Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G33768 Trifolium pratense HOM05D008051 ORTHO05D009905 6.4e-81 304.3 184 100.0
Glyma.18G093000 Glycine max HOM05D008051 ORTHO05D009905 4.5e-26 122.1 103 63.1
Glyma.02G292700 Glycine max HOM05D008051 ORTHO05D009905 8.8e-22 107.8 88 59.1
Glyma.14G021900 Glycine max HOM05D008051 ORTHO05D009905 5.7e-21 105.1 88 58.0
Lalb_Chr15g0081481 Lupinus albus HOM05D008051 ORTHO05D009905 4.8e-20 102.1 98 53.1
Phvul.006G046600 Phaseolus vulgaris HOM05D008051 ORTHO05D009905 2.4e-19 99.8 96 56.2
Oeu021430.1 Olea europaea HOM05D008051 ORTHO05D009905 1.0e-17 94.4 106 48.1
VMungo0540G2374 Vigna mungo HOM05D008051 ORTHO05D009905 2.9e-17 92.8 78 52.6
QL08p007021 Quercus lobata HOM05D008051 ORTHO05D009905 6.5e-17 91.7 94 50.0
TPR.G24073 Trifolium pratense HOM05D008051 ORTHO05D009905 8.5e-17 91.3 101 44.6
Dinv40787 Davidia involucrata HOM05D002089 ORTHO05D002848 1.9e-16 90.1 81 51.9
Phvul.008G269500 Phaseolus vulgaris HOM05D008051 ORTHO05D009905 2.5e-16 89.7 88 51.1
CAN.G407.107 Capsicum annuum HOM05D008051 ORTHO05D009905 3.2e-16 89.4 95 50.5
DCAR_009646 Daucus carota HOM05D008051 ORTHO05D009905 3.2e-16 89.4 85 50.6
Cfa020295 Carpinus fangiana HOM05D008051 ORTHO05D009905 1.6e-15 87.0 105 45.7
Solyc03g116450.1 Solanum lycopersicum HOM05D008051 ORTHO05D009905 2.1e-15 86.7 158 57.6
CANSAT11G0109 Cannabis sativa HOM05D008051 ORTHO05D009905 2.7e-15 86.3 89 47.2
Medtr7g025060 Medicago truncatula HOM05D008051 ORTHO05D009905 4.7e-15 85.5 91 45.1
Medtr8g442670 Medicago truncatula HOM05D008051 ORTHO05D009905 7.9e-15 84.7 104 44.2
MSTRG.4127 Avicennia marina HOM05D008051 ORTHO05D009905 1.0e-14 84.3 104 47.1
PGSC0003DMG401000629 Solanum tuberosum HOM05D008051 ORTHO05D009905 1.4e-14 84.0 157 58.0
Eucgr.F00712 Eucalyptus grandis HOM05D008051 ORTHO05D009905 3.0e-14 82.8 95 45.3
Medtr7g074360 Medicago truncatula HOM05D008051 ORTHO05D009905 3.0e-14 82.8 100 41.0
CSS0002609 Camellia sinensis var. sinensis HOM05D008051 ORTHO05D009905 3.9e-14 82.4 96 44.8
Medtr7g074340 Medicago truncatula HOM05D008051 ORTHO05D009905 3.9e-14 82.4 100 41.0
Medtr7g074350 Medicago truncatula HOM05D008051 ORTHO05D009905 3.9e-14 82.4 100 41.0
Haze_09724 Corylus avellana HOM05D008051 ORTHO05D009905 2.6e-13 79.7 100 43.0
Medtr5g063040 Medicago truncatula HOM05D008051 ORTHO05D009905 2.6e-13 79.7 99 41.4
Lalb_Chr04g0248291 Lupinus albus HOM05D008051 ORTHO05D009905 3.3e-13 79.3 153 53.6
Ah.04g166050 Amaranthus hybridus HOM05D000120 ORTHO05D002159 5.7e-13 78.6 93 45.2
Haze_21342 Corylus avellana HOM05D008051 ORTHO05D009905 5.7e-13 78.6 115 41.7
Rhsim06G0068300 Rhododendron simsii HOM05D008051 ORTHO05D009905 9.7e-13 77.8 91 45.1
Cfa012978 Carpinus fangiana HOM05D008051 ORTHO05D009905 1.3e-12 77.4 103 42.7
arahy.Tifrunner.gnm1.ann1.QA2XZ5 Arachis hypogaea HOM05D008051 ORTHO05D009905 1.7e-12 77.0 97 43.3
TWI39G0594 Tripterygium wilfordii HOM05D008051 ORTHO05D009905 2.8e-12 76.3 93 44.1
Haze_21340 Corylus avellana HOM05D008051 ORTHO05D009905 3.7e-12 75.9 115 40.9
Lalb_Chr17g0348611 Lupinus albus HOM05D008051 ORTHO05D009905 4.8e-12 75.5 100 40.0
Potri.001G355700 Populus trichocarpa HOM05D008051 ORTHO05D009905 6.3e-12 75.1 101 41.6
Migut.N00262 Erythranthe guttata HOM05D008051 ORTHO05D009905 8.2e-12 74.7 90 47.8
HanXRQChr08g0233561 Helianthus annuus HOM05D008051 ORTHO05D009905 1.4e-11 73.9 97 45.4
RcHm_v2.0_Chr5g0041151 Rosa chinensis HOM05D008051 ORTHO05D009905 1.4e-11 73.9 103 48.5
TPR.G1175 Trifolium pratense HOM05D008051 ORTHO05D009905 1.4e-11 73.9 79 45.6
Psat2g012240 Pisum sativum HOM05D008051 ORTHO05D009905 1.8e-11 73.6 52 50.0
PGR083G0962 Punica granatum HOM05D008051 ORTHO05D009905 1.8e-11 73.6 71 47.9
Thecc.07G029800 Theobroma cacao HOM05D008051 ORTHO05D009905 2.4e-11 73.2 95 44.2
Sabra11G0071300 Salix brachista HOM05D008051 ORTHO05D009905 3.1e-11 72.8 107 39.3
Atru.chr2.3503 Acer truncatum HOM05D007124 ORTHO05D008980 5.3e-11 72.0 82 47.6
EL10Ac4g07747 Beta vulgaris HOM05D008051 ORTHO05D009905 5.3e-11 72.0 73 46.6
Lsat_1_v5_gn_5_3180 Lactuca sativa HOM05D008051 ORTHO05D009905 5.3e-11 72.0 142 59.9
Cpa.g.sc12.286 Carica papaya HOM05D008051 ORTHO05D009905 7.0e-11 71.6 98 40.8
MD11G1211300 Malus domestica HOM05D008051 ORTHO05D009905 7.0e-11 71.6 112 42.9
CiPaw.11G193500 Carya illinoinensis HOM05D008051 ORTHO05D009905 9.1e-11 71.2 134 51.5
MBI18_g27147_MAGBIO Magnolia biondii HOM05D008051 ORTHO05D009905 9.1e-11 71.2 73 50.7
vmacro21377 Vaccinium macrocarpon HOM05D008051 ORTHO05D009905 9.1e-11 71.2 90 37.8
SGA_v2.0_scaffold196G40891 Striga asiatica HOM05D008051 ORTHO05D009905 1.2e-10 70.9 65 52.3
TPR.G1196 Trifolium pratense HOM05D008051 ORTHO05D009905 1.2e-10 70.9 92 40.2
Ciclev10010548m.g Citrus clementina HOM05D008051 ORTHO05D009905 1.6e-10 70.5 108 44.4
Prupe.4G221300 Prunus persica HOM05D008051 ORTHO05D009905 1.6e-10 70.5 90 42.2
Gohir.D01G070000 Gossypium hirsutum HOM05D008051 ORTHO05D009905 2.0e-10 70.1 100 43.0
Gorai.002G092500 Gossypium raimondii HOM05D008051 ORTHO05D009905 2.0e-10 70.1 100 43.0
Gohir.A01G083500 Gossypium hirsutum HOM05D008051 ORTHO05D009905 5.9e-10 68.6 98 39.8
Nn7g36860 Nelumbo nucifera HOM05D008051 ORTHO05D009905 5.9e-10 68.6 66 51.5
LjContig00272g0004425 Lotus japonicus HOM05D008051 ORTHO05D009905 7.7e-10 68.2 100 42.0
ATR0752G075 Amborella trichopoda HOM05D008051 ORTHO05D009905 1.0e-09 67.8 69 44.9
Duzib213G0687 Durio zibethinus HOM05D008051 ORTHO05D009905 1.0e-09 67.8 91 41.8
COL.COLO4_09713 Corchorus olitorius HOM05D008051 ORTHO05D009905 1.7e-09 67.0 97 40.2
SGA_v2.0_scaffold196G40892 Striga asiatica HOM05D008051 ORTHO05D009905 2.2e-09 66.6 54 55.6
Medtr5g093370 Medicago truncatula HOM05D008051 ORTHO05D009905 5.0e-09 65.5 88 38.6
THA.LOC104798770 Tarenaya hassleriana HOM05D012777 ORTHO05D009905 5.0e-09 65.5 151 47.0
Nn1g07253 Nelumbo nucifera HOM05D008051 ORTHO05D009905 8.5e-09 64.7 89 42.7
Medtr5g093340 Medicago truncatula HOM05D008051 ORTHO05D009905 4.2e-08 62.4 88 37.5
Medtr8g442580 Medicago truncatula HOM05D008051 ORTHO05D009905 1.2e-07 60.8 63 44.4
Manes.15G067600 Manihot esculenta HOM05D008051 ORTHO05D009905 3.6e-07 59.3 59 39.0
Cpa.g.sc12.259 Carica papaya HOM05D008051 ORTHO05D009905 1.8e-06 57.0 88 37.5
Sabra11G0072200 Salix brachista HOM05D008051 ORTHO05D009905 1.8e-06 57.0 95 36.8
Medtr3g053010 Medicago truncatula HOM05D008051 ORTHO05D009905 3.0e-06 56.2 102 36.3


User provided reference genes

Program Settings