Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G33715 Trifolium pratense HOM05D004487 ORTHO05D005483 5.1e-128 461.1 231 100.0
Ca_23004_v3 Cicer arietinum L. HOM05D004487 ORTHO05D005483 3.3e-95 352.1 239 77.0
Ca_25628_v3 Cicer arietinum L. HOM05D004487 ORTHO05D005483 2.7e-92 342.4 233 76.0
TPR.G36682 Trifolium pratense HOM05D005330 ORTHO05D006489 2.6e-87 325.9 225 76.9
Psat2g176760 Pisum sativum HOM05D004487 ORTHO05D005483 1.9e-82 309.7 231 71.0
Lj3g0008934 Lotus japonicus HOM05D004487 ORTHO05D005483 1.8e-80 303.1 242 68.2
Lalb_Chr11g0075201 Lupinus albus HOM05D004487 ORTHO05D005483 6.6e-75 284.6 241 66.0
Glyma.15G199500 Glycine max HOM05D004487 ORTHO05D005483 1.8e-72 276.6 233 65.7
Glyma.09G092600 Glycine max HOM05D004487 ORTHO05D005483 1.7e-67 260.0 234 63.2
Phvul.009G211400 Phaseolus vulgaris HOM05D004487 ORTHO05D005483 8.6e-67 257.7 235 60.4
arahy.Tifrunner.gnm1.ann1.0Q3DRY Arachis hypogaea HOM05D004487 ORTHO05D005483 2.3e-64 249.6 229 59.0
arahy.Tifrunner.gnm1.ann1.NRP8RH Arachis hypogaea HOM05D004487 ORTHO05D005483 8.9e-64 247.7 218 61.9
arahy.Tifrunner.gnm1.ann1.Z7G166 Arachis hypogaea HOM05D004487 ORTHO05D005483 3.4e-63 245.7 228 58.3
QL06p033465 Quercus lobata HOM05D004487 ORTHO05D005483 4.4e-63 245.4 235 57.9
arahy.Tifrunner.gnm1.ann1.10QJ8K Arachis hypogaea HOM05D004487 ORTHO05D005483 2.9e-62 242.7 216 61.1
arahy.Tifrunner.gnm1.ann1.S1NDRU Arachis hypogaea HOM05D004487 ORTHO05D005483 6.0e-60 235.0 229 56.8
arahy.Tifrunner.gnm1.ann1.7417N6 Arachis hypogaea HOM05D004487 ORTHO05D005483 7.8e-60 234.6 229 56.3
MD01G1016500 Malus domestica HOM05D004487 ORTHO05D005483 3.3e-58 229.2 243 55.1
GSVIVG01022203001 Vitis vinifera HOM05D004487 ORTHO05D005483 8.1e-57 224.6 218 55.5
VMungo1309G0247 Vigna mungo HOM05D004487 ORTHO05D005483 2.3e-56 223.0 235 54.0
arahy.Tifrunner.gnm1.ann1.Y72RXW Arachis hypogaea HOM05D004487 ORTHO05D005483 5.2e-56 221.9 226 54.0
Nn2g14563 Nelumbo nucifera HOM05D004487 ORTHO05D005483 6.8e-56 221.5 246 52.4
TAR625G1215 Trochodendron aralioides HOM05D004487 ORTHO05D005483 6.8e-56 221.5 222 53.6
MD15G1334800 Malus domestica HOM05D004487 ORTHO05D005483 1.5e-55 220.3 219 56.2
arahy.Tifrunner.gnm1.ann1.32WU9K Arachis hypogaea HOM05D004487 ORTHO05D005483 2.6e-55 219.5 207 58.9
CANSAT01G2370 Cannabis sativa HOM05D004487 ORTHO05D005483 2.6e-55 219.5 228 53.1
Nn8g40276 Nelumbo nucifera HOM05D004487 ORTHO05D005483 2.6e-55 219.5 246 51.2
CiPaw.04G093900 Carya illinoinensis HOM05D004487 ORTHO05D005483 4.4e-55 218.8 222 57.2
Haze_05964 Corylus avellana HOM05D004487 ORTHO05D005483 9.9e-55 217.6 273 48.4
Prupe.8G078400 Prunus persica HOM05D004487 ORTHO05D005483 1.3e-54 217.2 232 54.3
Psat4g139880 Pisum sativum HOM05D004487 ORTHO05D005483 2.2e-54 216.5 150 74.0
Psat4g139920 Pisum sativum HOM05D004487 ORTHO05D005483 2.2e-54 216.5 154 72.7
Ciclev10026392m.g Citrus clementina HOM05D004487 ORTHO05D005483 3.7e-54 215.7 236 52.1
Nitab4.5_0007717g0020 Nicotiana tabacum HOM05D004487 ORTHO05D005483 4.9e-54 215.3 237 51.5
TWI74G0090 Tripterygium wilfordii HOM05D004487 ORTHO05D005483 8.3e-54 214.5 206 57.3
Gorai.007G062000 Gossypium raimondii HOM05D004487 ORTHO05D005483 1.9e-53 213.4 203 57.6
vmacro18624 Vaccinium macrocarpon HOM05D004487 ORTHO05D005483 1.9e-53 213.4 232 52.2
Thecc.01G110300 Theobroma cacao HOM05D004487 ORTHO05D005483 2.4e-53 213.0 217 53.5
Gohir.A11G053300 Gossypium hirsutum HOM05D004487 ORTHO05D005483 4.1e-53 212.2 217 54.8
Manes.12G140400 Manihot esculenta HOM05D004487 ORTHO05D005483 7.1e-53 211.5 231 55.0
Potri.007G085100 Populus trichocarpa HOM05D004487 ORTHO05D005483 7.1e-53 211.5 236 52.5
CSS0025780 Camellia sinensis var. sinensis HOM05D004487 ORTHO05D005483 1.2e-52 210.7 240 51.2
vmacro21317 Vaccinium macrocarpon HOM05D004487 ORTHO05D005483 1.6e-52 210.3 212 54.2
Peaxi162Scf00171g00006 Petunia axillaris HOM05D004487 ORTHO05D005483 2.7e-52 209.5 242 48.8
Sopen03g029710 Solanum pennellii HOM05D004487 ORTHO05D005483 3.5e-52 209.1 232 50.9
Duzib147G1438 Durio zibethinus HOM05D004487 ORTHO05D005483 7.8e-52 208.0 205 53.7
Rhsim05G0180000 Rhododendron simsii HOM05D004487 ORTHO05D005483 1.0e-51 207.6 238 50.0
Migut.H01422 Erythranthe guttata HOM05D004487 ORTHO05D005483 1.3e-51 207.2 244 51.2
Gohir.D11G056800 Gossypium hirsutum HOM05D004487 ORTHO05D005483 2.3e-51 206.5 203 56.7
Lsat_1_v5_gn_2_120680 Lactuca sativa HOM05D004487 ORTHO05D005483 2.3e-51 206.5 213 52.6
Nitab4.5_0001495g0020 Nicotiana tabacum HOM05D004487 ORTHO05D005483 2.3e-51 206.5 237 50.6
Atru.chr3.204 Acer truncatum HOM05D004487 ORTHO05D005483 3.0e-51 206.1 234 50.0
HanXRQChr14g0458831 Helianthus annuus HOM05D004487 ORTHO05D005483 5.1e-51 205.3 214 54.7
PGSC0003DMG400015213 Solanum tuberosum HOM05D004487 ORTHO05D005483 6.6e-51 204.9 232 50.4
COL.COLO4_11036 Corchorus olitorius HOM05D004487 ORTHO05D005483 1.1e-50 204.1 202 54.5
FvH4_1g21950 Fragaria vesca HOM05D004487 ORTHO05D005483 1.1e-50 204.1 235 50.2
Solyc03g019910.3 Solanum lycopersicum HOM05D004487 ORTHO05D005483 1.1e-50 204.1 232 50.9
CAN.G861.28 Capsicum annuum HOM05D004487 ORTHO05D005483 4.3e-50 202.2 229 50.7
MELO3C007790.2 Cucumis melo HOM05D004487 ORTHO05D005483 4.3e-50 202.2 235 49.8
CsaV3_6G045820 Cucumis sativus L. HOM05D004487 ORTHO05D005483 4.3e-50 202.2 235 49.8
RcHm_v2.0_Chr2g0115971 Rosa chinensis HOM05D004487 ORTHO05D005483 1.6e-49 200.3 235 48.5
Oeu040918.3 Olea europaea HOM05D004487 ORTHO05D005483 4.7e-49 198.7 282 43.6
MSTRG.14740 Avicennia marina HOM05D004487 ORTHO05D005483 1.1e-48 197.6 230 49.1
ECA238G1615 Erigeron canadensis HOM05D004487 ORTHO05D005483 1.1e-48 197.6 201 54.2
Prupe.6G176600 Prunus persica HOM05D004487 ORTHO05D005483 1.1e-48 197.6 243 50.6
AUR62005250 Chenopodium quinoa HOM05D004487 ORTHO05D005483 1.8e-48 196.8 205 51.7
Sabra07G0070400 Salix brachista HOM05D004487 ORTHO05D005483 2.4e-48 196.4 236 49.2
FAN19G1427 Fragaria x ananassa HOM05D004487 ORTHO05D005483 5.2e-48 195.3 230 48.7
FAN23G0375 Fragaria x ananassa HOM05D004487 ORTHO05D005483 5.2e-48 195.3 230 48.7
arahy.Tifrunner.gnm1.ann1.L7ETT7 Arachis hypogaea HOM05D004487 ORTHO05D005483 1.2e-47 194.1 174 59.2
AUR62000713 Chenopodium quinoa HOM05D004487 ORTHO05D005483 1.2e-47 194.1 205 52.2
FAN28G1272 Fragaria x ananassa HOM05D004487 ORTHO05D005483 1.2e-47 194.1 222 48.6
FAN28G1914 Fragaria x ananassa HOM05D004487 ORTHO05D005483 1.2e-47 194.1 222 48.6
FvH4_1g25670 Fragaria vesca HOM05D004487 ORTHO05D005483 2.6e-47 193.0 232 48.7
Gohir.1Z049552 Gossypium hirsutum HOM05D004487 ORTHO05D005483 2.6e-47 193.0 185 57.3
arahy.Tifrunner.gnm1.ann1.9RVJ5A Arachis hypogaea HOM05D004487 ORTHO05D005483 7.6e-47 191.4 202 54.0
Cc02_g15410 Coffea canephora HOM05D004487 ORTHO05D005483 9.9e-47 191.0 227 49.8
FAN26G2580 Fragaria x ananassa HOM05D004487 ORTHO05D005483 9.9e-47 191.0 230 47.8
PGR004G1100 Punica granatum HOM05D004487 ORTHO05D005483 1.3e-46 190.7 247 44.9
Hma1.2p1_0486F.1_g163280 Hydrangea macrophylla HOM05D004487 ORTHO05D005483 1.7e-46 190.3 244 46.7
EL10Ac4g09863 Beta vulgaris HOM05D004487 ORTHO05D005483 4.9e-46 188.7 201 48.3
Aa31LG6G15640 Aethionema arabicum HOM05D004487 ORTHO05D005483 6.4e-46 188.3 242 47.9
ClCG01G019130 Citrullus lanatus HOM05D004487 ORTHO05D005483 6.4e-46 188.3 229 47.6
CsaV3_5G036000 Cucumis sativus L. HOM05D004487 ORTHO05D005483 6.4e-46 188.3 243 46.9
arahy.Tifrunner.gnm1.ann1.I45DC0 Arachis hypogaea HOM05D004487 ORTHO05D005483 5.4e-45 185.3 229 46.3
Nitab4.5_0000477g0120 Nicotiana tabacum HOM05D004487 ORTHO05D005483 5.4e-45 185.3 239 48.5
FAN19G3081 Fragaria x ananassa HOM05D004487 ORTHO05D005483 7.1e-45 184.9 227 47.6
Eucgr.I00528 Eucalyptus grandis HOM05D004487 ORTHO05D005483 2.1e-44 183.3 246 44.3
Lj2A942G27 Lonicera japonica HOM05D004487 ORTHO05D005483 3.5e-44 182.6 198 54.0
TAR626G1474 Trochodendron aralioides HOM05D004487 ORTHO05D005483 6.0e-44 181.8 220 46.8
MELO3C012399.2 Cucumis melo HOM05D004487 ORTHO05D005483 7.8e-44 181.4 259 43.6
DCAR_014253 Daucus carota HOM05D004487 ORTHO05D005483 8.7e-43 177.9 218 45.4
Aqoxy2G03854 Aquilegia oxysepala HOM05D004487 ORTHO05D005483 7.3e-42 174.9 203 51.7
MBI04_g31212_MAGBIO Magnolia biondii HOM05D004487 ORTHO05D005483 7.3e-42 174.9 214 47.7
Carub.0007s0150 Capsella rubella HOM05D004487 ORTHO05D005483 1.2e-41 174.1 237 44.7
Actinidia08329 Actinidia chinensis HOM05D004487 ORTHO05D005483 1.6e-41 173.7 157 58.6
Ah.04g161200 Amaranthus hybridus HOM05D004487 ORTHO05D005483 1.4e-40 170.6 200 47.5
Sp7g04740 Schrenkiella parvula HOM05D004487 ORTHO05D005483 3.1e-40 169.5 236 45.3
AL7G11780 Arabidopsis lyrata HOM05D004487 ORTHO05D005483 9.0e-40 167.9 237 43.5
Thhalv10027902m.g Eutrema salsugineum HOM05D004487 ORTHO05D005483 2.0e-39 166.8 244 43.9
Lj6g0018564 Lotus japonicus HOM05D004487 ORTHO05D005483 2.6e-39 166.4 111 77.5
ClCG05G021300 Citrullus lanatus HOM05D004487 ORTHO05D005483 3.4e-39 166.0 239 44.8
Potri.005G082500 Populus trichocarpa HOM05D004487 ORTHO05D005483 2.2e-38 163.3 237 43.9
SGA_v2.0_scaffold106G30591 Striga asiatica HOM05D004487 ORTHO05D005483 3.8e-38 162.5 232 45.7
unitig_22.g6757 Utricularia gibba HOM05D004487 ORTHO05D005483 1.1e-37 161.0 198 48.0
C04p44290 Brassica napus HOM05D004487 ORTHO05D005483 7.1e-37 158.3 232 44.4
Hma1.2p1_0375F.1_g138570 Hydrangea macrophylla HOM05D004487 ORTHO05D005483 1.2e-36 157.5 119 65.5
BcaC02g09572 Brassica carinata HOM05D004487 ORTHO05D005483 1.6e-36 157.1 233 44.2
THA.LOC104807718 Tarenaya hassleriana HOM05D004487 ORTHO05D005483 1.6e-36 157.1 214 45.3
Actinidia33369 Actinidia chinensis HOM05D004487 ORTHO05D005483 1.3e-35 154.1 171 50.3
arahy.Tifrunner.gnm1.ann1.4M30AQ Arachis hypogaea HOM05D004487 ORTHO05D005483 1.3e-35 154.1 173 50.9
BolC4t26003H Brassica oleracea HOM05D004487 ORTHO05D005483 1.3e-35 154.1 243 42.4
Nitab4.5_0007222g0010 Nicotiana tabacum HOM05D004487 ORTHO05D005483 1.3e-35 154.1 238 45.0
Sc16g0008840 Simmondsia chinensis HOM05D004487 ORTHO05D005483 1.1e-34 151.0 201 42.8
AT4G39630 Arabidopsis thaliana HOM05D004487 ORTHO05D005483 1.5e-34 150.6 237 40.1
CARHR215520 Cardamine hirsuta HOM05D004487 ORTHO05D005483 1.9e-34 150.2 240 40.4
A04p10610 Brassica napus HOM05D004487 ORTHO05D005483 2.5e-34 149.8 230 43.5
arahy.Tifrunner.gnm1.ann1.ZIF87W Arachis hypogaea HOM05D004487 ORTHO05D005483 1.3e-33 147.5 191 49.2
BraA04t16724Z Brassica rapa HOM05D004487 ORTHO05D005483 1.3e-33 147.5 231 42.9
HanXRQChr07g0202331 Helianthus annuus HOM05D004487 ORTHO05D005483 1.4e-32 144.1 163 50.3
Lj2A929T16 Lonicera japonica HOM05D004487 ORTHO05D005483 1.4e-32 144.1 228 41.2
Sabra05G0067500 Salix brachista HOM05D004487 ORTHO05D005483 3.1e-32 142.9 233 40.3
Lj4A903G12 Lonicera japonica HOM05D004487 ORTHO05D005483 5.8e-31 138.7 185 48.6
BcaB06g27071 Brassica carinata HOM05D004487 ORTHO05D005483 9.9e-31 137.9 233 40.8
Os08g0290400 Oryza sativa ssp. japonica HOM05D004487 ORTHO05D005483 1.3e-30 137.5 198 43.4
CDE04G3174 Ceratophyllum demersum HOM05D004487 ORTHO05D005483 6.0e-28 128.6 220 38.6
Zm00001eb192330 Zea mays HOM05D004487 ORTHO05D005483 1.3e-27 127.5 231 37.2
TWI53G0384 Tripterygium wilfordii HOM05D004487 ORTHO05D005483 5.1e-27 125.6 83 71.1
CARHR247100 Cardamine hirsuta HOM05D004487 ORTHO05D005483 1.5e-26 124.0 241 38.2
ATR0210G008 Amborella trichopoda HOM05D004487 ORTHO05D005483 4.3e-26 122.5 245 34.7
CSS0002847 Camellia sinensis var. sinensis HOM05D004487 ORTHO05D005483 4.3e-26 122.5 98 68.4
Dinv05687 Davidia involucrata HOM05D004487 ORTHO05D005483 2.8e-25 119.8 190 41.6
Dinv13358 Davidia involucrata HOM05D004487 ORTHO05D005483 4.8e-25 119.0 147 47.6
HPP92_005242 Vanilla planifolia HOM05D004487 ORTHO05D005483 4.8e-25 119.0 200 36.5
SHI54251 Sapria himalayana HOM05D004487 ORTHO05D005483 1.3e-22 110.9 244 36.1
Sp7g36260 Schrenkiella parvula HOM05D004487 ORTHO05D005483 2.2e-22 110.2 229 37.6
CDE04G3300 Ceratophyllum demersum HOM05D004487 ORTHO05D005483 1.1e-21 107.8 170 40.6
arahy.Tifrunner.gnm1.ann1.02EUR6 Arachis hypogaea HOM05D004487 ORTHO05D005483 1.6e-20 104.0 119 49.6
SEGI_02201 Sequoiadendron giganteum HOM05D004487 ORTHO05D005483 3.5e-20 102.8 210 33.3
arahy.Tifrunner.gnm1.ann1.PFH739 Arachis hypogaea HOM05D004487 ORTHO05D005483 2.1e-17 93.6 94 53.2
arahy.Tifrunner.gnm1.ann1.PL6VNF Arachis hypogaea HOM05D004487 ORTHO05D005483 8.2e-17 91.7 94 53.2
arahy.Tifrunner.gnm1.ann1.3C43J1 Arachis hypogaea HOM05D004487 ORTHO05D005483 2.4e-16 90.1 111 45.0
arahy.Tifrunner.gnm1.ann1.RJV3W7 Arachis hypogaea HOM05D004487 ORTHO05D005483 2.6e-15 86.7 111 44.1
Sed0026038 Sechium edule HOM05D004487 ORTHO05D005483 5.8e-15 85.5 142 40.1
Lalb_Chr12g0203581 Lupinus albus HOM05D004487 ORTHO05D005483 1.4e-13 80.9 226 31.4
CDE06G2627 Ceratophyllum demersum HOM05D004487 ORTHO05D005483 9.3e-13 78.2 177 32.2
arahy.Tifrunner.gnm1.ann1.94164M Arachis hypogaea HOM05D004487 ORTHO05D005483 4.6e-12 75.9 88 45.5
arahy.Tifrunner.gnm1.ann1.FJ4QJG Arachis hypogaea HOM05D004487 ORTHO05D005483 1.3e-11 74.3 88 44.3
arahy.Tifrunner.gnm1.ann1.E9WDF1 Arachis hypogaea HOM05D004487 ORTHO05D005483 1.9e-10 70.5 103 48.5
SGA_v2.0_scaffold83G26423 Striga asiatica HOM05D004487 ORTHO05D005483 5.7e-10 68.9 57 57.9
CSS0022213 Camellia sinensis var. sinensis HOM05D004487 ORTHO05D005483 7.4e-10 68.6 50 74.0
Oeu043116.1 Olea europaea HOM05D004487 ORTHO05D005483 7.4e-10 68.6 155 32.3
CSS0015836 Camellia sinensis var. sinensis HOM05D004487 ORTHO05D005483 9.7e-10 68.2 39 87.2
arahy.Tifrunner.gnm1.ann1.X4R883 Arachis hypogaea HOM05D004487 ORTHO05D005483 4.5e-07 59.3 58 48.3


User provided reference genes

Program Settings