Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G33779 Trifolium pratense HOM05D006936 ORTHO05D008273 4.7e-100 367.9 185 100.0
Ca_19852_v3 Cicer arietinum L. HOM05D006936 ORTHO05D008273 1.2e-84 316.6 185 85.9
Medtr3g052260 Medicago truncatula HOM05D006936 ORTHO05D008273 1.6e-84 316.2 185 85.4
Psat5g178440 Pisum sativum HOM05D006936 ORTHO05D008273 9.3e-80 300.4 186 82.3
Glyma.08G317000 Glycine max HOM05D006936 ORTHO05D008273 3.5e-71 271.9 185 75.1
VMungo0540G1312 Vigna mungo HOM05D006936 ORTHO05D008273 7.9e-71 270.8 185 72.4
Phvul.006G044500 Phaseolus vulgaris HOM05D006936 ORTHO05D008273 1.0e-70 270.4 185 72.4
Lj6g0001928 Lotus japonicus HOM05D006936 ORTHO05D008273 8.7e-70 267.3 185 75.1
Glyma.18G095900 Glycine max HOM05D006936 ORTHO05D008273 2.5e-69 265.8 183 72.1
Lalb_Chr20g0113821 Lupinus albus HOM05D006936 ORTHO05D008273 2.0e-66 256.1 188 69.1
Hma1.2p1_0738F.1_g211120 Hydrangea macrophylla HOM05D006936 ORTHO05D008273 1.2e-63 246.9 189 67.7
Hma1.2p1_2518F.1_g323766 Hydrangea macrophylla HOM05D006936 ORTHO05D008273 1.2e-63 246.9 189 67.7
GSVIVG01037658001 Vitis vinifera HOM05D006936 ORTHO05D008273 2.1e-63 246.1 185 68.1
Haze_09683 Corylus avellana HOM05D006936 ORTHO05D008273 6.0e-63 244.6 187 64.7
Prupe.4G214700 Prunus persica HOM05D006936 ORTHO05D008273 1.0e-62 243.8 185 64.3
ClCG10G005400 Citrullus lanatus HOM05D006936 ORTHO05D008273 2.3e-62 242.7 185 66.5
Cpa.g.sc12.300 Carica papaya HOM05D006936 ORTHO05D008273 2.5e-61 239.2 185 63.8
Potri.003G122100 Populus trichocarpa HOM05D006936 ORTHO05D008273 2.5e-61 239.2 186 66.1
CsaV3_3G005130 Cucumis sativus L. HOM05D006936 ORTHO05D008273 7.4e-61 237.7 185 65.4
Thecc.07G035400 Theobroma cacao HOM05D006936 ORTHO05D008273 7.4e-61 237.7 185 64.9
DCAR_022566 Daucus carota HOM05D006936 ORTHO05D008273 1.3e-60 236.9 189 65.6
Gohir.D01G067300 Gossypium hirsutum HOM05D006936 ORTHO05D008273 1.6e-60 236.5 185 65.4
MD11G1216700 Malus domestica HOM05D006936 ORTHO05D008273 1.6e-60 236.5 185 63.8
CiPaw.11G190300 Carya illinoinensis HOM05D006936 ORTHO05D008273 2.1e-60 236.1 186 65.6
Gorai.002G089200 Gossypium raimondii HOM05D006936 ORTHO05D008273 2.8e-60 235.7 185 65.4
arahy.Tifrunner.gnm1.ann1.MX8M57 Arachis hypogaea HOM05D006936 ORTHO05D008273 3.7e-60 235.3 154 77.3
CSS0049611 Camellia sinensis var. sinensis HOM05D006936 ORTHO05D008273 1.1e-59 233.8 187 64.7
TAR624G1327 Trochodendron aralioides HOM05D006936 ORTHO05D008273 1.1e-59 233.8 192 65.6
Ciclev10009642m.g Citrus clementina HOM05D006936 ORTHO05D008273 3.1e-59 232.3 185 64.3
arahy.Tifrunner.gnm1.ann1.HAV09U Arachis hypogaea HOM05D006936 ORTHO05D008273 6.9e-59 231.1 154 76.0
Manes.03G129900 Manihot esculenta HOM05D006936 ORTHO05D008273 9.0e-59 230.7 185 64.3
Eucgr.F03471 Eucalyptus grandis HOM05D006936 ORTHO05D008273 2.0e-58 229.6 186 61.8
RcHm_v2.0_Chr5g0040171 Rosa chinensis HOM05D006936 ORTHO05D008273 3.4e-58 228.8 187 61.5
Duzib213G0701 Durio zibethinus HOM05D006936 ORTHO05D008273 4.5e-58 228.4 185 64.3
Gohir.A01G080100 Gossypium hirsutum HOM05D006936 ORTHO05D008273 2.2e-57 226.1 185 63.8
Migut.H01824 Erythranthe guttata HOM05D006936 ORTHO05D008273 4.9e-57 224.9 185 61.1
TWI39G1260 Tripterygium wilfordii HOM05D006936 ORTHO05D008273 4.9e-57 224.9 186 62.4
FAN21G0204 Fragaria x ananassa HOM05D006936 ORTHO05D008273 6.5e-57 224.6 185 62.2
FvH4_3g22870 Fragaria vesca HOM05D006936 ORTHO05D008273 8.4e-57 224.2 185 62.2
FAN11G3489 Fragaria x ananassa HOM05D006936 ORTHO05D008273 8.4e-57 224.2 185 62.2
BcaNung03571 Brassica carinata HOM05D006936 ORTHO05D008273 7.1e-56 221.1 187 60.4
Potri.001G109600 Populus trichocarpa HOM05D006936 ORTHO05D008273 7.1e-56 221.1 186 62.9
TWI38G2356 Tripterygium wilfordii HOM05D006936 ORTHO05D008273 1.2e-55 220.3 187 62.0
Cc05_g13850 Coffea canephora HOM05D006936 ORTHO05D008273 1.6e-55 219.9 190 64.2
Carub.0007s1390 Capsella rubella HOM05D006936 ORTHO05D008273 3.5e-55 218.8 187 59.4
AL7G25870 Arabidopsis lyrata HOM05D006936 ORTHO05D008273 4.6e-55 218.4 187 59.9
PSO210G5704 Papaver somniferum HOM05D006936 ORTHO05D008273 4.6e-55 218.4 185 59.5
Aqoxy3G01790 Aquilegia oxysepala HOM05D006936 ORTHO05D008273 6.0e-55 218.0 196 58.2
HanXRQChr03g0076461 Helianthus annuus HOM05D006936 ORTHO05D008273 1.3e-54 216.9 189 59.3
PSO832G3825 Papaver somniferum HOM05D006936 ORTHO05D008273 1.3e-54 216.9 186 60.8
Sp7g24910 Schrenkiella parvula HOM05D006936 ORTHO05D008273 3.0e-54 215.7 187 58.3
BcaC07g38260 Brassica carinata HOM05D006936 ORTHO05D008273 6.7e-54 214.5 187 58.3
Lsat_1_v5_gn_9_93840 Lactuca sativa HOM05D006936 ORTHO05D008273 8.7e-54 214.2 187 59.9
THA.LOC104813424 Tarenaya hassleriana HOM05D006936 ORTHO05D008273 1.5e-53 213.4 190 57.4
MSTRG.12976 Avicennia marina HOM05D006936 ORTHO05D008273 2.5e-53 212.6 197 59.4
PGSC0003DMG401022215 Solanum tuberosum HOM05D006936 ORTHO05D008273 2.5e-53 212.6 185 58.9
AT4G26965 Arabidopsis thaliana HOM05D006936 ORTHO05D008273 4.3e-53 211.8 187 59.4
C01p23100 Brassica napus HOM05D006936 ORTHO05D008273 4.3e-53 211.8 188 58.5
Solyc07g064640.3 Solanum lycopersicum HOM05D006936 ORTHO05D008273 4.3e-53 211.8 185 58.4
Sopen07g032840 Solanum pennellii HOM05D006936 ORTHO05D008273 4.3e-53 211.8 185 58.9
PGR031G2182 Punica granatum HOM05D006936 ORTHO05D008273 7.4e-53 211.1 186 59.7
QL08p009960 Quercus lobata HOM05D006936 ORTHO05D008273 1.3e-52 210.3 231 50.6
HPP92_004131 Vanilla planifolia HOM05D006936 ORTHO05D008273 1.6e-52 209.9 187 58.8
unitig_8.g4785 Utricularia gibba HOM05D006936 ORTHO05D008273 2.8e-52 209.1 185 57.3
A01p18140 Brassica napus HOM05D006936 ORTHO05D008273 1.1e-51 207.2 190 55.8
C08p10070 Brassica napus HOM05D006936 ORTHO05D008273 2.4e-51 206.1 187 57.8
BolC8t48685H Brassica oleracea HOM05D006936 ORTHO05D008273 2.4e-51 206.1 187 57.8
ECA240G2843 Erigeron canadensis HOM05D006936 ORTHO05D008273 5.3e-51 204.9 173 62.4
BraA01t01769Z Brassica rapa HOM05D006936 ORTHO05D008273 1.2e-50 203.8 198 53.5
EL10Ac4g07798 Beta vulgaris HOM05D006936 ORTHO05D008273 2.0e-50 203.0 189 55.6
BolC1t02244H Brassica oleracea HOM05D006936 ORTHO05D008273 4.5e-50 201.8 201 52.7
BcaB03g12517 Brassica carinata HOM05D006936 ORTHO05D008273 7.6e-50 201.1 189 56.6
Sc16g0005990 Simmondsia chinensis HOM05D006936 ORTHO05D008273 1.3e-49 200.3 190 55.3
SGA_v2.0_scaffold8G04322 Striga asiatica HOM05D006936 ORTHO05D008273 2.9e-49 199.1 189 56.1
Hma1.2p1_0738F.1_g211130 Hydrangea macrophylla HOM05D006936 ORTHO05D008273 1.1e-48 197.2 147 70.1
Cfa020336 Carpinus fangiana HOM05D000228 ORTHO05D001122 1.4e-48 196.8 135 68.9
Oeu048401.1 Olea europaea HOM05D006936 ORTHO05D008273 1.9e-48 196.4 134 71.6
Rhsim06G0217500 Rhododendron simsii HOM05D000228 ORTHO05D001122 4.2e-48 195.3 163 63.2
Sed0005355 Sechium edule HOM05D006936 ORTHO05D008273 4.2e-48 195.3 134 70.1
Sabra01G0082900 Salix brachista HOM05D006936 ORTHO05D008273 7.2e-48 194.5 146 67.8
Peaxi162Scf00235g00220 Petunia axillaris HOM05D006936 ORTHO05D008273 7.9e-47 191.0 214 51.9
Os09g0500200 Oryza sativa ssp. japonica HOM05D006936 ORTHO05D008273 1.0e-46 190.7 187 54.5
Nn1g03514 Nelumbo nucifera HOM05D006936 ORTHO05D008273 5.1e-46 188.3 191 54.5
Thhalv10026517m.g Eutrema salsugineum HOM05D006936 ORTHO05D008273 7.4e-45 184.5 135 65.9
FAN16G3045 Fragaria x ananassa HOM05D006936 ORTHO05D008273 1.6e-44 183.3 207 48.3
BraA08t34018Z Brassica rapa HOM05D006936 ORTHO05D008273 2.8e-44 182.6 226 48.2
Nitab4.5_0007360g0030 Nicotiana tabacum HOM05D006936 ORTHO05D008273 1.1e-43 180.6 135 65.2
CAN.G337.138 Capsicum annuum HOM05D006936 ORTHO05D008273 1.8e-43 179.9 185 52.4
Nitab4.5_0003495g0030 Nicotiana tabacum HOM05D006936 ORTHO05D008273 2.4e-43 179.5 135 65.2
A08p20640 Brassica napus HOM05D006936 ORTHO05D008273 5.9e-42 174.9 169 57.4
Zm00001eb102230 Zea mays HOM05D006936 ORTHO05D008273 2.2e-41 172.9 186 50.5
CDE05G0574 Ceratophyllum demersum HOM05D006936 ORTHO05D008273 8.5e-41 171.0 135 65.9
ATR1094G005 Amborella trichopoda HOM05D006936 ORTHO05D008273 1.4e-40 170.2 152 58.6
CARHR234570 Cardamine hirsuta HOM05D006936 ORTHO05D008273 4.2e-40 168.7 152 55.9
MELO3C025377.2 Cucumis melo HOM05D006936 ORTHO05D008273 4.2e-40 168.7 206 50.0
MBI02_g21871_MAGBIO Magnolia biondii HOM05D006936 ORTHO05D008273 5.5e-40 168.3 227 44.5
CANSAT11G0469 Cannabis sativa HOM05D006936 ORTHO05D008273 1.2e-39 167.2 189 50.3
Dinv40761 Davidia involucrata HOM05D006936 ORTHO05D008273 1.4e-38 163.7 136 65.4
Sabra18G0079500 Salix brachista HOM05D006936 ORTHO05D008273 1.2e-34 150.6 133 58.6
Aa31LG5G12010 Aethionema arabicum HOM05D006936 ORTHO05D008273 2.0e-34 149.8 185 47.6
Atru.chr2.3444 Acer truncatum HOM05D006936 ORTHO05D008273 2.6e-34 149.4 101 67.3
vmacro02233 Vaccinium macrocarpon HOM05D006936 ORTHO05D008273 7.2e-32 141.4 91 72.5
Hma1.2p1_0738F.1_g211110 Hydrangea macrophylla HOM05D006936 ORTHO05D008273 9.7e-29 131.0 74 75.7
Actinidia24797 Actinidia chinensis HOM05D006936 ORTHO05D008273 2.2e-28 129.8 121 60.3
Hund23239 Selenicereus undatus HOM05D006936 ORTHO05D008273 6.3e-28 128.3 151 47.7
AUR62020430 Chenopodium quinoa HOM05D006936 ORTHO05D008273 4.5e-26 122.1 223 38.1
Hma1.2p1_0738F.1_g211140 Hydrangea macrophylla HOM05D006936 ORTHO05D008273 5.9e-26 121.7 123 59.3
Hma1.2p1_2518F.1_g323762 Hydrangea macrophylla HOM05D006936 ORTHO05D008273 5.9e-26 121.7 123 59.3
Os05g0538900 Oryza sativa ssp. japonica HOM05D006936 ORTHO05D008273 5.9e-26 121.7 91 64.8
arahy.Tifrunner.gnm1.ann1.XX62UZ Arachis hypogaea HOM05D006936 ORTHO05D008273 2.7e-23 112.8 112 60.7
Mapoly0093s0007 Marchantia polymorpha HOM05D006936 ORTHO05D008273 3.3e-21 105.9 186 37.6
Pp3c15_25830 Physcomitrium patens HOM05D006936 ORTHO05D008273 4.1e-19 99.0 181 34.8
Ah.06g185850 Amaranthus hybridus HOM05D006936 ORTHO05D008273 5.2e-14 82.0 112 48.2
SEGI_32271 Sequoiadendron giganteum HOM05D006301 ORTHO05D008273 6.1e-07 58.5 44 59.1
AUR62015785 Chenopodium quinoa HOM05D000355 ORTHO05D000227 2.3e-06 56.6 112 39.3
DCAR_000990 Daucus carota HOM05D006936 ORTHO05D008273 5.2e-06 55.5 64 51.6


User provided reference genes

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