Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G33664 Trifolium pratense HOM05D003457 ORTHO05D009249 8.0e-126 453.8 225 100.0
Medtr3g092670 Medicago truncatula HOM05D003457 ORTHO05D009249 2.0e-76 289.7 215 72.1
Psat5g072040 Pisum sativum HOM05D003457 ORTHO05D009249 2.3e-72 276.2 211 68.7
Ca_16777_v3 Cicer arietinum L. HOM05D003457 ORTHO05D009249 1.8e-69 266.5 217 65.0
Glyma.06G136400 Glycine max HOM05D003457 ORTHO05D009249 9.3e-50 201.1 235 51.1
Lj1g0002342 Lotus japonicus HOM05D003457 ORTHO05D009249 2.1e-49 199.9 229 52.0
VMungo1309G3135 Vigna mungo HOM05D003457 ORTHO05D009249 6.0e-49 198.4 213 56.3
Glyma.04G228600 Glycine max HOM05D003457 ORTHO05D009249 1.8e-48 196.8 231 52.8
Phvul.009G045300 Phaseolus vulgaris HOM05D003457 ORTHO05D009249 1.8e-48 196.8 213 55.4
FAN10G0211 Fragaria x ananassa HOM05D003457 ORTHO05D009746 3.7e-30 136.0 237 38.4
FAN03G1743 Fragaria x ananassa HOM05D003457 ORTHO05D009746 8.2e-30 134.8 237 37.1
FvH4_7g32890 Fragaria vesca HOM05D003457 ORTHO05D009249 6.9e-29 131.7 237 36.7
FAN01G1561 Fragaria x ananassa HOM05D003457 ORTHO05D009746 2.0e-28 130.2 254 37.0
FAN10G3191 Fragaria x ananassa HOM05D003457 ORTHO05D009746 5.5e-26 122.1 204 39.2
Lalb_Chr08g0239631 Lupinus albus HOM05D003457 ORTHO05D009249 5.5e-26 122.1 208 42.3
Gohir.D04G000050 Gossypium hirsutum HOM05D003457 ORTHO05D009249 7.2e-26 121.7 276 33.7
Gohir.D04G000080 Gossypium hirsutum HOM05D003457 ORTHO05D009249 3.6e-25 119.4 279 34.1
Gorai.012G000700 Gossypium raimondii HOM05D003457 ORTHO05D009249 3.6e-25 119.4 279 34.1
PGR142G1344 Punica granatum HOM05D003457 ORTHO05D009249 4.6e-25 119.0 265 35.5
Cpa.g.sc3.155 Carica papaya HOM05D003457 ORTHO05D009249 1.7e-22 110.5 300 30.3
Thecc.03G208400 Theobroma cacao HOM05D003457 ORTHO05D009249 1.7e-22 110.5 240 33.3
Ciclev10020653m.g Citrus clementina HOM05D003457 ORTHO05D009249 2.8e-22 109.8 221 39.4
RcHm_v2.0_Chr1g0382841 Rosa chinensis HOM05D003457 ORTHO05D009249 8.2e-22 108.2 238 34.9
Duzib068G0780 Durio zibethinus HOM05D003457 ORTHO05D009249 3.1e-21 106.3 279 30.5
CSS0022238 Camellia sinensis var. sinensis HOM05D003457 ORTHO05D009249 5.3e-21 105.5 262 31.3
CSS0029860 Camellia sinensis var. sinensis HOM05D003457 ORTHO05D009249 5.3e-21 105.5 262 31.3
MD07G1298800 Malus domestica HOM05D003457 ORTHO05D009249 5.3e-21 105.5 250 32.0
MD01G1228100 Malus domestica HOM05D003457 ORTHO05D009249 9.1e-21 104.8 252 31.3
Prupe.2G318600 Prunus persica HOM05D003457 ORTHO05D009249 9.1e-21 104.8 278 31.7
Migut.F00990 Erythranthe guttata HOM05D003457 ORTHO05D009249 1.2e-20 104.4 236 36.0
CsaV3_5G004840 Cucumis sativus L. HOM05D003457 ORTHO05D009249 2.0e-20 103.6 244 32.4
Duzib084G1096 Durio zibethinus HOM05D003457 ORTHO05D009249 2.0e-20 103.6 240 30.8
TWI23G0841 Tripterygium wilfordii HOM05D003457 ORTHO05D009249 2.0e-20 103.6 228 35.5
COL.COLO4_14368 Corchorus olitorius HOM05D003457 ORTHO05D009249 2.6e-20 103.2 169 40.2
ClCG00G005020 Citrullus lanatus HOM05D003457 ORTHO05D009249 3.4e-20 102.8 248 32.3
ClCG01G004590 Citrullus lanatus HOM05D003457 ORTHO05D009249 3.4e-20 102.8 248 32.3
ClCG01G004630 Citrullus lanatus HOM05D003457 ORTHO05D009249 3.4e-20 102.8 248 32.3
MELO3C033815.2 Cucumis melo HOM05D003457 ORTHO05D009249 7.7e-20 101.7 245 31.4
Manes.01G043100 Manihot esculenta HOM05D003457 ORTHO05D009249 2.2e-19 100.1 292 31.2
EL10Ac3g05182 Beta vulgaris HOM05D003457 ORTHO05D009249 5.0e-19 99.0 221 33.9
Dinv29212 Davidia involucrata HOM05D003457 ORTHO05D009249 5.0e-19 99.0 305 30.8
Duzib205G0475 Durio zibethinus HOM05D003457 ORTHO05D009249 6.5e-19 98.6 239 31.0
Rhsim03G0215300 Rhododendron simsii HOM05D003457 ORTHO05D009249 1.9e-18 97.1 211 34.6
Actinidia34268 Actinidia chinensis HOM05D003457 ORTHO05D009249 3.2e-18 96.3 278 29.9
SalBow2G2220 Salvia bowleyana HOM05D003457 ORTHO05D009249 4.2e-18 95.9 226 37.6
Dinv35380 Davidia involucrata HOM05D003457 ORTHO05D009746 5.5e-18 95.5 313 27.5
AT5G24500 Arabidopsis thaliana HOM05D003457 ORTHO05D009249 7.2e-18 95.1 235 33.6
BcaB07g29912 Brassica carinata HOM05D003457 ORTHO05D009249 7.2e-18 95.1 199 35.2
Ah.07g204690 Amaranthus hybridus HOM05D003457 ORTHO05D009249 1.6e-17 94.0 252 31.3
Cc02_g00840 Coffea canephora HOM05D003457 ORTHO05D009249 1.6e-17 94.0 228 33.3
Carub.0006s2232 Capsella rubella HOM05D003457 ORTHO05D009249 2.1e-17 93.6 236 34.3
Thhalv10005511m.g Eutrema salsugineum HOM05D003457 ORTHO05D009249 2.1e-17 93.6 255 32.5
Cfa016162 Carpinus fangiana HOM05D003457 ORTHO05D009249 3.6e-17 92.8 286 31.8
Sc13g0010260 Simmondsia chinensis HOM05D003457 ORTHO05D009249 3.6e-17 92.8 239 33.5
BcaC03g17967 Brassica carinata HOM05D003457 ORTHO05D009249 4.7e-17 92.4 189 35.4
A02p40300 Brassica napus HOM05D003457 ORTHO05D009249 4.7e-17 92.4 201 34.3
MSTRG.31 Avicennia marina HOM05D003457 ORTHO05D009249 6.1e-17 92.0 222 36.0
C02p60250 Brassica napus HOM05D003457 ORTHO05D009249 7.9e-17 91.7 191 35.1
CAN.G303.15 Capsicum annuum HOM05D003457 ORTHO05D009249 1.0e-16 91.3 231 34.2
Nitab4.5_0000319g0070 Nicotiana tabacum HOM05D003457 ORTHO05D009249 1.0e-16 91.3 262 31.7
BraA02t08999Z Brassica rapa HOM05D003457 ORTHO05D009249 1.4e-16 90.9 200 34.0
Sabra15G0003600 Salix brachista HOM05D003457 ORTHO05D009249 1.8e-16 90.5 255 30.6
Oeu037975.2 Olea europaea HOM05D003457 ORTHO05D009249 2.3e-16 90.1 217 32.7
Actinidia08697 Actinidia chinensis HOM05D003457 ORTHO05D009249 3.0e-16 89.7 229 31.0
Potri.015G005100 Populus trichocarpa HOM05D003457 ORTHO05D009249 3.0e-16 89.7 284 29.2
Sp2g22840 Schrenkiella parvula HOM05D003457 ORTHO05D009249 3.0e-16 89.7 226 32.3
CARHR188920 Cardamine hirsuta HOM05D003457 ORTHO05D009249 3.9e-16 89.4 238 33.2
Aa31LG11G3740 Aethionema arabicum HOM05D003457 ORTHO05D009249 5.1e-16 89.0 232 32.8
BolC2t12082H Brassica oleracea HOM05D003457 ORTHO05D009249 8.8e-16 88.2 190 34.7
THA.LOC104798986 Tarenaya hassleriana HOM05D003457 ORTHO05D009249 8.8e-16 88.2 234 32.1
TAR636G2436 Trochodendron aralioides HOM05D003457 ORTHO05D009249 8.8e-16 88.2 259 30.1
DCAR_020371 Daucus carota HOM05D003457 ORTHO05D009249 1.1e-15 87.8 196 33.2
Solyc03g081310.3 Solanum lycopersicum HOM05D003457 ORTHO05D009249 1.1e-15 87.8 246 30.9
Aqoxy5G04336 Aquilegia oxysepala HOM05D003457 ORTHO05D009249 1.5e-15 87.4 203 34.5
Sopen03g022030 Solanum pennellii HOM05D003457 ORTHO05D009249 2.0e-15 87.0 246 30.5
PGSC0003DMG400000588 Solanum tuberosum HOM05D003457 ORTHO05D009249 2.0e-15 87.0 243 30.0
AUR62006007 Chenopodium quinoa HOM05D003457 ORTHO05D009746 2.6e-15 86.7 212 34.9
AUR62035619 Chenopodium quinoa HOM05D003457 ORTHO05D009249 5.7e-15 85.5 231 32.9
Nitab4.5_0005040g0050 Nicotiana tabacum HOM05D003457 ORTHO05D009249 9.7e-15 84.7 256 30.1
Sabra05G0139600 Salix brachista HOM05D003457 ORTHO05D009249 9.7e-15 84.7 149 38.3
Eucgr.K00429 Eucalyptus grandis HOM05D003457 ORTHO05D009249 1.7e-14 84.0 261 30.3
SGA_v2.0_scaffold141G35555 Striga asiatica HOM05D003457 ORTHO05D009249 3.7e-14 82.8 189 32.8
TAR629G1045 Trochodendron aralioides HOM05D003457 ORTHO05D009249 8.2e-14 81.6 257 30.7
ATR1155G002 Amborella trichopoda HOM05D003457 ORTHO05D009249 1.4e-13 80.9 185 33.0
Peaxi162Scf00300g00833 Petunia axillaris HOM05D003457 ORTHO05D009249 1.4e-13 80.9 250 32.4
Nn1g00443 Nelumbo nucifera HOM05D003457 ORTHO05D009249 4.1e-13 79.3 288 29.2
Sabra12G0012300 Salix brachista HOM05D003457 ORTHO05D009249 7.0e-13 78.6 168 35.1
HPP92_015415 Vanilla planifolia HOM05D003457 ORTHO05D009249 2.0e-12 77.0 226 31.4
Potri.012G021300 Populus trichocarpa HOM05D003457 ORTHO05D009249 3.5e-12 76.3 71 53.5
AL6G36090 Arabidopsis lyrata HOM05D003457 ORTHO05D009249 4.5e-12 75.9 209 30.6
Lsat_1_v5_gn_7_20360 Lactuca sativa HOM05D003457 ORTHO05D009249 5.9e-12 75.5 183 32.8
CiPaw.06G041400 Carya illinoinensis HOM05D003457 ORTHO05D009249 3.8e-11 72.8 306 27.1
HanXRQChr08g0225921 Helianthus annuus HOM05D003457 ORTHO05D009249 1.1e-10 71.2 218 29.8
PSO782G2427 Papaver somniferum HOM05D003457 ORTHO05D009249 4.2e-10 69.3 230 27.4
CiPaw.02G048700 Carya illinoinensis HOM05D003457 ORTHO05D009249 9.4e-10 68.2 140 37.1
Atru.chr12.2426 Acer truncatum HOM05D003457 ORTHO05D009249 2.1e-09 67.0 67 52.2
Lsat_1_v5_gn_5_51360 Lactuca sativa HOM05D003457 ORTHO05D009249 2.1e-09 67.0 211 28.4
Lsat_1_v5_gn_8_4361 Lactuca sativa HOM05D003457 ORTHO05D009249 2.1e-09 67.0 211 28.4
Lsat_1_v5_gn_9_3980 Lactuca sativa HOM05D003457 ORTHO05D009249 2.1e-09 67.0 211 28.4
CDE02G1140 Ceratophyllum demersum HOM05D003457 ORTHO05D009249 8.0e-09 65.1 267 27.7
Lsat_1_v5_gn_1_120581 Lactuca sativa HOM05D003457 ORTHO05D009249 8.0e-09 65.1 214 27.1
QL09p007211 Quercus lobata HOM05D003457 ORTHO05D009249 8.0e-09 65.1 243 28.8
CDE01G0392 Ceratophyllum demersum HOM05D003457 ORTHO05D009249 1.0e-08 64.7 224 29.9
unitig_90.g27506 Utricularia gibba HOM05D003457 ORTHO05D009249 5.2e-08 62.4 157 35.7
MBI12_g09299_MAGBIO Magnolia biondii HOM05D003457 ORTHO05D009249 2.0e-07 60.5 173 30.1


User provided reference genes

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