Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G33668 Trifolium pratense HOM05D001964 ORTHO05D001879 2.4e-69 265.8 177 100.0
Medtr3g491870 Medicago truncatula HOM05D001964 ORTHO05D001879 4.1e-53 211.8 158 92.4
Psat5g075400 Pisum sativum HOM05D001964 ORTHO05D001879 2.7e-52 209.1 158 91.1
Ca_16725_v3 Cicer arietinum L. HOM05D001964 ORTHO05D001879 7.8e-52 207.6 159 92.5
VMungo1309G0711 Vigna mungo HOM05D001964 ORTHO05D001879 3.2e-45 185.7 158 84.2
Lj1g0001644 Lotus japonicus HOM05D001964 ORTHO05D001879 5.4e-45 184.9 156 85.3
Glyma.06G131200 Glycine max HOM05D001964 ORTHO05D001879 7.8e-44 181.0 155 83.2
Glyma.04G233600 Glycine max HOM05D001964 ORTHO05D001879 3.0e-43 179.1 154 83.1
Phvul.009G050500 Phaseolus vulgaris HOM05D001964 ORTHO05D001879 7.3e-42 174.5 158 82.9
Lalb_Chr23g0271661 Lupinus albus HOM05D001964 ORTHO05D001879 2.1e-41 172.9 161 81.4
arahy.Tifrunner.gnm1.ann1.C1Z395 Arachis hypogaea HOM05D001964 ORTHO05D001879 3.6e-41 172.2 153 83.0
arahy.Tifrunner.gnm1.ann1.T1AGTK Arachis hypogaea HOM05D001964 ORTHO05D001879 3.6e-41 172.2 153 83.0
CANSAT21G2059 Cannabis sativa HOM05D001964 ORTHO05D001879 5.3e-40 168.3 153 81.7
Lalb_Chr08g0240091 Lupinus albus HOM05D001964 ORTHO05D001879 6.9e-40 167.9 159 79.9
Prupe.2G314100 Prunus persica HOM05D001964 ORTHO05D001879 6.9e-40 167.9 157 79.6
CiPaw.05G198800 Carya illinoinensis HOM05D001964 ORTHO05D001879 4.4e-39 165.2 96 76.0
RcHm_v2.0_Chr1g0381681 Rosa chinensis HOM05D001964 ORTHO05D001879 1.3e-38 163.7 155 78.1
arahy.Tifrunner.gnm1.ann1.PY5NER Arachis hypogaea HOM05D001964 ORTHO05D001879 2.2e-38 162.9 155 80.0
COL.COLO4_16800 Corchorus olitorius HOM05D001964 ORTHO05D001879 8.4e-38 161.0 151 80.1
QL09p007883 Quercus lobata HOM05D001964 ORTHO05D001879 1.4e-37 160.2 155 77.4
Actinidia08669 Actinidia chinensis HOM05D001964 ORTHO05D001879 3.2e-37 159.1 152 78.3
Ciclev10020753m.g Citrus clementina HOM05D001964 ORTHO05D001879 4.2e-37 158.7 94 76.6
Dinv29263 Davidia involucrata HOM05D001964 ORTHO05D001879 7.1e-37 157.9 152 79.6
Potri.015G010200 Populus trichocarpa HOM05D001964 ORTHO05D001879 7.1e-37 157.9 149 79.9
Duzib205G0723 Durio zibethinus HOM05D001964 ORTHO05D001879 1.6e-36 156.8 152 78.9
Potri.012G017700 Populus trichocarpa HOM05D001964 ORTHO05D001879 2.1e-36 156.4 151 78.8
Actinidia34236 Actinidia chinensis HOM05D001964 ORTHO05D001879 3.5e-36 155.6 150 78.7
CiPaw.06G044700 Carya illinoinensis HOM05D001964 ORTHO05D001879 4.6e-36 155.2 92 77.2
Dinv35347 Davidia involucrata HOM05D001108 ORTHO05D001619 6.0e-36 154.8 95 75.8
Duzib068G1035 Durio zibethinus HOM05D001964 ORTHO05D001879 1.3e-35 153.7 152 78.3
Lj3A899G63 Lonicera japonica HOM05D001964 ORTHO05D001879 1.3e-35 153.7 94 76.6
MD01G1223600 Malus domestica HOM05D001964 ORTHO05D001879 1.3e-35 153.7 146 80.1
Hma1.2p1_0591F.1_g185185 Hydrangea macrophylla HOM05D001964 ORTHO05D001879 1.7e-35 153.3 95 75.8
FAN10G3638 Fragaria x ananassa HOM05D001964 ORTHO05D001879 2.3e-35 152.9 155 74.8
MD07G1294300 Malus domestica HOM05D001964 ORTHO05D001879 2.3e-35 152.9 149 77.9
GSVIVG01038582001 Vitis vinifera HOM05D001964 ORTHO05D001879 5.1e-35 151.8 86 79.1
Peaxi162Scf00075g00120 Petunia axillaris HOM05D001964 ORTHO05D001879 1.5e-34 150.2 153 73.9
Ah.07g205340 Amaranthus hybridus HOM05D001964 ORTHO05D001879 1.9e-34 149.8 155 74.8
Hund11641 Selenicereus undatus HOM05D001964 ORTHO05D001879 1.9e-34 149.8 93 75.3
Thecc.03G202000 Theobroma cacao HOM05D001964 ORTHO05D001879 1.9e-34 149.8 94 73.4
Hund21019 Selenicereus undatus HOM05D001964 ORTHO05D001879 2.5e-34 149.4 145 76.6
arahy.Tifrunner.gnm1.ann1.Q6Q4B7 Arachis hypogaea HOM05D001964 ORTHO05D001879 3.3e-34 149.1 180 66.1
Cfa016208 Carpinus fangiana HOM05D001964 ORTHO05D001879 3.3e-34 149.1 90 75.6
FvH4_7g32090 Fragaria vesca HOM05D001964 ORTHO05D001879 3.3e-34 149.1 155 74.2
FAN01G3061 Fragaria x ananassa HOM05D001964 ORTHO05D001879 3.3e-34 149.1 155 74.2
FAN03G0004 Fragaria x ananassa HOM05D000020 ORTHO05D001879 3.3e-34 149.1 94 71.3
FAN10G4031 Fragaria x ananassa HOM05D001964 ORTHO05D001879 3.3e-34 149.1 94 71.3
Actinidia18661 Actinidia chinensis HOM05D001964 ORTHO05D001879 5.6e-34 148.3 83 80.7
Manes.01G040100 Manihot esculenta HOM05D001964 ORTHO05D001879 5.6e-34 148.3 152 75.0
TAR629G0758 Trochodendron aralioides HOM05D001964 ORTHO05D001879 7.3e-34 147.9 92 73.9
MELO3C005894.2 Cucumis melo HOM05D001964 ORTHO05D001879 9.6e-34 147.5 149 77.9
CsaV3_5G000390 Cucumis sativus L. HOM05D001964 ORTHO05D001879 2.1e-33 146.4 149 77.2
Gohir.A09G185300 Gossypium hirsutum HOM05D001964 ORTHO05D001879 2.1e-33 146.4 155 74.8
Sabra15G0008200 Salix brachista HOM05D001964 ORTHO05D001879 2.1e-33 146.4 175 65.1
AUR62035561 Chenopodium quinoa HOM05D001964 ORTHO05D001879 3.6e-33 145.6 155 71.0
TWI39G1041 Tripterygium wilfordii HOM05D001964 ORTHO05D001879 3.6e-33 145.6 155 76.8
Gorai.006G202200 Gossypium raimondii HOM05D001964 ORTHO05D001879 4.8e-33 145.2 155 73.5
Atru.chr12.2254 Acer truncatum HOM05D001964 ORTHO05D001879 6.2e-33 144.8 154 70.8
EL10Ac3g05250 Beta vulgaris HOM05D001964 ORTHO05D001879 6.2e-33 144.8 90 74.4
AUR62006066 Chenopodium quinoa HOM05D001964 ORTHO05D001879 1.1e-32 144.1 93 72.0
THA.LOC104799963 Tarenaya hassleriana HOM05D001964 ORTHO05D001879 1.1e-32 144.1 95 70.5
vmacro06400 Vaccinium macrocarpon HOM05D001964 ORTHO05D001879 1.1e-32 144.1 148 77.0
Haze_00237 Corylus avellana HOM05D001964 ORTHO05D001879 1.8e-32 143.3 159 73.0
Gohir.D09G180200 Gossypium hirsutum HOM05D001964 ORTHO05D001879 1.8e-32 143.3 155 72.9
Ah.13g070440 Amaranthus hybridus HOM05D001964 ORTHO05D001879 2.4e-32 142.9 92 72.8
Sc19g0000820 Simmondsia chinensis HOM05D001964 ORTHO05D001879 2.4e-32 142.9 93 74.2
SGA_v2.0_scaffold192G40523 Striga asiatica HOM05D001964 ORTHO05D001879 2.4e-32 142.9 140 78.6
ECA233G1600 Erigeron canadensis HOM05D001964 ORTHO05D001879 3.1e-32 142.5 94 71.3
Eucgr.K00399 Eucalyptus grandis HOM05D001964 ORTHO05D001879 4.0e-32 142.1 151 73.5
MBI18_g16986_MAGBIO Magnolia biondii HOM05D001964 ORTHO05D001879 5.3e-32 141.7 96 67.7
Nitab4.5_0005771g0010 Nicotiana tabacum HOM05D001964 ORTHO05D001879 6.9e-32 141.4 140 76.4
ClCG01G000330 Citrullus lanatus HOM05D001964 ORTHO05D001879 1.2e-31 140.6 93 68.8
AT5G53470 Arabidopsis thaliana HOM05D001964 ORTHO05D001879 2.0e-31 139.8 83 74.7
Peaxi162Scf00740g00243 Petunia axillaris HOM05D001964 ORTHO05D001879 2.6e-31 139.4 143 74.8
SalBow4G2133 Salvia bowleyana HOM05D001964 ORTHO05D001879 2.6e-31 139.4 80 78.8
BcaC03g14414 Brassica carinata HOM05D001964 ORTHO05D001879 4.5e-31 138.7 95 66.3
BolC2t07963H Brassica oleracea HOM05D001964 ORTHO05D001879 4.5e-31 138.7 95 66.3
C02p18290 Brassica napus HOM05D001964 ORTHO05D001879 7.6e-31 137.9 95 66.3
Cpa.g.sc3.107 Carica papaya HOM05D001964 ORTHO05D001879 7.6e-31 137.9 88 69.3
Thhalv10014004m.g Eutrema salsugineum HOM05D001964 ORTHO05D001879 7.6e-31 137.9 154 71.4
Nitab4.5_0012222g0010 Nicotiana tabacum HOM05D001964 ORTHO05D001879 7.6e-31 137.9 83 72.3
Sed0025752 Sechium edule HOM05D001964 ORTHO05D001879 7.6e-31 137.9 155 70.3
SGA_v2.0_scaffold44G16817 Striga asiatica HOM05D001964 ORTHO05D001879 7.6e-31 137.9 140 76.4
Carub.0008s1363 Capsella rubella HOM05D001964 ORTHO05D001879 9.9e-31 137.5 139 77.0
CAN.G481.36 Capsicum annuum HOM05D001964 ORTHO05D001879 9.9e-31 137.5 140 75.7
Duzib084G0046 Durio zibethinus HOM05D001964 ORTHO05D001879 1.3e-30 137.1 161 67.7
Sp6g15600 Schrenkiella parvula HOM05D001964 ORTHO05D001879 1.3e-30 137.1 95 66.3
MSTRG.27012 Avicennia marina HOM05D001964 ORTHO05D001879 1.7e-30 136.7 92 69.6
CARHR266590 Cardamine hirsuta HOM05D001964 ORTHO05D001879 1.7e-30 136.7 95 67.4
Aa31LG3G9630 Aethionema arabicum HOM05D001108 ORTHO05D001619 2.2e-30 136.3 92 67.4
PGR142G1958 Punica granatum HOM05D001964 ORTHO05D001879 2.2e-30 136.3 87 72.4
Sopen03g022730 Solanum pennellii HOM05D001964 ORTHO05D001879 2.9e-30 136.0 143 73.4
Oeu023664.1 Olea europaea HOM05D001964 ORTHO05D001879 4.9e-30 135.2 84 69.0
THA.LOC104825156 Tarenaya hassleriana HOM05D001964 ORTHO05D001879 4.9e-30 135.2 85 74.1
A02p11050 Brassica napus HOM05D001964 ORTHO05D001879 6.4e-30 134.8 95 65.3
BraA02t06170Z Brassica rapa HOM05D001964 ORTHO05D001879 6.4e-30 134.8 95 65.3
Carub.0007s1304 Capsella rubella HOM05D001964 ORTHO05D001879 1.9e-29 133.3 93 66.7
AL8G28170 Arabidopsis lyrata HOM05D001964 ORTHO05D001879 2.4e-29 132.9 88 70.5
AT4G27780 Arabidopsis thaliana HOM05D001964 ORTHO05D001879 2.4e-29 132.9 93 65.6
Cc02_g01280 Coffea canephora HOM05D001964 ORTHO05D001879 5.4e-29 131.7 135 79.3
Lsat_1_v5_gn_8_5421 Lactuca sativa HOM05D001964 ORTHO05D001879 5.4e-29 131.7 94 66.0
Solyc03g082910.4 Solanum lycopersicum HOM05D001964 ORTHO05D001879 5.4e-29 131.7 151 70.9
PGSC0003DMG400018524 Solanum tuberosum HOM05D001964 ORTHO05D001879 5.4e-29 131.7 150 70.0
Migut.F00193 Erythranthe guttata HOM05D001964 ORTHO05D001879 7.1e-29 131.3 92 64.1
AL7G24870 Arabidopsis lyrata HOM05D001964 ORTHO05D001879 1.2e-28 130.6 93 64.5
Lsat_1_v5_gn_9_49141 Lactuca sativa HOM05D001964 ORTHO05D001879 2.7e-28 129.4 150 70.7
Nn1g00319 Nelumbo nucifera HOM05D001964 ORTHO05D001879 2.7e-28 129.4 93 62.4
BcaB05g22047 Brassica carinata HOM05D001964 ORTHO05D001879 3.5e-28 129.0 93 63.4
unitig_52.g17714 Utricularia gibba HOM05D001964 ORTHO05D001879 4.6e-28 128.6 85 67.1
Sp7g25740 Schrenkiella parvula HOM05D001964 ORTHO05D001879 1.8e-27 126.7 96 61.5
ECA232G2641 Erigeron canadensis HOM05D001964 ORTHO05D001879 2.3e-27 126.3 150 70.7
BcaNung01621 Brassica carinata HOM05D001964 ORTHO05D001879 3.9e-27 125.6 92 65.2
HanXRQChr15g0485641 Helianthus annuus HOM05D001964 ORTHO05D001879 5.1e-27 125.2 140 72.9
Thhalv10025574m.g Eutrema salsugineum HOM05D001964 ORTHO05D001879 6.7e-27 124.8 94 59.6
A01p19230 Brassica napus HOM05D001964 ORTHO05D001879 1.9e-26 123.2 94 61.7
BcaC09g50538 Brassica carinata HOM05D001964 ORTHO05D001879 3.3e-26 122.5 82 67.1
BolC1t02373H Brassica oleracea HOM05D001964 ORTHO05D001879 3.3e-26 122.5 82 67.1
DCAR_020338 Daucus carota HOM05D001964 ORTHO05D001879 3.3e-26 122.5 139 74.1
Migut.F01015 Erythranthe guttata HOM05D001964 ORTHO05D001879 3.3e-26 122.5 95 62.1
CARHR235500 Cardamine hirsuta HOM05D001964 ORTHO05D001879 4.3e-26 122.1 89 62.9
Aqoxy7G00051 Aquilegia oxysepala HOM05D001964 ORTHO05D001879 1.6e-25 120.2 91 62.6
C01p24160 Brassica napus HOM05D001964 ORTHO05D001879 1.1e-24 117.5 90 60.0
HPP92_014736 Vanilla planifolia HOM05D001964 ORTHO05D001879 1.1e-24 117.5 94 58.5
BcaC06g32665 Brassica carinata HOM05D001964 ORTHO05D001879 3.4e-23 112.5 86 64.0
BraA01t01865Z Brassica rapa HOM05D001964 ORTHO05D001879 3.4e-23 112.5 106 52.8
ATR0680G144 Amborella trichopoda HOM05D001964 ORTHO05D001879 5.8e-23 111.7 93 54.8
Sabra12G0014800 Salix brachista HOM05D001964 ORTHO05D001879 5.8e-23 111.7 115 83.5
Aqoxy5G01997 Aquilegia oxysepala HOM05D001964 ORTHO05D001879 3.8e-22 109.0 92 58.7
CDE01G0749 Ceratophyllum demersum HOM05D001964 ORTHO05D001879 1.1e-21 107.5 80 58.8
CDE02G3119 Ceratophyllum demersum HOM05D001964 ORTHO05D001879 2.5e-21 106.3 79 57.0
PSO384G2260 Papaver somniferum HOM05D001964 ORTHO05D001879 2.5e-21 106.3 76 65.8
PSO478G2388 Papaver somniferum HOM05D001964 ORTHO05D001879 2.5e-21 106.3 76 64.5
PSO135G0495 Papaver somniferum HOM05D001964 ORTHO05D001879 1.2e-20 104.0 75 65.3
Gorai.006G067800 Gossypium raimondii HOM05D001964 ORTHO05D001879 2.3e-19 99.8 121 74.4
SEGI_15712 Sequoiadendron giganteum HOM05D001964 ORTHO05D001879 3.9e-19 99.0 91 49.5
FAN06G1141 Fragaria x ananassa HOM05D001964 ORTHO05D001879 5.7e-18 95.1 66 68.2
Gorai.003G056700 Gossypium raimondii HOM05D001964 ORTHO05D001879 7.4e-18 94.7 57 70.2
SMO116G0255 Selaginella moellendorffii HOM05D001964 ORTHO05D001879 2.1e-17 93.2 94 48.9
Gohir.D03G054050 Gossypium hirsutum HOM05D001964 ORTHO05D001879 8.2e-17 91.3 57 70.2
SMO195G0054 Selaginella moellendorffii HOM05D001964 ORTHO05D001879 2.4e-16 89.7 84 51.2
AagrBONN_evm.TU.Sc2ySwM_344.3382 Anthoceros agrestis HOM05D001964 ORTHO05D001879 2.0e-15 86.7 85 47.1
Oeu061002.1 Olea europaea HOM05D001964 ORTHO05D001879 3.8e-14 82.4 56 66.1
BcaC03g14415 Brassica carinata HOM05D001964 ORTHO05D001879 5.0e-14 82.0 62 59.7
Pp3c25_3380 Physcomitrium patens HOM05D001964 ORTHO05D001879 5.5e-13 78.6 77 46.8
Mapoly0094s0063 Marchantia polymorpha HOM05D001964 ORTHO05D001879 3.0e-11 72.8 63 55.6
Pp3c16_19020 Physcomitrium patens HOM05D001964 ORTHO05D001879 5.7e-10 68.6 61 50.8
Pp3c2_26760 Physcomitrium patens HOM05D002547 ORTHO05D002649 8.5e-06 54.7 59 44.1


User provided reference genes

Program Settings