Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G33669 Trifolium pratense HOM05D001750 ORTHO05D001825 2.4e-84 315.5 160 100.0
FvH4_c3g00021 Fragaria vesca HOM05D001750 ORTHO05D001825 7.9e-27 124.4 64 96.9
Ciclev10013979m.g Citrus clementina HOM05D001750 ORTHO05D001825 3.9e-26 122.1 64 95.3
Ciclev10013982m.g Citrus clementina HOM05D001750 ORTHO05D001825 3.9e-26 122.1 64 95.3
Ciclev10013998m.g Citrus clementina HOM05D001750 ORTHO05D001825 3.9e-26 122.1 64 95.3
Ciclev10014001m.g Citrus clementina HOM05D001750 ORTHO05D001825 3.9e-26 122.1 64 95.3
Ciclev10018421m.g Citrus clementina HOM05D001750 ORTHO05D001825 3.9e-26 122.1 64 95.3
Ciclev10030453m.g Citrus clementina HOM05D001750 ORTHO05D001825 3.9e-26 122.1 64 95.3
Medtr4g051300 Medicago truncatula HOM05D001750 ORTHO05D001825 3.9e-26 122.1 65 93.8
Medtr7g021740 Medicago truncatula HOM05D001750 ORTHO05D001825 3.9e-26 122.1 65 93.8
Psat0s6638g0080 Pisum sativum HOM05D001750 ORTHO05D001825 3.9e-26 122.1 65 93.8
Psat0s8829g0080 Pisum sativum HOM05D001750 ORTHO05D001825 3.9e-26 122.1 65 93.8
Psat0ss8367g0120 Pisum sativum HOM05D001750 ORTHO05D001825 3.9e-26 122.1 65 93.8
Psat4g065280 Pisum sativum HOM05D001750 ORTHO05D001825 3.9e-26 122.1 65 93.8
PGR111G0046 Punica granatum HOM05D001750 ORTHO05D001825 3.9e-26 122.1 64 93.8
ATCG01010 Arabidopsis thaliana HOM05D001750 ORTHO05D001825 1.1e-25 120.6 64 92.2
BolSC37t60789H Brassica oleracea HOM05D001750 ORTHO05D001825 1.1e-25 120.6 64 92.2
BolSC44t60818H Brassica oleracea HOM05D001750 ORTHO05D001825 1.1e-25 120.6 64 92.2
BolSC45t60914H Brassica oleracea HOM05D001750 ORTHO05D001825 1.1e-25 120.6 64 92.2
BolSC46t60963H Brassica oleracea HOM05D001750 ORTHO05D001825 1.1e-25 120.6 64 92.2
BraSC103t45424Z Brassica rapa HOM05D001750 ORTHO05D001825 1.1e-25 120.6 64 92.2
BraSC143t45665Z Brassica rapa HOM05D001750 ORTHO05D001825 1.1e-25 120.6 64 92.2
BraSC25t45905Z Brassica rapa HOM05D001750 ORTHO05D001825 1.1e-25 120.6 64 92.2
BraSC59t46546Z Brassica rapa HOM05D001750 ORTHO05D001825 1.1e-25 120.6 64 92.2
Ciclev10013988m.g Citrus clementina HOM05D001750 ORTHO05D001825 1.1e-25 120.6 64 93.8
Gohir.A04G039195 Gossypium hirsutum HOM05D001750 ORTHO05D001825 2.5e-25 119.4 68 88.2
Gohir.A07G167090 Gossypium hirsutum HOM05D001750 ORTHO05D001825 2.5e-25 119.4 68 88.2
Gohir.A12G229700 Gossypium hirsutum HOM05D001750 ORTHO05D001825 2.5e-25 119.4 68 88.2
Psat5g142840 Pisum sativum HOM05D001750 ORTHO05D001825 2.5e-25 119.4 65 92.3
AL7G50360 Arabidopsis lyrata HOM05D001750 ORTHO05D001825 3.3e-25 119.0 64 90.6
Lalb_Chr03g0039401 Lupinus albus HOM05D001750 ORTHO05D001825 3.3e-25 119.0 65 90.8
Medtr0002s0200 Medicago truncatula HOM05D001750 ORTHO05D001825 3.3e-25 119.0 64 90.6
BraSC138t45539Z Brassica rapa HOM05D001750 ORTHO05D001825 4.3e-25 118.6 70 84.3
SalBow1G5472 Salvia bowleyana HOM05D001750 ORTHO05D001825 4.3e-25 118.6 64 89.1
Gohir.1Z049402 Gossypium hirsutum HOM05D001750 ORTHO05D001825 5.6e-25 118.2 68 86.8
Nn064s42216 Nelumbo nucifera HOM05D001750 ORTHO05D001825 5.6e-25 118.2 64 92.2
Nn1g09725 Nelumbo nucifera HOM05D001750 ORTHO05D001825 5.6e-25 118.2 64 92.2
Nn212s45208 Nelumbo nucifera HOM05D001750 ORTHO05D001825 5.6e-25 118.2 64 92.2
Potri.001G342933 Populus trichocarpa HOM05D001750 ORTHO05D001825 5.6e-25 118.2 64 92.2
Sed0000095 Sechium edule HOM05D001750 ORTHO05D001825 7.4e-25 117.9 64 90.6
EL10As28g24255 Beta vulgaris HOM05D001750 ORTHO05D001825 9.6e-25 117.5 64 90.6
Gohir.A02G134105 Gossypium hirsutum HOM05D001750 ORTHO05D001825 1.3e-24 117.1 68 86.8
LjContig00318g0010147 Lotus japonicus HOM05D001750 ORTHO05D001825 1.3e-24 117.1 64 90.6
LjContig00319g0009462 Lotus japonicus HOM05D001750 ORTHO05D001825 1.3e-24 117.1 64 90.6
Oeu058634.1 Olea europaea HOM05D001750 ORTHO05D001825 2.1e-24 116.3 64 89.1
CAN.G134.7 Capsicum annuum HOM05D001750 ORTHO05D001825 2.8e-24 115.9 64 90.6
CAN.G1431.3 Capsicum annuum HOM05D001750 ORTHO05D001825 2.8e-24 115.9 64 90.6
CAN.G1526.5 Capsicum annuum HOM05D001750 ORTHO05D001825 2.8e-24 115.9 64 90.6
CAN.G413.7 Capsicum annuum HOM05D001750 ORTHO05D001825 2.8e-24 115.9 64 90.6
Solyc00g500195.1 Solanum lycopersicum HOM05D001750 ORTHO05D001825 2.8e-24 115.9 64 90.6
PGSC0003DMG400029008 Solanum tuberosum HOM05D001750 ORTHO05D001825 2.8e-24 115.9 64 90.6
arahy.Tifrunner.gnm1.ann1.5P7K6N Arachis hypogaea HOM05D001750 ORTHO05D001825 3.7e-24 115.5 64 90.6
arahy.Tifrunner.gnm1.ann1.B6WU7N Arachis hypogaea HOM05D001750 ORTHO05D001825 3.7e-24 115.5 64 90.6
DCAR_032533 Daucus carota HOM05D001750 ORTHO05D001825 3.7e-24 115.5 104 63.5
Gohir.1Z049581 Gossypium hirsutum HOM05D001750 ORTHO05D001825 3.7e-24 115.5 64 90.6
HanXRQChr02g0059681 Helianthus annuus HOM05D001750 ORTHO05D001825 6.2e-24 114.8 71 78.9
HanXRQChr05g0152401 Helianthus annuus HOM05D001750 ORTHO05D001825 6.2e-24 114.8 71 78.9
HanXRQChr06g0182971 Helianthus annuus HOM05D001750 ORTHO05D001825 6.2e-24 114.8 71 78.9
HanXRQCPg0580391 Helianthus annuus HOM05D001750 ORTHO05D001825 6.2e-24 114.8 71 78.9
Lj2P1238T72 Lonicera japonica HOM05D001750 ORTHO05D001825 1.8e-23 113.2 64 85.9
unitig_736.g22737 Utricularia gibba HOM05D001750 ORTHO05D001825 2.4e-23 112.8 65 83.1
HanXRQChr08g0212841 Helianthus annuus HOM05D001750 ORTHO05D001825 3.1e-23 112.5 71 77.5
Nn031s41610 Nelumbo nucifera HOM05D001750 ORTHO05D001825 1.5e-22 110.2 64 87.5
PSO548G0117 Papaver somniferum HOM05D001750 ORTHO05D001825 1.5e-22 110.2 64 84.4
HanXRQChr17g0557801 Helianthus annuus HOM05D001750 ORTHO05D001825 3.4e-22 109.0 71 74.6
SEGI_05928 Sequoiadendron giganteum HOM05D001750 ORTHO05D001825 3.4e-22 109.0 69 79.7
Gorai.006G066100 Gossypium raimondii HOM05D001750 ORTHO05D001825 5.8e-22 108.2 64 87.5
Gohir.D09G044501 Gossypium hirsutum HOM05D001750 ORTHO05D001825 7.6e-22 107.8 64 85.9
SEGI_32159 Sequoiadendron giganteum HOM05D001750 ORTHO05D001825 7.6e-22 107.8 64 82.8
SEGI_32489 Sequoiadendron giganteum HOM05D001750 ORTHO05D001825 7.6e-22 107.8 64 82.8
SEGI_35420 Sequoiadendron giganteum HOM05D001750 ORTHO05D001825 7.6e-22 107.8 64 82.8
HanXRQChr01g0020101 Helianthus annuus HOM05D001750 ORTHO05D001825 9.9e-22 107.5 60 86.7
HanXRQChr09g0258551 Helianthus annuus HOM05D001750 ORTHO05D001825 9.9e-22 107.5 60 86.7
unitig_91.g26524 Utricularia gibba HOM05D001750 ORTHO05D001825 1.7e-21 106.7 60 85.0
CAN.G1045.16 Capsicum annuum HOM05D001750 ORTHO05D001825 2.2e-21 106.3 63 85.7
Solyc01g017100.2 Solanum lycopersicum HOM05D001750 ORTHO05D001825 4.9e-21 105.1 64 82.8
Glyma.11G081100 Glycine max HOM05D001750 ORTHO05D001825 6.4e-21 104.8 64 81.2
SEGI_16404 Sequoiadendron giganteum HOM05D001387 ORTHO05D001250 8.4e-21 104.4 64 81.2
BolSC43t60806H Brassica oleracea HOM05D001750 ORTHO05D001825 3.2e-20 102.4 64 81.2
Lsat_1_v5_gn_5_52761 Lactuca sativa HOM05D001750 ORTHO05D001825 4.2e-20 102.1 72 73.6
EL10Ac1g00371 Beta vulgaris HOM05D001750 ORTHO05D001825 9.3e-20 100.9 53 92.5
arahy.Tifrunner.gnm1.ann1.GEK8SS Arachis hypogaea HOM05D001750 ORTHO05D001825 1.6e-19 100.1 56 89.3
Solyc11g021190.2 Solanum lycopersicum HOM05D001750 ORTHO05D001825 3.5e-19 99.0 58 86.2
Gohir.D02G112150 Gossypium hirsutum HOM05D001750 ORTHO05D001825 8.7e-18 94.4 83 62.7
Migut.L00571 Erythranthe guttata HOM05D001750 ORTHO05D001825 1.1e-17 94.0 56 80.4
Sed0003522 Sechium edule HOM05D000963 ORTHO05D004715 1.1e-17 94.0 51 90.2
Gorai.010G151000 Gossypium raimondii HOM05D001750 ORTHO05D001825 1.5e-17 93.6 59 81.4
HanXRQChr11g0323711 Helianthus annuus HOM05D001750 ORTHO05D001825 2.1e-16 89.7 51 84.3
Gorai.005G127100 Gossypium raimondii HOM05D001750 ORTHO05D001825 2.8e-16 89.4 56 82.1
Solyc02g011710.1 Solanum lycopersicum HOM05D001750 ORTHO05D001825 5.3e-15 85.1 67 68.7
Mapoly0092s0002 Marchantia polymorpha HOM05D001750 ORTHO05D001825 1.5e-14 83.6 56 66.1
SMO086G0048 Selaginella moellendorffii HOM05D001750 ORTHO05D001825 2.6e-14 82.8 61 63.9
Gohir.D06G183633 Gossypium hirsutum HOM05D001750 ORTHO05D001825 2.9e-13 79.3 56 71.4
Gorai.005G011700 Gossypium raimondii HOM05D001750 ORTHO05D001825 3.2e-12 75.9 49 79.6
Gohir.A04G039180 Gossypium hirsutum HOM05D001750 ORTHO05D001825 1.2e-11 73.9 40 92.5
EL10Ac1g01155 Beta vulgaris HOM05D001750 ORTHO05D001825 6.1e-11 71.6 64 62.5
BolC9t56810H Brassica oleracea HOM05D001750 ORTHO05D001825 8.7e-10 67.8 36 88.9
BolSC49t61137H Brassica oleracea HOM05D001750 ORTHO05D001825 8.7e-10 67.8 36 88.9
SabraPtG0005600 Salix brachista HOM05D000533 ORTHO05D006151 1.9e-09 66.6 36 88.9
Lalb_Chr16g0388571 Lupinus albus HOM05D001750 ORTHO05D001825 2.5e-09 66.2 37 86.5
EL10As15g24136 Beta vulgaris HOM05D001750 ORTHO05D001825 7.4e-09 64.7 59 57.6
Oeu012766.1 Olea europaea HOM05D001750 ORTHO05D001825 2.2e-08 63.2 60 60.0
HanXRQChr00c0289g0573101 Helianthus annuus HOM05D001750 ORTHO05D001825 3.7e-08 62.4 43 67.4
Oeu016296.1 Olea europaea HOM05D001750 ORTHO05D001825 1.8e-07 60.1 64 56.2
Oeu058353.1 Olea europaea HOM05D001750 ORTHO05D001825 5.3e-07 58.5 60 56.7
Nitab4.5_0007400g0130 Nicotiana tabacum HOM05D001750 ORTHO05D001825 9.0e-07 57.8 36 80.6
ECA041G0001 Erigeron canadensis HOM05D001750 ORTHO05D001825 1.5e-06 57.0 65 44.6
EL10As4g23402 Beta vulgaris HOM05D001750 ORTHO05D001825 2.0e-06 56.6 55 56.4
SHI48909 Sapria himalayana HOM05D001750 ORTHO05D001825 3.4e-06 55.8 61 47.5
Haze_27121 Corylus avellana HOM05D001750 ORTHO05D001825 5.9e-06 55.1 41 56.1
Glyma.15G187600 Glycine max HOM05D001750 ORTHO05D001825 5.9e-06 55.1 61 45.9
Glyma.15G187800 Glycine max HOM05D001750 ORTHO05D001825 5.9e-06 55.1 61 45.9
Ah.10g027940 Amaranthus hybridus HOM05D001750 ORTHO05D001825 7.7e-06 54.7 61 45.9
Ah.10g028650 Amaranthus hybridus HOM05D001750 ORTHO05D001825 7.7e-06 54.7 61 45.9
ATMG00513 Arabidopsis thaliana HOM05D001750 ORTHO05D001825 7.7e-06 54.7 61 45.9
arahy.Tifrunner.gnm1.ann1.BE3YYP Arachis hypogaea HOM05D001750 ORTHO05D001825 7.7e-06 54.7 61 45.9
arahy.Tifrunner.gnm1.ann1.KHE2M7 Arachis hypogaea HOM05D001750 ORTHO05D001825 7.7e-06 54.7 61 45.9
BolSC28t60406H Brassica oleracea HOM05D001750 ORTHO05D001825 7.7e-06 54.7 61 45.9
BolSC28t60420H Brassica oleracea HOM05D001750 ORTHO05D001825 7.7e-06 54.7 61 45.9
BraSC77t46633Z Brassica rapa HOM05D001750 ORTHO05D001825 7.7e-06 54.7 61 45.9
Cpa.g.sc900.3 Carica papaya HOM05D001750 ORTHO05D001825 7.7e-06 54.7 61 45.9
Cfa005537 Carpinus fangiana HOM05D001750 ORTHO05D001825 7.7e-06 54.7 61 45.9
Cfa022996 Carpinus fangiana HOM05D001750 ORTHO05D001825 7.7e-06 54.7 61 45.9
CDE02G3422 Ceratophyllum demersum HOM05D001750 ORTHO05D001825 7.7e-06 54.7 61 45.9
AUR62042331 Chenopodium quinoa HOM05D001750 ORTHO05D001825 7.7e-06 54.7 61 45.9
Ca_22167_v3 Cicer arietinum L. HOM05D001750 ORTHO05D001825 7.7e-06 54.7 61 45.9
Ca_22168_v3 Cicer arietinum L. HOM05D001750 ORTHO05D001825 7.7e-06 54.7 61 45.9
Dinv06672 Davidia involucrata HOM05D001750 ORTHO05D001825 7.7e-06 54.7 61 45.9
Dinv18904 Davidia involucrata HOM05D001750 ORTHO05D001825 7.7e-06 54.7 61 45.9
ECA039G0010 Erigeron canadensis HOM05D001750 ORTHO05D001825 7.7e-06 54.7 61 45.9
ECA234G2654 Erigeron canadensis HOM05D001750 ORTHO05D001825 7.7e-06 54.7 61 45.9
FvH4_c1g00470 Fragaria vesca HOM05D001750 ORTHO05D001825 7.7e-06 54.7 61 45.9
FAN14G4205 Fragaria x ananassa HOM05D001750 ORTHO05D001825 7.7e-06 54.7 61 45.9
Gorai.001G163400 Gossypium raimondii HOM05D001750 ORTHO05D001825 7.7e-06 54.7 61 45.9
HanXRQMTg0579361 Helianthus annuus HOM05D001750 ORTHO05D001825 7.7e-06 54.7 61 45.9
Hma1.2p1_0034F.1_g021420 Hydrangea macrophylla HOM05D001750 ORTHO05D001825 7.7e-06 54.7 61 45.9
Lj2C1233T24 Lonicera japonica HOM05D001750 ORTHO05D001825 7.7e-06 54.7 61 45.9
LjContig00315g0010666 Lotus japonicus HOM05D001750 ORTHO05D001825 7.7e-06 54.7 61 45.9
Lalb_Chr17g0337371 Lupinus albus HOM05D001750 ORTHO05D001825 7.7e-06 54.7 61 45.9
MBI05_g05342_MAGBIO Magnolia biondii HOM05D001750 ORTHO05D001825 7.7e-06 54.7 61 45.9
MBI06_g25391_MAGBIO Magnolia biondii HOM05D001750 ORTHO05D001825 7.7e-06 54.7 61 45.9
Nn117s43413 Nelumbo nucifera HOM05D001750 ORTHO05D001825 7.7e-06 54.7 61 45.9
Nn117s43418 Nelumbo nucifera HOM05D001750 ORTHO05D001825 7.7e-06 54.7 61 45.9
Nn1g10108 Nelumbo nucifera HOM05D001750 ORTHO05D001825 7.7e-06 54.7 61 45.9
Nn1g10189 Nelumbo nucifera HOM05D001750 ORTHO05D001825 7.7e-06 54.7 61 45.9
Nn1g10194 Nelumbo nucifera HOM05D001750 ORTHO05D001825 7.7e-06 54.7 61 45.9
Peaxi162Scf00451g00046 Petunia axillaris HOM05D001750 ORTHO05D001825 7.7e-06 54.7 61 45.9
Phvul.005G088400 Phaseolus vulgaris HOM05D001750 ORTHO05D001825 7.7e-06 54.7 61 45.9
RhsimMtG0004100 Rhododendron simsii HOM05D001750 ORTHO05D001825 7.7e-06 54.7 61 45.9
RcHm_v2.0_MTg0498221 Rosa chinensis HOM05D001750 ORTHO05D001825 7.7e-06 54.7 61 45.9
SabraMtG0002600 Salix brachista HOM05D001750 ORTHO05D001825 7.7e-06 54.7 61 45.9
SalBow1G5977 Salvia bowleyana HOM05D001750 ORTHO05D001825 7.7e-06 54.7 61 45.9
Sp3g25940 Schrenkiella parvula HOM05D001750 ORTHO05D001825 7.7e-06 54.7 61 45.9
Sed0023702 Sechium edule HOM05D001750 ORTHO05D001825 7.7e-06 54.7 61 45.9
Hund27692 Selenicereus undatus HOM05D001750 ORTHO05D001825 7.7e-06 54.7 61 45.9
Hund29041 Selenicereus undatus HOM05D001750 ORTHO05D001825 7.7e-06 54.7 61 45.9
Hund29121 Selenicereus undatus HOM05D001750 ORTHO05D001825 7.7e-06 54.7 61 45.9
Hund31001 Selenicereus undatus HOM05D001750 ORTHO05D001825 7.7e-06 54.7 61 45.9
Solyc00g500098.1 Solanum lycopersicum HOM05D001750 ORTHO05D001825 7.7e-06 54.7 61 45.9
Solyc00g500169.1 Solanum lycopersicum HOM05D001750 ORTHO05D001825 7.7e-06 54.7 61 45.9
Solyc00g500271.1 Solanum lycopersicum HOM05D001750 ORTHO05D001825 7.7e-06 54.7 61 45.9
Solyc00g500317.1 Solanum lycopersicum HOM05D001750 ORTHO05D001825 7.7e-06 54.7 61 45.9
SGA_v2.0_scaffold245G44452 Striga asiatica HOM05D001750 ORTHO05D001825 7.7e-06 54.7 61 45.9
TPR.G28320 Trifolium pratense HOM05D001750 ORTHO05D001825 7.7e-06 54.7 61 45.9
VMungo0329G0001 Vigna mungo HOM05D001750 ORTHO05D001825 7.7e-06 54.7 61 45.9
Zm00001eb384430 Zea mays HOM05D001750 ORTHO05D001825 7.7e-06 54.7 61 45.9
Zm00001eb384490 Zea mays HOM05D001750 ORTHO05D001825 7.7e-06 54.7 61 45.9
Zm00001eb384540 Zea mays HOM05D001750 ORTHO05D001825 7.7e-06 54.7 61 45.9
Zm00001eb437920 Zea mays HOM05D001750 ORTHO05D001825 7.7e-06 54.7 61 45.9
Zm00001eb438010 Zea mays HOM05D001750 ORTHO05D001825 7.7e-06 54.7 61 45.9
Zm00001eb439010 Zea mays HOM05D001750 ORTHO05D001825 7.7e-06 54.7 61 45.9
Zm00001eb440820 Zea mays HOM05D001750 ORTHO05D001825 7.7e-06 54.7 61 45.9
Zm00001eb442540 Zea mays HOM05D001750 ORTHO05D001825 7.7e-06 54.7 61 45.9
Hma1.2p1_1529F.1_g289140 Hydrangea macrophylla HOM05D001750 ORTHO05D001825 1.0e-05 54.3 61 45.9
SHI35585 Sapria himalayana HOM05D001750 ORTHO05D001825 1.0e-05 54.3 61 45.9
GSVIVG01004971001 Vitis vinifera HOM05D001750 ORTHO05D001825 1.0e-05 54.3 60 53.3


User provided reference genes

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