Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G3371 Trifolium pratense HOM05D004942 ORTHO05D005687 0.0e+00 2337.4 1192 100.0
Medtr8g066290 Medicago truncatula HOM05D004942 ORTHO05D005687 0.0e+00 1749.6 1172 78.4
Psat4g122040 Pisum sativum HOM05D004942 ORTHO05D005687 0.0e+00 1491.5 1133 71.8
Psat1g014920 Pisum sativum HOM05D004942 ORTHO05D005687 0.0e+00 1350.1 1183 63.6
Glyma.16G091700 Glycine max HOM05D004942 ORTHO05D005687 0.0e+00 1255.0 1121 62.4
Lj4g0014066 Lotus japonicus HOM05D004942 ORTHO05D005687 0.0e+00 1250.0 1123 62.1
Lalb_Chr09g0334721 Lupinus albus HOM05D004942 ORTHO05D005687 0.0e+00 1236.9 1228 57.3
Ca_22664_v3 Cicer arietinum L. HOM05D004942 ORTHO05D005687 0.0e+00 1220.3 936 70.5
Phvul.003G282800 Phaseolus vulgaris HOM05D004942 ORTHO05D005687 0.0e+00 1182.5 1189 56.8
TPR.G31932 Trifolium pratense HOM05D004942 ORTHO05D005687 0.0e+00 1115.9 749 79.2
VMungo0251G2230 Vigna mungo HOM05D004942 ORTHO05D005687 0.0e+00 1115.9 1146 55.8
TPR.G31934 Trifolium pratense HOM05D004942 ORTHO05D005687 3.3e-194 683.3 381 94.0
Cfa008858 Carpinus fangiana HOM05D004942 ORTHO05D005687 2.9e-190 670.2 1242 37.8
Haze_11879 Corylus avellana HOM05D004942 ORTHO05D005687 4.1e-189 666.4 1268 37.4
QL03p073561 Quercus lobata HOM05D004942 ORTHO05D005687 1.0e-187 661.8 1254 39.2
Duzib251G0048 Durio zibethinus HOM05D004942 ORTHO05D005687 1.4e-173 614.8 1237 35.9
Gorai.008G175800 Gossypium raimondii HOM05D004942 ORTHO05D005687 1.0e-171 608.6 1224 36.4
Thecc.02G326800 Theobroma cacao HOM05D004942 ORTHO05D005687 1.7e-171 607.8 1240 36.0
Prupe.1G290000 Prunus persica HOM05D004942 ORTHO05D005687 6.4e-166 589.3 1232 36.0
CiPaw.06G093500 Carya illinoinensis HOM05D004942 ORTHO05D005687 9.3e-165 585.5 1227 36.2
Potri.008G097700 Populus trichocarpa HOM05D004942 ORTHO05D005687 2.3e-163 580.9 1261 34.0
Ciclev10033741m.g Citrus clementina HOM05D004942 ORTHO05D005687 1.5e-162 578.2 1201 36.6
GSVIVG01012245001 Vitis vinifera HOM05D004942 ORTHO05D005687 2.1e-161 574.3 1162 36.9
Manes.01G026200 Manihot esculenta HOM05D004942 ORTHO05D005687 2.2e-158 564.3 1228 33.8
MD16G1059100 Malus domestica HOM05D004942 ORTHO05D005687 5.1e-147 526.6 1354 32.3
Cpa.g.sc1669.1 Carica papaya HOM05D004942 ORTHO05D005687 1.9e-146 524.6 1184 35.5
RcHm_v2.0_Chr4g0437911 Rosa chinensis HOM05D004942 ORTHO05D005687 2.5e-146 524.2 1269 33.4
CANSAT64G2200 Cannabis sativa HOM05D004942 ORTHO05D005687 3.0e-139 500.7 1211 32.9
Hma1.2p1_2519F.1_g323790 Hydrangea macrophylla HOM05D004942 ORTHO05D005687 4.5e-135 486.9 1175 32.8
THA.LOC104822000 Tarenaya hassleriana HOM05D004942 ORTHO05D005687 8.5e-134 482.6 1158 33.8
TWI79G0892 Tripterygium wilfordii HOM05D004942 ORTHO05D005687 1.0e-131 475.7 1183 31.7
Gohir.A12G159900 Gossypium hirsutum HOM05D004942 ORTHO05D005687 2.3e-131 474.6 903 37.1
Sabra08G0073900 Salix brachista HOM05D004942 ORTHO05D005687 2.3e-131 474.6 1283 31.6
FAN22G2425 Fragaria x ananassa HOM05D004942 ORTHO05D005687 5.7e-130 469.9 1243 33.0
FvH4_4g29660 Fragaria vesca HOM05D004942 ORTHO05D005687 7.4e-130 469.5 1239 32.7
FAN07G2875 Fragaria x ananassa HOM05D004942 ORTHO05D005687 2.8e-129 467.6 1268 31.9
Nn3g17507 Nelumbo nucifera HOM05D004942 ORTHO05D005687 1.4e-128 465.3 1388 29.9
Aqoxy3G00534 Aquilegia oxysepala HOM05D004942 ORTHO05D005687 1.7e-126 458.4 1273 31.3
Cc11_g11760 Coffea canephora HOM05D004942 ORTHO05D005687 3.8e-126 457.2 1172 32.2
FAN12G1725 Fragaria x ananassa HOM05D004942 ORTHO05D005687 5.5e-125 453.4 1269 31.8
Sc04g0007460 Simmondsia chinensis HOM05D004942 ORTHO05D005687 5.5e-125 453.4 1248 31.7
Rhsim09G0125700 Rhododendron simsii HOM05D004942 ORTHO05D005687 2.7e-124 451.1 1314 30.7
Sed0022979 Sechium edule HOM05D004942 ORTHO05D005687 2.0e-122 444.9 1278 30.0
Aqoxy4G01534 Aquilegia oxysepala HOM05D004942 ORTHO05D005687 4.4e-122 443.7 1284 30.7
CARHR025590 Cardamine hirsuta HOM05D004942 ORTHO05D005687 3.7e-121 440.7 1191 30.5
Gohir.D12G163200 Gossypium hirsutum HOM05D004942 ORTHO05D005687 1.2e-119 435.6 921 35.6
AUR62007894 Chenopodium quinoa HOM05D004942 ORTHO05D005687 3.5e-119 434.1 1339 28.8
MELO3C012244.2 Cucumis melo HOM05D004942 ORTHO05D005687 1.0e-118 432.6 1225 30.4
ClCG05G022730 Citrullus lanatus HOM05D004942 ORTHO05D005687 8.5e-118 429.5 1215 30.9
Thhalv10006590m.g Eutrema salsugineum HOM05D004942 ORTHO05D005687 3.6e-116 424.1 1216 29.4
COL.COLO4_27850 Corchorus olitorius HOM05D004942 ORTHO05D005687 1.4e-115 422.2 1145 30.7
Oeu020362.1 Olea europaea HOM05D004942 ORTHO05D005687 3.0e-115 421.0 1174 31.0
PSO017G2640 Papaver somniferum HOM05D004942 ORTHO05D005687 5.2e-115 420.2 1309 30.3
PGR031G3471 Punica granatum HOM05D004942 ORTHO05D005687 1.5e-114 418.7 1215 30.0
Hund25161 Selenicereus undatus HOM05D004942 ORTHO05D005687 1.5e-114 418.7 1216 30.3
AL1G39420 Arabidopsis lyrata HOM05D004942 ORTHO05D005687 2.0e-114 418.3 1203 29.8
EL10Ac6g15023 Beta vulgaris HOM05D004942 ORTHO05D005687 7.5e-114 416.4 1249 30.4
PSO478G0521 Papaver somniferum HOM05D004942 ORTHO05D005687 1.7e-113 415.2 1306 29.7
AT1G26330 Arabidopsis thaliana HOM05D004942 ORTHO05D005687 4.8e-113 413.7 1181 29.4
Peaxi162Scf00175g00531 Petunia axillaris HOM05D004942 ORTHO05D005687 1.7e-110 405.2 1149 30.9
Hma1.2p1_0566F.1_g179990 Hydrangea macrophylla HOM05D004942 ORTHO05D005687 1.9e-109 401.7 1146 30.5
Migut.L01173 Erythranthe guttata HOM05D004942 ORTHO05D005687 2.5e-109 401.4 1141 30.3
Sp1g22360 Schrenkiella parvula HOM05D004942 ORTHO05D005687 4.2e-109 400.6 1206 30.3
HanXRQChr17g0568411 Helianthus annuus HOM05D004942 ORTHO05D005687 2.1e-108 398.3 1150 30.3
ECA234G0983 Erigeron canadensis HOM05D004942 ORTHO05D005687 3.6e-108 397.5 1203 28.7
BcaC05g26635 Brassica carinata HOM05D004942 ORTHO05D005687 1.0e-107 396.0 1249 29.7
A09p39800 Brassica napus HOM05D004942 ORTHO05D005687 6.8e-107 393.3 1249 28.4
AUR62003077 Chenopodium quinoa HOM05D004942 ORTHO05D005687 8.8e-107 392.9 1425 27.2
BraA09t39480Z Brassica rapa HOM05D004942 ORTHO05D005687 3.4e-106 391.0 1249 28.1
BcaC05g26421 Brassica carinata HOM05D004942 ORTHO05D005687 9.8e-106 389.4 1248 29.2
C05p24600 Brassica napus HOM05D004942 ORTHO05D005687 1.7e-105 388.7 1252 29.3
BolC5t31196H Brassica oleracea HOM05D004942 ORTHO05D005687 1.7e-105 388.7 1252 29.3
Carub.0001s2467 Capsella rubella HOM05D004942 ORTHO05D005687 2.2e-105 388.3 1206 28.9
MBI16_g37883_MAGBIO Magnolia biondii HOM05D004942 ORTHO05D005687 1.3e-102 379.0 1539 27.5
Ah.03g138750 Amaranthus hybridus HOM05D004942 ORTHO05D005687 1.2e-100 372.5 1240 29.5
SGA_v2.0_scaffold16G07813 Striga asiatica HOM05D004942 ORTHO05D005687 1.4e-99 369.0 1158 28.1
Solyc05g012060.4 Solanum lycopersicum HOM05D004942 ORTHO05D005687 2.4e-96 358.2 1111 29.3
SalBow2G1731 Salvia bowleyana HOM05D004942 ORTHO05D005687 9.2e-96 356.3 1213 28.8
Lj3A1029T37 Lonicera japonica HOM05D004942 ORTHO05D005687 1.6e-95 355.5 1253 28.0
Nitab4.5_0000027g0020 Nicotiana tabacum HOM05D004942 ORTHO05D005687 3.5e-95 354.4 1152 29.3
Sopen05g006850 Solanum pennellii HOM05D004942 ORTHO05D005687 2.9e-94 351.3 1107 29.3
ATR0827G101 Amborella trichopoda HOM05D004942 ORTHO05D005687 1.9e-93 348.6 1492 26.4
vmacro10440 Vaccinium macrocarpon HOM05D004942 ORTHO05D005687 3.6e-92 344.4 517 39.7
Nitab4.5_0003545g0010 Nicotiana tabacum HOM05D004942 ORTHO05D005687 1.9e-88 332.0 1194 28.2
Dinv34045 Davidia involucrata HOM05D004942 ORTHO05D005687 8.6e-86 323.2 833 33.1
CsaV3_5G034290 Cucumis sativus L. HOM05D004942 ORTHO05D005687 2.4e-80 305.1 979 29.7
Aa31LG7G8720 Aethionema arabicum HOM05D004942 ORTHO05D005687 2.1e-79 302.0 1144 27.3
Os09g0101800 Oryza sativa ssp. japonica HOM05D004942 ORTHO05D005687 2.5e-77 295.0 1193 25.8
Migut.A01205 Erythranthe guttata HOM05D004942 ORTHO05D005687 1.2e-76 292.7 526 34.8
Migut.A01186 Erythranthe guttata HOM05D004942 ORTHO05D005687 1.8e-75 288.9 523 33.7
TAR629G1003 Trochodendron aralioides HOM05D004942 ORTHO05D005687 1.8e-75 288.9 284 51.1
CSS0007829 Camellia sinensis var. sinensis HOM05D004942 ORTHO05D005687 8.9e-75 286.6 917 29.8
CSS0011617 Camellia sinensis var. sinensis HOM05D004942 ORTHO05D005687 4.4e-74 284.3 917 29.7
MBI16_g47660_MAGBIO Magnolia biondii HOM05D004942 ORTHO05D005687 4.4e-74 284.3 342 45.3
CAN.G707.24 Capsicum annuum HOM05D004942 ORTHO05D005687 7.1e-72 276.9 1028 28.0
Lsat_1_v5_gn_4_11720 Lactuca sativa HOM05D004942 ORTHO05D005687 1.6e-71 275.8 1144 26.0
HPP92_000888 Vanilla planifolia HOM05D004942 ORTHO05D005687 2.1e-68 265.4 1303 25.0
Zm00001eb095700 Zea mays HOM05D004942 ORTHO05D005687 1.5e-66 259.2 421 35.2
Atru.chr11.1596 Acer truncatum HOM05D004942 ORTHO05D005687 3.4e-66 258.1 263 49.8
DCAR_023750 Daucus carota HOM05D004942 ORTHO05D005687 1.4e-64 252.7 1171 25.4
Actinidia28654 Actinidia chinensis HOM05D004942 ORTHO05D005687 5.8e-58 230.7 415 35.4
Atru.chr11.1595 Acer truncatum HOM05D004942 ORTHO05D005687 1.0e-54 219.9 500 33.8
TPR.G8934 Trifolium pratense HOM05D004942 ORTHO05D005687 1.6e-47 196.1 108 88.0
CDE11G1026 Ceratophyllum demersum HOM05D004942 ORTHO05D005687 6.0e-47 194.1 486 27.6
unitig_26.g10284 Utricularia gibba HOM05D004942 ORTHO05D005687 1.3e-41 176.4 1161 23.2
vmacro10441 Vaccinium macrocarpon HOM05D004942 ORTHO05D005687 1.2e-39 169.9 446 33.0
SHI10798 Sapria himalayana HOM05D004942 ORTHO05D005687 1.8e-38 166.0 313 36.4
TAR629G1720 Trochodendron aralioides HOM05D004942 ORTHO05D005687 1.5e-26 126.3 303 32.7
Gohir.A12G159850 Gossypium hirsutum HOM05D004942 ORTHO05D005687 5.9e-26 124.4 240 37.5
Mapoly0001s0391 Marchantia polymorpha HOM05D004942 ORTHO05D005687 1.3e-25 123.2 567 23.8
Actinidia28653 Actinidia chinensis HOM05D004942 ORTHO05D005687 6.5e-25 120.9 131 48.1
Actinidia27212 Actinidia chinensis HOM05D004942 ORTHO05D005687 1.1e-24 120.2 131 48.1
SMO269G0037 Selaginella moellendorffii HOM05D004942 ORTHO05D005687 1.1e-24 120.2 381 23.1
GSVIVG01026037001 Vitis vinifera HOM05D004942 ORTHO05D005687 1.4e-22 113.2 147 43.5
TPR.G36333 Trifolium pratense HOM05D004942 ORTHO05D005687 4.3e-21 108.2 65 86.2
CSS0004641 Camellia sinensis var. sinensis HOM05D004942 ORTHO05D005687 2.7e-15 89.0 194 34.5
GSVIVG01015130001 Vitis vinifera HOM05D004942 ORTHO05D005687 5.1e-14 84.7 57 64.9
Aqoxy4G01498 Aquilegia oxysepala HOM05D004942 ORTHO05D005687 1.5e-13 83.2 88 46.6
GSVIVG01037061001 Vitis vinifera HOM05D004942 ORTHO05D005687 1.7e-12 79.7 57 61.4
GSVIVG01026043001 Vitis vinifera HOM05D004942 ORTHO05D005687 3.7e-12 78.6 59 57.6
CSS0006420 Camellia sinensis var. sinensis HOM05D004942 ORTHO05D005687 2.0e-10 72.8 54 61.1
CSS0033973 Camellia sinensis var. sinensis HOM05D004942 ORTHO05D005687 2.0e-10 72.8 54 61.1
Gorai.012G127400 Gossypium raimondii HOM05D004942 ORTHO05D005687 1.1e-08 67.0 48 62.5
Gohir.D12G163150 Gossypium hirsutum HOM05D004942 ORTHO05D005687 1.4e-08 66.6 48 58.3
MSTRG.7735 Avicennia marina HOM05D004942 ORTHO05D005687 4.2e-08 65.1 73 45.2
TAR629G0168 Trochodendron aralioides HOM05D004942 ORTHO05D005687 4.2e-08 65.1 174 33.9
Eucgr.G02429 Eucalyptus grandis HOM05D004942 ORTHO05D005687 5.5e-08 64.7 68 45.6
MBI16_g47661_MAGBIO Magnolia biondii HOM05D004942 ORTHO05D005687 3.6e-07 62.0 49 51.0
SHI10796 Sapria himalayana HOM05D004942 ORTHO05D005687 3.6e-07 62.0 125 30.4
SEGI_38362 Sequoiadendron giganteum HOM05D004942 ORTHO05D005687 2.3e-06 59.3 130 29.2
Oeu028721.1 Olea europaea HOM05D004942 ORTHO05D005687 5.2e-06 58.2 103 36.9
SEGI_21482 Sequoiadendron giganteum HOM05D004942 ORTHO05D005687 8.8e-06 57.4 76 39.5


User provided reference genes

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