Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G33738 Trifolium pratense HOM05D000913 ORTHO05D000687 1.1e-40 169.5 82 100.0
TPR.G27426 Trifolium pratense HOM05D000913 ORTHO05D000687 1.3e-25 119.4 96 68.8
Medtr3g082250 Medicago truncatula HOM05D000913 ORTHO05D000687 2.9e-25 118.2 88 69.3
Medtr3g082260 Medicago truncatula HOM05D000913 ORTHO05D000687 1.8e-22 109.0 93 63.4
Medtr1g041690 Medicago truncatula HOM05D000913 ORTHO05D000687 6.7e-22 107.1 93 63.4
Ca_27958_v3 Cicer arietinum L. HOM05D000913 ORTHO05D000687 4.3e-21 104.4 100 58.0
Psat5g105760 Pisum sativum HOM05D000913 ORTHO05D000687 2.2e-17 92.0 99 57.6
Medtr3g082210 Medicago truncatula HOM05D000913 ORTHO05D000687 8.4e-17 90.1 90 55.6
Thecc.01G201000 Theobroma cacao HOM05D000913 ORTHO05D000687 6.7e-14 80.5 93 50.5
Haze_12579 Corylus avellana HOM05D000913 ORTHO05D000687 1.6e-12 75.9 93 41.9
Nitab4.5_0006767g0020 Nicotiana tabacum HOM05D000913 ORTHO05D000687 6.2e-12 73.9 103 41.7
QL04p075739 Quercus lobata HOM05D000913 ORTHO05D000687 8.2e-12 73.6 93 45.2
QL04p075755 Quercus lobata HOM05D000913 ORTHO05D000687 8.2e-12 73.6 93 45.2
QL05p057732 Quercus lobata HOM05D000913 ORTHO05D000687 8.2e-12 73.6 93 45.2
Peaxi162Scf00111g00316 Petunia axillaris HOM05D000913 ORTHO05D000687 1.1e-11 73.2 99 44.4
GSVIVG01030135001 Vitis vinifera HOM05D000913 ORTHO05D000687 1.1e-11 73.2 91 47.3
DCAR_019659 Daucus carota HOM05D000913 ORTHO05D000687 1.8e-11 72.4 99 48.5
Gohir.A11G147350 Gossypium hirsutum HOM05D000913 ORTHO05D000687 1.8e-11 72.4 99 46.5
Nitab4.5_0002251g0110 Nicotiana tabacum HOM05D000913 ORTHO05D000687 1.8e-11 72.4 103 42.7
Potri.009G048100 Populus trichocarpa HOM05D000913 ORTHO05D000687 2.4e-11 72.0 89 48.3
Glyma.13G010600 Glycine max HOM05D000913 ORTHO05D000687 3.1e-11 71.6 91 50.5
QL04p075609 Quercus lobata HOM05D000913 ORTHO05D000687 3.1e-11 71.6 89 46.1
Ciclev10017001m.g Citrus clementina HOM05D000913 ORTHO05D000687 4.0e-11 71.2 98 49.0
Dinv05335 Davidia involucrata HOM05D000913 ORTHO05D000687 4.0e-11 71.2 93 46.2
Gohir.D11G154200 Gossypium hirsutum HOM05D000913 ORTHO05D000687 4.0e-11 71.2 96 46.9
Gorai.007G164300 Gossypium raimondii HOM05D000913 ORTHO05D000687 4.0e-11 71.2 96 46.9
Peaxi162Scf00111g10031 Petunia axillaris HOM05D000913 ORTHO05D000687 6.9e-11 70.5 104 43.3
TWI36G1369 Tripterygium wilfordii HOM05D000913 ORTHO05D000687 9.0e-11 70.1 77 51.9
QL04p066367 Quercus lobata HOM05D000913 ORTHO05D000687 1.2e-10 69.7 92 44.6
CiPaw.03G195900 Carya illinoinensis HOM05D000913 ORTHO05D000687 1.5e-10 69.3 103 40.8
TWI36G1096 Tripterygium wilfordii HOM05D000913 ORTHO05D000687 1.5e-10 69.3 85 44.7
Cfa014196 Carpinus fangiana HOM05D000913 ORTHO05D000687 2.6e-10 68.6 94 39.4
Gohir.D11G154000 Gossypium hirsutum HOM05D000913 ORTHO05D000687 2.6e-10 68.6 89 47.2
Gorai.001G189300 Gossypium raimondii HOM05D000913 ORTHO05D000687 2.6e-10 68.6 90 47.8
Gorai.007G164100 Gossypium raimondii HOM05D000913 ORTHO05D000687 2.6e-10 68.6 89 47.2
CiPaw.10G022900 Carya illinoinensis HOM05D000913 ORTHO05D000687 3.4e-10 68.2 95 38.9
CiPaw.10G023100 Carya illinoinensis HOM05D000913 ORTHO05D000687 3.4e-10 68.2 88 45.5
Gohir.D07G169300 Gossypium hirsutum HOM05D000913 ORTHO05D000687 3.4e-10 68.2 90 47.8
Potri.014G171300 Populus trichocarpa HOM05D000913 ORTHO05D000687 3.4e-10 68.2 93 43.0
Potri.009G048400 Populus trichocarpa HOM05D000913 ORTHO05D000687 4.5e-10 67.8 87 48.3
Gohir.A07G162700 Gossypium hirsutum HOM05D000913 ORTHO05D000687 5.8e-10 67.4 89 44.9
MD11G1039200 Malus domestica HOM05D000913 ORTHO05D000687 7.6e-10 67.0 93 44.1
Manes.13G059500 Manihot esculenta HOM05D000913 ORTHO05D000687 7.6e-10 67.0 94 44.7
FAN09G0650 Fragaria x ananassa HOM05D000913 ORTHO05D000687 1.0e-09 66.6 100 49.0
Potri.014G171500 Populus trichocarpa HOM05D000913 ORTHO05D000687 1.0e-09 66.6 93 41.9
Sabra01G0038000 Salix brachista HOM05D000913 ORTHO05D000687 1.0e-09 66.6 92 45.7
Cc05_g09770 Coffea canephora HOM05D000913 ORTHO05D000687 1.3e-09 66.2 103 41.7
Nitab4.5_0003051g0020 Nicotiana tabacum HOM05D000913 ORTHO05D000687 1.3e-09 66.2 100 40.0
QL04p075073 Quercus lobata HOM05D000913 ORTHO05D000687 1.3e-09 66.2 88 45.5
DCAR_008755 Daucus carota HOM05D000913 ORTHO05D000687 1.7e-09 65.9 99 40.4
MBI14_g16764_MAGBIO Magnolia biondii HOM05D000913 ORTHO05D000687 1.7e-09 65.9 92 48.9
Cfa014197 Carpinus fangiana HOM05D000913 ORTHO05D000687 2.2e-09 65.5 97 39.2
Cfa014195 Carpinus fangiana HOM05D000913 ORTHO05D000687 2.9e-09 65.1 88 45.5
MBI14_g16765_MAGBIO Magnolia biondii HOM05D000913 ORTHO05D000687 2.9e-09 65.1 91 48.4
Duzib138G1828 Durio zibethinus HOM05D000913 ORTHO05D000687 5.0e-09 64.3 98 43.9
Duzib138G0027 Durio zibethinus HOM05D000913 ORTHO05D000687 6.5e-09 63.9 96 46.9
Duzib138G1373 Durio zibethinus HOM05D000913 ORTHO05D000687 6.5e-09 63.9 100 46.0
Gohir.A04G003700 Gossypium hirsutum HOM05D000913 ORTHO05D000687 6.5e-09 63.9 85 48.2
FvH4_6g40280 Fragaria vesca HOM05D000913 ORTHO05D000687 8.4e-09 63.5 100 48.0
FAN14G2134 Fragaria x ananassa HOM05D000913 ORTHO05D000687 8.4e-09 63.5 100 48.0
Gohir.A11G147300 Gossypium hirsutum HOM05D000913 ORTHO05D000687 8.4e-09 63.5 89 44.9
Haze_12577 Corylus avellana HOM05D000913 ORTHO05D000687 1.1e-08 63.2 94 41.5
DCAR_021079 Daucus carota HOM05D000913 ORTHO05D000687 1.1e-08 63.2 103 42.7
Medtr5g007070 Medicago truncatula HOM05D000913 ORTHO05D000687 1.1e-08 63.2 51 62.7
Nitab4.5_0002919g0010 Nicotiana tabacum HOM05D000913 ORTHO05D000687 1.1e-08 63.2 95 44.2
TWI36G0980 Tripterygium wilfordii HOM05D000913 ORTHO05D000687 1.1e-08 63.2 90 42.2
Cc05_g09760 Coffea canephora HOM05D000913 ORTHO05D000687 1.4e-08 62.8 103 41.7
TPR.G12571 Trifolium pratense HOM05D003369 ORTHO05D004089 1.4e-08 62.8 41 78.0
TWI75G1832 Tripterygium wilfordii HOM05D000913 ORTHO05D000687 1.4e-08 62.8 80 41.2
Atru.chr1.4053 Acer truncatum HOM05D000913 ORTHO05D000687 1.9e-08 62.4 97 42.3
Dinv05336 Davidia involucrata HOM05D000913 ORTHO05D000687 1.9e-08 62.4 92 43.5
Duzib138G1058 Durio zibethinus HOM05D000913 ORTHO05D000687 1.9e-08 62.4 93 41.9
Haze_12574 Corylus avellana HOM05D004102 ORTHO05D000687 2.5e-08 62.0 88 42.0
MBI14_g16762_MAGBIO Magnolia biondii HOM05D000913 ORTHO05D000687 2.5e-08 62.0 92 42.4
MBI14_g17948_MAGBIO Magnolia biondii HOM05D000913 ORTHO05D000687 2.5e-08 62.0 99 44.4
Duzib138G1006 Durio zibethinus HOM05D000913 ORTHO05D000687 3.2e-08 61.6 97 41.2
Potri.009G048300 Populus trichocarpa HOM05D000913 ORTHO05D000687 3.2e-08 61.6 99 40.4
Prupe.6G030300 Prunus persica HOM05D000913 ORTHO05D000687 3.2e-08 61.6 86 41.9
MD03G1038100 Malus domestica HOM05D000913 ORTHO05D000687 5.5e-08 60.8 94 40.4
Cpa.g.sc136.67 Carica papaya HOM05D000913 ORTHO05D000687 7.1e-08 60.5 96 43.8
DCAR_015686 Daucus carota HOM05D000913 ORTHO05D000687 9.3e-08 60.1 95 41.1
SalBow5G0011 Salvia bowleyana HOM05D000913 ORTHO05D000687 1.2e-07 59.7 85 42.4
SalBow5G4967 Salvia bowleyana HOM05D000913 ORTHO05D000687 1.2e-07 59.7 85 42.4
ATR0751G174 Amborella trichopoda HOM05D000913 ORTHO05D000687 1.6e-07 59.3 87 36.8
FAN02G3220 Fragaria x ananassa HOM05D000913 ORTHO05D000687 1.6e-07 59.3 99 46.5
Aqoxy4G01749 Aquilegia oxysepala HOM05D000913 ORTHO05D000687 2.1e-07 58.9 99 40.4
CiPaw.10G022600 Carya illinoinensis HOM05D000913 ORTHO05D000687 2.1e-07 58.9 79 41.8
TPR.G10635 Trifolium pratense HOM05D000913 ORTHO05D000687 2.1e-07 58.9 86 46.5
TAR626G1783 Trochodendron aralioides HOM05D000913 ORTHO05D000687 2.1e-07 58.9 95 38.9
QL12p009146 Quercus lobata HOM05D000913 ORTHO05D000687 2.7e-07 58.5 94 40.4
Sabra14G0130500 Salix brachista HOM05D000913 ORTHO05D000687 2.7e-07 58.5 91 42.9
TAR629G2544 Trochodendron aralioides HOM05D000913 ORTHO05D000687 2.7e-07 58.5 89 42.7
DCAR_021080 Daucus carota HOM05D000913 ORTHO05D000687 3.5e-07 58.2 94 37.2
Migut.M00555 Erythranthe guttata HOM05D000913 ORTHO05D000687 3.5e-07 58.2 97 39.2
Migut.M00556 Erythranthe guttata HOM05D000913 ORTHO05D000687 3.5e-07 58.2 97 39.2
QL04p066360 Quercus lobata HOM05D000913 ORTHO05D000687 3.5e-07 58.2 94 37.2
QL04p074148 Quercus lobata HOM05D000913 ORTHO05D000687 3.5e-07 58.2 94 40.4
vmacro12051 Vaccinium macrocarpon HOM05D000913 ORTHO05D000687 3.5e-07 58.2 98 38.8
Ciclev10018068m.g Citrus clementina HOM05D000913 ORTHO05D000687 4.6e-07 57.8 102 37.3
Duzib211G0303 Durio zibethinus HOM05D000913 ORTHO05D000687 4.6e-07 57.8 99 41.4
Migut.M00531 Erythranthe guttata HOM05D000913 ORTHO05D000687 4.6e-07 57.8 97 39.2
Eucgr.K01377 Eucalyptus grandis HOM05D000913 ORTHO05D000687 4.6e-07 57.8 94 43.6
MBI14_g48110_MAGBIO Magnolia biondii HOM05D000913 ORTHO05D000687 4.6e-07 57.8 80 46.2
Prupe.6G025900 Prunus persica HOM05D000913 ORTHO05D000687 4.6e-07 57.8 91 46.2
HanXRQChr04g0126321 Helianthus annuus HOM05D000913 ORTHO05D000687 6.1e-07 57.4 76 44.7
MD03G1039000 Malus domestica HOM05D000913 ORTHO05D000687 6.1e-07 57.4 82 42.7
TAR629G0096 Trochodendron aralioides HOM05D000913 ORTHO05D000687 6.1e-07 57.4 89 41.6
Atru.chr1.4055 Acer truncatum HOM05D000913 ORTHO05D000687 7.9e-07 57.0 91 41.8
HanXRQChr01g0023431 Helianthus annuus HOM05D000913 ORTHO05D000687 7.9e-07 57.0 76 44.7
HanXRQChr01g0023451 Helianthus annuus HOM05D000913 ORTHO05D000687 7.9e-07 57.0 76 44.7
SalBow8G2786 Salvia bowleyana HOM05D000913 ORTHO05D000687 7.9e-07 57.0 98 37.8
Duzib133G0202 Durio zibethinus HOM05D000913 ORTHO05D000687 1.0e-06 56.6 98 38.8
Eucgr.K01374 Eucalyptus grandis HOM05D000913 ORTHO05D000687 1.0e-06 56.6 94 41.5
TAR626G0368 Trochodendron aralioides HOM05D000913 ORTHO05D000687 1.0e-06 56.6 79 44.3
Haze_09888 Corylus avellana HOM05D000913 ORTHO05D000687 1.3e-06 56.2 89 42.7
DCAR_019660 Daucus carota HOM05D000913 ORTHO05D000687 1.3e-06 56.2 103 39.8
FAN05G2837 Fragaria x ananassa HOM05D000913 ORTHO05D000687 1.3e-06 56.2 100 43.0
arahy.Tifrunner.gnm1.ann1.FE2NQF Arachis hypogaea HOM05D000913 ORTHO05D000687 1.8e-06 55.8 83 39.8
Aqoxy7G02044 Aquilegia oxysepala HOM05D000913 ORTHO05D000687 2.3e-06 55.5 96 39.6
BcaB03g14690 Brassica carinata HOM05D000913 ORTHO05D000687 2.3e-06 55.5 104 41.3
Cpa.g.sc136.68 Carica papaya HOM05D000913 ORTHO05D000687 2.3e-06 55.5 78 38.5
Gohir.A04G003500 Gossypium hirsutum HOM05D000913 ORTHO05D000687 2.3e-06 55.5 98 41.8
MBI14_g37420_MAGBIO Magnolia biondii HOM05D000913 ORTHO05D000687 2.3e-06 55.5 96 40.6
QL04p074166 Quercus lobata HOM05D000913 ORTHO05D000687 2.3e-06 55.5 89 37.1
vmacro12050 Vaccinium macrocarpon HOM05D000913 ORTHO05D000687 2.3e-06 55.5 66 45.5
HanXRQChr11g0329801 Helianthus annuus HOM05D000913 ORTHO05D000687 3.0e-06 55.1 99 38.4
MBI14_g17949_MAGBIO Magnolia biondii HOM05D000913 ORTHO05D000687 3.0e-06 55.1 97 44.3
Psat5g105560 Pisum sativum HOM05D000913 ORTHO05D000687 3.0e-06 55.1 39 69.2
Duzib268G0261 Durio zibethinus HOM05D000913 ORTHO05D000687 3.9e-06 54.7 85 43.5
ECA236G0352 Erigeron canadensis HOM05D000913 ORTHO05D000687 3.9e-06 54.7 71 42.3
Nn7g37142 Nelumbo nucifera HOM05D000913 ORTHO05D000687 3.9e-06 54.7 103 36.9
Sed0002303 Sechium edule HOM05D000913 ORTHO05D000687 3.9e-06 54.7 80 40.0
GSVIVG01030137001 Vitis vinifera HOM05D000913 ORTHO05D000687 3.9e-06 54.7 56 51.8
Cfa016930 Carpinus fangiana HOM05D000913 ORTHO05D000687 5.1e-06 54.3 98 41.8
QL04p066308 Quercus lobata HOM05D000913 ORTHO05D000687 5.1e-06 54.3 91 36.3
Sopen07g029550 Solanum pennellii HOM05D000913 ORTHO05D000687 5.1e-06 54.3 102 39.2
SGA_v2.0_scaffold4G02124 Striga asiatica HOM05D000913 ORTHO05D000687 5.1e-06 54.3 88 40.9
Cc02_g37590 Coffea canephora HOM05D000913 ORTHO05D000687 6.7e-06 53.9 79 40.5
Lsat_1_v5_gn_7_98820 Lactuca sativa HOM05D000913 ORTHO05D000687 6.7e-06 53.9 87 40.2
Oeu020046.1 Olea europaea HOM05D000913 ORTHO05D000687 6.7e-06 53.9 101 43.6
Oeu040052.1 Olea europaea HOM05D000913 ORTHO05D000687 6.7e-06 53.9 90 41.1
Solyc07g056200.3 Solanum lycopersicum HOM05D000913 ORTHO05D000687 6.7e-06 53.9 102 40.2
Atru.chr6.3444 Acer truncatum HOM05D000913 ORTHO05D000687 8.7e-06 53.5 60 48.3
Nn1g07704 Nelumbo nucifera HOM05D000913 ORTHO05D000687 8.7e-06 53.5 87 37.9
Nn7g37121 Nelumbo nucifera HOM05D000913 ORTHO05D000687 8.7e-06 53.5 103 35.9
Prupe.6G030200 Prunus persica HOM05D000913 ORTHO05D000687 8.7e-06 53.5 95 42.1
SalBow6G0242 Salvia bowleyana HOM05D000913 ORTHO05D000687 8.7e-06 53.5 96 37.5


User provided reference genes

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