassa HOM05D005777 ORTHO05D006854 8.1e-72 275.4 451 40.6
vmacro13879 Vaccinium macrocarpon HOM05D005777 ORTHO05D006854 1.4e-71 274.6 489 39.5
PGR042G2859 Punica granatum HOM05D005777 ORTHO05D006854 2.6e-70 270.4 440 40.2
Lj8C204T6 Lonicera japonica HOM05D005777 ORTHO05D006854 4.5e-70 269.6 455 38.5
Haze_09107 Corylus avellana HOM05D005777 ORTHO05D006854 7.6e-70 268.9 423 40.7
CANSAT21G0853 Cannabis sativa HOM05D005777 ORTHO05D006854 1.3e-66 258.1 452 36.7
Nitab4.5_0002367g0090 Nicotiana tabacum HOM05D005777 ORTHO05D006854 2.3e-66 257.3 418 40.7
Nitab4.5_0002793g0030 Nicotiana tabacum HOM05D005777 ORTHO05D006854 1.5e-65 254.6 455 38.5
Cpa.g.sc79.3 Carica papaya HOM05D005777 ORTHO05D006854 2.8e-64 250.4 455 38.5
Sabra07G0049700 Salix brachista HOM05D005777 ORTHO05D006854 8.2e-64 248.8 494 37.4
Eucgr.E00747 Eucalyptus grandis HOM05D005777 ORTHO05D006854 1.8e-63 247.7 494 35.4
MD06G1111700 Malus domestica HOM05D005777 ORTHO05D006854 4.5e-62 243.0 401 40.9
Rhsim07G0080700 Rhododendron simsii HOM05D005777 ORTHO05D006854 4.5e-62 243.0 428 38.1
TAR629G1222 Trochodendron aralioides HOM05D005777 ORTHO05D006854 2.9e-61 240.4 418 38.8
CsaV3_5G001940 Cucumis sativus L. HOM05D005777 ORTHO05D006854 4.9e-61 239.6 406 38.7
CSS0003604 Camellia sinensis var. sinensis HOM05D005777 ORTHO05D006854 1.4e-60 238.0 428 37.4
Potri.007G058050 Populus trichocarpa HOM05D005777 ORTHO05D006854 2.5e-60 237.3 448 36.8
MELO3C033830.2 Cucumis melo HOM05D005777 ORTHO05D006854 9.3e-60 235.3 400 37.2
Eucgr.E00956 Eucalyptus grandis HOM05D005777 ORTHO05D006854 1.6e-59 234.6 494 34.0
Sed0007946 Sechium edule HOM05D005777 ORTHO05D006854 2.1e-59 234.2 397 37.5
Peaxi162Scf00074g00526 Petunia axillaris HOM05D005777 ORTHO05D006854 1.0e-58 231.9 420 40.0
Eucgr.E00744 Eucalyptus grandis HOM05D005777 ORTHO05D006854 1.8e-58 231.1 493 34.1
Lsat_1_v5_gn_6_83361 Lactuca sativa HOM05D005777 ORTHO05D006854 1.6e-56 224.6 409 37.7
Sopen08g030950 Solanum pennellii HOM05D005777 ORTHO05D006854 3.1e-55 220.3 457 36.8
PGSC0003DMG400012134 Solanum tuberosum HOM05D005777 ORTHO05D006854 4.1e-55 219.9 428 37.6
Nn1g00296 Nelumbo nucifera HOM05D005777 ORTHO05D006854 6.9e-55 219.2 422 35.5
Solyc08g082720.4 Solanum lycopersicum HOM05D005777 ORTHO05D006854 6.9e-55 219.2 480 36.5
Thecc.08G166000 Theobroma cacao HOM05D005777 ORTHO05D006854 6.9e-55 219.2 397 37.5
Aqoxy5G04312 Aquilegia oxysepala HOM05D005777 ORTHO05D006854 2.6e-54 217.2 470 36.0
ECA240G0322 Erigeron canadensis HOM05D005777 ORTHO05D006854 1.0e-53 215.3 463 36.1
CAN.G567.32 Capsicum annuum HOM05D005777 ORTHO05D006854 3.8e-53 213.4 446 36.5
MBI07_g24771_MAGBIO Magnolia biondii HOM05D005777 ORTHO05D006854 5.0e-53 213.0 441 36.1
HanXRQChr03g0083721 Helianthus annuus HOM05D005777 ORTHO05D006854 1.4e-52 211.5 452 35.6
Manes.01G049500 Manihot esculenta HOM05D005777 ORTHO05D006854 3.0e-50 203.8 331 40.8
FAN18G2480 Fragaria x ananassa HOM05D005777 ORTHO05D006854 1.1e-49 201.8 395 33.9
Migut.E00735 Erythranthe guttata HOM05D005777 ORTHO05D006854 9.1e-47 192.2 392 34.9
PSO170G4328 Papaver somniferum HOM05D005777 ORTHO05D006854 1.5e-46 191.4 425 31.8
Migut.E01651 Erythranthe guttata HOM05D005777 ORTHO05D006854 2.1e-43 181.0 327 37.3
Eucgr.E00752 Eucalyptus grandis HOM05D005777 ORTHO05D006854 1.0e-42 178.7 496 29.4
Oeu055021.1 Olea europaea HOM05D005777 ORTHO05D006854 1.8e-42 177.9 319 38.2
EL10Ac5g12951 Beta vulgaris HOM05D005777 ORTHO05D006854 2.0e-41 174.5 317 36.0
CiPaw.11G117200 Carya illinoinensis HOM05D005777 ORTHO05D006854 2.2e-40 171.0 328 37.2
Ah.12g052840 Amaranthus hybridus HOM05D005777 ORTHO05D006854 3.7e-40 170.2 339 38.1
DCAR_006511 Daucus carota HOM05D005777 ORTHO05D006854 7.0e-39 166.0 235 42.1
Cc08_g16390 Coffea canephora HOM05D005777 ORTHO05D006854 2.0e-38 164.5 311 38.3
FAN18G2579 Fragaria x ananassa HOM05D005777 ORTHO05D006854 5.0e-37 159.8 191 48.2
Sc01g0010430 Simmondsia chinensis HOM05D005777 ORTHO05D006854 5.0e-37 159.8 304 38.2
Hund14203 Selenicereus undatus HOM05D005777 ORTHO05D006854 1.4e-36 158.3 325 36.0
COL.COLO4_25066 Corchorus olitorius HOM05D000316 ORTHO05D006854 1.9e-36 157.9 202 44.6
FAN08G0729 Fragaria x ananassa HOM05D005777 ORTHO05D006854 1.9e-36 157.9 343 31.5
Actinidia22740 Actinidia chinensis HOM05D005777 ORTHO05D006854 3.2e-36 157.1 361 33.8
Ciclev10023944m.g Citrus clementina HOM05D005777 ORTHO05D006854 1.3e-32 145.2 188 42.6
Eucgr.E00762 Eucalyptus grandis HOM05D005777 ORTHO05D006854 2.8e-32 144.1 343 31.5
Gohir.A02G088000 Gossypium hirsutum HOM05D005777 ORTHO05D006854 9.1e-31 139.0 313 36.1
AUR62019875 Chenopodium quinoa HOM05D005777 ORTHO05D006854 2.0e-30 137.9 222 36.9
Gorai.005G117300 Gossypium raimondii HOM05D005777 ORTHO05D006854 3.5e-30 137.1 323 35.3
Duzib116G0305 Durio zibethinus HOM05D005777 ORTHO05D006854 3.8e-29 133.7 244 35.2
Ciclev10023874m.g Citrus clementina HOM05D005777 ORTHO05D006854 4.2e-28 130.2 147 49.7
Eucgr.E00939 Eucalyptus grandis HOM05D005777 ORTHO05D006854 1.2e-27 128.6 239 36.8
GSVIVG01019597001 Vitis vinifera HOM05D005777 ORTHO05D006854 2.1e-27 127.9 108 61.1
Dinv37498 Davidia involucrata HOM05D005777 ORTHO05D006854 2.7e-27 127.5 107 57.9
HPP92_024143 Vanilla planifolia HOM05D005777 ORTHO05D006854 2.7e-27 127.5 286 32.2
SGA_v2.0_scaffold74G24601 Striga asiatica HOM05D005777 ORTHO05D006854 1.5e-25 121.7 346 30.3
ATR0602G092 Amborella trichopoda HOM05D005777 ORTHO05D006854 2.0e-25 121.3 297 34.3
Lsat_1_v5_gn_5_82800 Lactuca sativa HOM05D005777 ORTHO05D006854 2.0e-25 121.3 175 41.7
Eucgr.E00894 Eucalyptus grandis HOM05D005777 ORTHO05D006854 5.0e-21 106.7 130 46.9
Eucgr.E00726 Eucalyptus grandis HOM05D005777 ORTHO05D006854 1.1e-20 105.5 157 40.8
FAN04G0565 Fragaria x ananassa HOM05D005777 ORTHO05D006854 3.2e-20 104.0 99 56.6
CDE03G0022 Ceratophyllum demersum HOM05D002476 ORTHO05D002652 9.4e-20 102.4 107 50.5
Eucgr.E00895 Eucalyptus grandis HOM05D005777 ORTHO05D006854 1.2e-19 102.1 112 45.5
Eucgr.E00912 Eucalyptus grandis HOM05D005777 ORTHO05D006854 1.6e-19 101.7 100 52.0
Eucgr.E00900 Eucalyptus grandis HOM05D005777 ORTHO05D006854 2.7e-19 100.9 157 39.5
Eucgr.E00749 Eucalyptus grandis HOM05D005777 ORTHO05D006854 8.0e-19 99.4 157 41.4
Eucgr.E00969 Eucalyptus grandis HOM05D005777 ORTHO05D006854 8.0e-19 99.4 157 41.4
THA.LOC104813047 Tarenaya hassleriana HOM05D005777 ORTHO05D006854 1.8e-18 98.2 156 42.9
Eucgr.E00696 Eucalyptus grandis HOM05D005777 ORTHO05D006854 5.2e-18 96.7 158 37.3
Eucgr.E01013 Eucalyptus grandis HOM05D005777 ORTHO05D006854 5.2e-18 96.7 157 40.8
Lsat_1_v5_gn_9_112141 Lactuca sativa HOM05D005777 ORTHO05D006854 1.2e-17 95.5 86 57.0
Thhalv10028849m.g Eutrema salsugineum HOM05D005777 ORTHO05D006854 2.0e-17 94.7 153 39.9
SHI06955 Sapria himalayana HOM05D005777 ORTHO05D006854 1.1e-15 89.0 82 58.5
Sp6g06640 Schrenkiella parvula HOM05D005777 ORTHO05D006854 1.4e-15 88.6 153 40.5
Eucgr.H03743 Eucalyptus grandis HOM05D005777 ORTHO05D006854 5.4e-15 86.7 95 51.6
Os09g0363400 Oryza sativa ssp. japonica HOM05D005777 ORTHO05D006854 5.4e-15 86.7 341 26.1
BraA09t38398Z Brassica rapa HOM05D005777 ORTHO05D006854 3.5e-14 84.0 141 41.8
Actinidia27306 Actinidia chinensis HOM05D005777 ORTHO05D006854 4.5e-14 83.6 84 50.0
CARHR255730 Cardamine hirsuta HOM05D005777 ORTHO05D006854 4.5e-14 83.6 165 37.0
Carub.0006s2962 Capsella rubella HOM05D005777 ORTHO05D006854 1.0e-13 82.4 152 34.2
C09p35860 Brassica napus HOM05D005777 ORTHO05D006854 1.7e-13 81.6 146 39.7
Aa31LG9G11240 Aethionema arabicum HOM05D005777 ORTHO05D006854 2.3e-13 81.3 87 51.7
QL08p034398 Quercus lobata HOM05D000176 ORTHO05D000106 2.9e-13 80.9 86 45.3
AL6G44960 Arabidopsis lyrata HOM05D005777 ORTHO05D006854 3.8e-13 80.5 153 35.9
BcaC04g21086 Brassica carinata HOM05D005777 ORTHO05D006854 3.8e-13 80.5 145 40.0
AUR62007011 Chenopodium quinoa HOM05D005777 ORTHO05D006854 3.8e-13 80.5 209 29.2
QL06p042986 Quercus lobata HOM05D000529 ORTHO05D000472 3.8e-13 80.5 86 45.3
AT4G10890 Arabidopsis thaliana HOM05D005777 ORTHO05D006854 5.0e-13 80.1 153 36.6
Eucgr.E00686 Eucalyptus grandis HOM05D005777 ORTHO05D006854 8.6e-13 79.3 91 45.1
BolC9t56419H Brassica oleracea HOM05D005777 ORTHO05D006854 1.9e-12 78.2 146 39.0
A09p28290 Brassica napus HOM05D005777 ORTHO05D006854 3.3e-12 77.4 141 39.0
BcaB01g01556 Brassica carinata HOM05D005777 ORTHO05D006854 4.2e-12 77.0 155 38.7
Gohir.D02G103200 Gossypium hirsutum HOM05D005777 ORTHO05D006854 6.1e-11 73.2 130 33.8
Lsat_1_v5_gn_3_40061 Lactuca sativa HOM05D005777 ORTHO05D006854 2.2e-08 64.7 89 47.2
AagrBONN_evm.TU.Sc2ySwM_368.2767 Anthoceros agrestis HOM05D005777 ORTHO05D006854 1.1e-07 62.4 91 42.9
Hma1.2p1_0338F.1_g129700 Hydrangea macrophylla HOM05D005777 ORTHO05D006854 3.2e-07 60.8 51 56.9
Eucgr.H03760 Eucalyptus grandis HOM05D005777 ORTHO05D006854 7.0e-07 59.7 77 49.4
PSO063G6181 Papaver somniferum HOM05D005777 ORTHO05D006854 1.2e-06 58.9 44 59.1
FAN18G0036 Fragaria x ananassa HOM05D005777 ORTHO05D006854 5.9e-06 56.6 31 80.6


User provided reference genes

Program Settings