Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G33563 Trifolium pratense HOM05D004389 ORTHO05D005457 5.7e-77 290.8 143 100.0
Glyma.05G086900 Glycine max HOM05D004389 ORTHO05D005457 8.9e-38 160.6 83 89.2
LjContig00312_ERROPOS870357g0027537 Lotus japonicus HOM05D004389 ORTHO05D005457 1.2e-37 160.2 83 90.4
Medtr3g096610 Medicago truncatula HOM05D004389 ORTHO05D005457 1.2e-37 160.2 83 92.8
Ca_16978_v3 Cicer arietinum L. HOM05D004389 ORTHO05D005457 1.5e-37 159.8 83 92.8
Medtr3g115100 Medicago truncatula HOM05D004389 ORTHO05D005457 2.6e-37 159.1 83 89.2
TPR.G33525 Trifolium pratense HOM05D004389 ORTHO05D005457 5.7e-37 157.9 83 89.2
Lj1g0012007 Lotus japonicus HOM05D004389 ORTHO05D005457 9.8e-37 157.1 83 88.0
Glyma.06G240600 Glycine max HOM05D004389 ORTHO05D005457 4.9e-36 154.8 83 88.0
Psat0s1802g0120 Pisum sativum HOM05D004389 ORTHO05D005457 1.8e-35 152.9 83 86.7
Psat0s2070g0160 Pisum sativum HOM05D004389 ORTHO05D005457 1.8e-35 152.9 83 86.7
COL.COLO4_29544 Corchorus olitorius HOM05D004389 ORTHO05D005457 4.1e-35 151.8 83 88.0
TWI73G0431 Tripterygium wilfordii HOM05D004389 ORTHO05D005457 4.1e-35 151.8 83 85.5
Hma1.2p1_0666F.1_g199560 Hydrangea macrophylla HOM05D004389 ORTHO05D005457 5.4e-35 151.4 83 86.7
Hma1.2p1_1362F.1_g278175 Hydrangea macrophylla HOM05D004389 ORTHO05D005457 5.4e-35 151.4 83 86.7
Thecc.05G307100 Theobroma cacao HOM05D004389 ORTHO05D005457 5.4e-35 151.4 83 86.7
Phvul.007G101500 Phaseolus vulgaris HOM05D004389 ORTHO05D005457 7.0e-35 151.0 83 86.7
Ciclev10002655m.g Citrus clementina HOM05D004389 ORTHO05D005457 2.0e-34 149.4 83 85.5
Gohir.A08G211800 Gossypium hirsutum HOM05D004389 ORTHO05D005457 2.0e-34 149.4 82 86.6
Gorai.004G242800 Gossypium raimondii HOM05D004389 ORTHO05D005457 2.0e-34 149.4 82 86.6
COL.COLO4_19842 Corchorus olitorius HOM05D004389 ORTHO05D005457 3.5e-34 148.7 83 85.5
Duzib177G0146 Durio zibethinus HOM05D004389 ORTHO05D005457 3.5e-34 148.7 83 85.5
Sabra13G0026700 Salix brachista HOM05D004389 ORTHO05D005457 3.5e-34 148.7 159 54.7
arahy.Tifrunner.gnm1.ann1.95MSG7 Arachis hypogaea HOM05D004389 ORTHO05D005457 4.5e-34 148.3 83 84.3
Dinv23968 Davidia involucrata HOM05D004389 ORTHO05D005457 7.8e-34 147.5 83 83.1
Gohir.D08G228501 Gossypium hirsutum HOM05D004389 ORTHO05D005457 7.8e-34 147.5 82 84.1
Duzib128G0997 Durio zibethinus HOM05D004389 ORTHO05D005457 1.0e-33 147.1 83 85.5
Nitab4.5_0002659g0010 Nicotiana tabacum HOM05D004389 ORTHO05D005457 1.3e-33 146.7 83 84.3
Nn8g41138 Nelumbo nucifera HOM05D004389 ORTHO05D005457 2.3e-33 146.0 83 83.1
Lj7A473T46 Lonicera japonica HOM05D004389 ORTHO05D005457 5.0e-33 144.8 83 83.1
Potri.005G036500 Populus trichocarpa HOM05D004389 ORTHO05D005457 6.6e-33 144.4 83 83.1
TAR383G0075 Trochodendron aralioides HOM05D004389 ORTHO05D005457 6.6e-33 144.4 83 84.3
Ciclev10018002m.g Citrus clementina HOM05D004389 ORTHO05D005457 8.6e-33 144.1 83 83.1
Nitab4.5_0002329g0100 Nicotiana tabacum HOM05D004389 ORTHO05D005457 8.6e-33 144.1 83 83.1
QL03p004595 Quercus lobata HOM05D004389 ORTHO05D005457 1.1e-32 143.7 82 82.9
Nitab4.5_0000401g0080 Nicotiana tabacum HOM05D004389 ORTHO05D005457 1.5e-32 143.3 83 81.9
PGR031G3032 Punica granatum HOM05D004389 ORTHO05D005457 1.5e-32 143.3 83 81.9
Cc02_g33710 Coffea canephora HOM05D004389 ORTHO05D005457 2.5e-32 142.5 83 80.7
Actinidia05713 Actinidia chinensis HOM05D004389 ORTHO05D005457 4.3e-32 141.7 83 83.1
Haze_23899 Corylus avellana HOM05D004389 ORTHO05D005457 4.3e-32 141.7 82 81.7
Peaxi162Scf02135g00022 Petunia axillaris HOM05D004389 ORTHO05D005457 4.3e-32 141.7 79 84.8
Eucgr.H04472 Eucalyptus grandis HOM05D004389 ORTHO05D005457 7.3e-32 141.0 83 79.5
Potri.013G025600 Populus trichocarpa HOM05D004389 ORTHO05D005457 7.3e-32 141.0 83 79.5
CANSAT21G2311 Cannabis sativa HOM05D004389 ORTHO05D005457 1.2e-31 140.2 82 81.7
vmacro08924 Vaccinium macrocarpon HOM05D004389 ORTHO05D005457 1.2e-31 140.2 83 81.9
vmacro22564 Vaccinium macrocarpon HOM05D004389 ORTHO05D005457 1.2e-31 140.2 83 81.9
DCAR_008416 Daucus carota HOM05D004389 ORTHO05D005457 1.6e-31 139.8 83 80.7
Aqoxy7G01925 Aquilegia oxysepala HOM05D004389 ORTHO05D005457 2.1e-31 139.4 83 79.5
CANSAT21G1920 Cannabis sativa HOM05D004389 ORTHO05D005457 2.1e-31 139.4 82 81.7
CsaV3_1G039140 Cucumis sativus L. HOM05D004389 ORTHO05D005457 2.1e-31 139.4 83 78.3
vmacro19638 Vaccinium macrocarpon HOM05D004389 ORTHO05D005457 2.1e-31 139.4 83 81.9
Haze_04228 Corylus avellana HOM05D004389 ORTHO05D005457 2.8e-31 139.0 83 80.7
Manes.09G078200 Manihot esculenta HOM05D004389 ORTHO05D005457 2.8e-31 139.0 83 80.7
Sed0018697 Sechium edule HOM05D004389 ORTHO05D005457 2.8e-31 139.0 81 80.2
Hund07052 Selenicereus undatus HOM05D004389 ORTHO05D005457 2.8e-31 139.0 83 79.5
MD04G1208300 Malus domestica HOM05D004389 ORTHO05D005457 3.6e-31 138.7 83 79.5
TWI53G0891 Tripterygium wilfordii HOM05D004389 ORTHO05D005457 3.6e-31 138.7 81 77.8
GSVIVG01006266001 Vitis vinifera HOM05D004389 ORTHO05D005457 3.6e-31 138.7 83 79.5
Aqoxy4G02160 Aquilegia oxysepala HOM05D004389 ORTHO05D005457 4.7e-31 138.3 83 80.7
Peaxi162Scf00523g00530 Petunia axillaris HOM05D004389 ORTHO05D005457 4.7e-31 138.3 83 80.7
Dinv40263 Davidia involucrata HOM05D004389 ORTHO05D005457 6.1e-31 137.9 83 80.7
PSO063G2909 Papaver somniferum HOM05D004389 ORTHO05D005457 6.1e-31 137.9 83 80.7
Solyc12g009810.3 Solanum lycopersicum HOM05D004389 ORTHO05D005457 6.1e-31 137.9 83 79.5
A01p20570 Brassica napus HOM05D004389 ORTHO05D005457 8.0e-31 137.5 83 78.3
ClCG03G016830 Citrullus lanatus HOM05D004389 ORTHO05D005457 8.0e-31 137.5 83 79.5
PSO782G4098 Papaver somniferum HOM05D004389 ORTHO05D005457 8.0e-31 137.5 83 80.7
MBI16_g00840_MAGBIO Magnolia biondii HOM05D004389 ORTHO05D005457 1.0e-30 137.1 83 78.3
Rhsim05G0143800 Rhododendron simsii HOM05D004389 ORTHO05D005457 1.4e-30 136.7 83 79.5
BcaB03g14176 Brassica carinata HOM05D004389 ORTHO05D005457 1.8e-30 136.3 83 78.3
BcaC09g50404 Brassica carinata HOM05D004389 ORTHO05D005457 1.8e-30 136.3 83 77.1
BcaNung00158 Brassica carinata HOM05D004389 ORTHO05D005457 1.8e-30 136.3 83 77.1
CiPaw.07G015300 Carya illinoinensis HOM05D004389 ORTHO05D005457 1.8e-30 136.3 82 79.3
PGSC0003DMG402007838 Solanum tuberosum HOM05D004389 ORTHO05D005457 1.8e-30 136.3 83 79.5
FAN05G0500 Fragaria x ananassa HOM05D004389 ORTHO05D005457 2.3e-30 136.0 83 80.7
Sopen12g004700 Solanum pennellii HOM05D004389 ORTHO05D005457 2.3e-30 136.0 83 79.5
PGSC0003DMG400030976 Solanum tuberosum HOM05D004389 ORTHO05D005457 2.3e-30 136.0 83 78.3
Atru.chr2.467 Acer truncatum HOM05D004389 ORTHO05D005457 3.0e-30 135.6 83 78.3
FAN05G1752 Fragaria x ananassa HOM05D004389 ORTHO05D005457 3.0e-30 135.6 83 79.5
Lj9C683G9 Lonicera japonica HOM05D004389 ORTHO05D005457 3.0e-30 135.6 82 76.8
Sp7g15350 Schrenkiella parvula HOM05D004389 ORTHO05D005457 3.0e-30 135.6 83 78.3
TAR626G0408 Trochodendron aralioides HOM05D004389 ORTHO05D005457 3.0e-30 135.6 83 80.7
BolC1t02532H Brassica oleracea HOM05D004389 ORTHO05D005457 4.0e-30 135.2 83 75.9
CARHR223240 Cardamine hirsuta HOM05D004389 ORTHO05D005457 4.0e-30 135.2 83 77.1
MELO3C015339.2 Cucumis melo HOM05D004389 ORTHO05D005457 4.0e-30 135.2 83 77.1
FvH4_6g05471 Fragaria vesca HOM05D004389 ORTHO05D005457 4.0e-30 135.2 83 79.5
FAN05G0231 Fragaria x ananassa HOM05D004389 ORTHO05D005457 4.0e-30 135.2 83 79.5
FAN05G0672 Fragaria x ananassa HOM05D004389 ORTHO05D005457 4.0e-30 135.2 83 79.5
FAN14G5008 Fragaria x ananassa HOM05D004389 ORTHO05D005457 4.0e-30 135.2 83 79.5
Sc16g0008410 Simmondsia chinensis HOM05D004389 ORTHO05D005457 4.0e-30 135.2 83 75.9
HPP92_010418 Vanilla planifolia HOM05D004389 ORTHO05D005457 4.0e-30 135.2 83 77.1
Cpa.g.sc58.76 Carica papaya HOM05D004389 ORTHO05D005457 6.8e-30 134.4 83 74.7
EL10Ac4g09330 Beta vulgaris HOM05D004389 ORTHO05D005457 8.9e-30 134.0 83 74.7
BraA01t01985Z Brassica rapa HOM05D004389 ORTHO05D005457 8.9e-30 134.0 83 77.1
FAN18G1342 Fragaria x ananassa HOM05D004389 ORTHO05D005457 8.9e-30 134.0 83 78.3
Aa31sc17G40 Aethionema arabicum HOM05D004389 ORTHO05D005457 1.2e-29 133.7 83 78.3
C01p25870 Brassica napus HOM05D004389 ORTHO05D005457 1.2e-29 133.7 83 75.9
Rhsim05G0010600 Rhododendron simsii HOM05D004389 ORTHO05D005457 1.2e-29 133.7 83 78.3
Sabra05G0037000 Salix brachista HOM05D004389 ORTHO05D005457 1.2e-29 133.7 79 79.7
Zm00001eb264580 Zea mays HOM05D004389 ORTHO05D005457 1.2e-29 133.7 82 79.3
Oeu045484.1 Olea europaea HOM05D004389 ORTHO05D005457 1.5e-29 133.3 83 78.3
Prupe.6G329200 Prunus persica HOM05D004389 ORTHO05D005457 1.5e-29 133.3 83 77.1
SGA_v2.0_scaffold11G05813 Striga asiatica HOM05D004389 ORTHO05D005457 1.5e-29 133.3 83 77.1
Lsat_1_v5_gn_7_96081 Lactuca sativa HOM05D004389 ORTHO05D005457 2.0e-29 132.9 83 75.9
RcHm_v2.0_Chr7g0218901 Rosa chinensis HOM05D004389 ORTHO05D005457 2.0e-29 132.9 83 77.1
Aa31sc17G90 Aethionema arabicum HOM05D004389 ORTHO05D005457 2.6e-29 132.5 83 77.1
CDE02G2165 Ceratophyllum demersum HOM05D004389 ORTHO05D005457 2.6e-29 132.5 82 78.0
RhsimUnG0192500 Rhododendron simsii HOM05D004389 ORTHO05D005457 2.6e-29 132.5 84 76.2
RcHm_v2.0_Chr3g0454251 Rosa chinensis HOM05D004389 ORTHO05D005457 2.6e-29 132.5 83 77.1
Zm00001eb272600 Zea mays HOM05D004389 ORTHO05D005457 2.6e-29 132.5 80 80.0
FAN09G0842 Fragaria x ananassa HOM05D004389 ORTHO05D005457 3.4e-29 132.1 83 78.3
Os02g0467700 Oryza sativa ssp. japonica HOM05D004389 ORTHO05D005457 3.4e-29 132.1 83 75.9
THA.LOC104805865 Tarenaya hassleriana HOM05D004389 ORTHO05D005457 3.4e-29 132.1 83 75.9
Ah.04g159790 Amaranthus hybridus HOM05D004389 ORTHO05D005457 5.8e-29 131.3 83 72.3
CSS0010710 Camellia sinensis var. sinensis HOM05D004389 ORTHO05D005457 5.8e-29 131.3 83 79.5
Cfa006553 Carpinus fangiana HOM05D004389 ORTHO05D003318 5.8e-29 131.3 77 81.8
AUR62006921 Chenopodium quinoa HOM05D004389 ORTHO05D005457 7.5e-29 131.0 83 74.7
Prupe.5G030200 Prunus persica HOM05D004389 ORTHO05D005457 7.5e-29 131.0 83 79.5
SGA_v2.0_scaffold16G07733 Striga asiatica HOM05D004389 ORTHO05D005457 9.8e-29 130.6 83 77.1
Zm00001eb058290 Zea mays HOM05D004389 ORTHO05D005457 9.8e-29 130.6 80 77.5
AL7G38020 Arabidopsis lyrata HOM05D004389 ORTHO05D005457 1.7e-28 129.8 83 74.7
Carub.0007s2468 Capsella rubella HOM05D004389 ORTHO05D005457 2.2e-28 129.4 83 74.7
AT4G16710 Arabidopsis thaliana HOM05D004389 ORTHO05D005457 4.9e-28 128.3 83 73.5
ECA236G1487 Erigeron canadensis HOM05D004389 ORTHO05D005457 8.3e-28 127.5 83 73.5
Thhalv10026361m.g Eutrema salsugineum HOM05D004389 ORTHO05D005457 8.3e-28 127.5 83 73.5
unitig_747.g21568 Utricularia gibba HOM05D004389 ORTHO05D005457 8.3e-28 127.5 83 74.7
Migut.N00707 Erythranthe guttata HOM05D004389 ORTHO05D005457 1.1e-27 127.1 83 73.5
AUR62005084 Chenopodium quinoa HOM05D004389 ORTHO05D005457 2.4e-27 125.9 82 73.2
HanXRQChr14g0460141 Helianthus annuus HOM05D004389 ORTHO05D005457 3.2e-27 125.6 83 72.3
AUR62000890 Chenopodium quinoa HOM05D004389 ORTHO05D005457 4.1e-27 125.2 83 72.3
CSS0006579 Camellia sinensis var. sinensis HOM05D004389 ORTHO05D005457 1.2e-26 123.6 83 74.7
FvH4_5g27531 Fragaria vesca HOM05D004389 ORTHO05D005457 3.5e-26 122.1 75 78.7
AUR62000567 Chenopodium quinoa HOM05D004389 ORTHO05D005457 6.0e-26 121.3 77 75.3
ATR0626G001 Amborella trichopoda HOM05D004389 ORTHO05D005457 1.0e-25 120.6 83 69.9
SEGI_15909 Sequoiadendron giganteum HOM05D004389 ORTHO05D005457 1.4e-22 110.2 83 65.1
Lalb_Chr05g0219701 Lupinus albus HOM05D004389 ORTHO05D005457 1.7e-20 103.2 83 66.3
SHI18162 Sapria himalayana HOM05D004389 ORTHO05D005457 2.2e-20 102.8 83 60.2
vmacro22211 Vaccinium macrocarpon HOM05D004389 ORTHO05D005457 2.2e-20 102.8 76 63.2
AagrBONN_evm.TU.Sc2ySwM_117.3666 Anthoceros agrestis HOM05D004389 ORTHO05D005457 4.9e-20 101.7 79 57.0
GSVIVG01000019001 Vitis vinifera HOM05D004389 ORTHO05D005457 4.9e-20 101.7 62 77.4
MD15G1188200 Malus domestica HOM05D004389 ORTHO05D005457 8.3e-20 100.9 71 69.0
AagrBONN_evm.TU.Sc2ySwM_344.4143 Anthoceros agrestis HOM05D007251 ORTHO05D009266 9.2e-19 97.4 79 55.7
vmacro15018 Vaccinium macrocarpon HOM05D004389 ORTHO05D005457 1.6e-18 96.7 67 68.7
Pp3c11_4930 Physcomitrium patens HOM05D004389 ORTHO05D005457 4.6e-18 95.1 82 57.3
HanXRQChr04g0126711 Helianthus annuus HOM05D004389 ORTHO05D005457 6.0e-18 94.7 81 60.5
CBR_g24390 Chara braunii HOM05D004389 ORTHO05D005457 3.0e-17 92.4 80 57.5
Mapoly0013s0083 Marchantia polymorpha HOM05D004389 ORTHO05D005457 5.0e-17 91.7 79 55.7
SMO171G0140 Selaginella moellendorffii HOM05D004389 ORTHO05D005457 1.9e-16 89.7 78 52.6
Actinidia39666 Actinidia chinensis HOM05D004389 ORTHO05D056204 2.8e-15 85.9 71 57.7
Cre13.g585850 Chlamydomonas reinhardtii HOM05D004389 ORTHO05D005457 6.4e-12 74.7 79 51.9
MCO09G816 Micromonas commoda HOM05D004389 ORTHO05D005457 1.9e-11 73.2 74 47.3
PRCOL_00003734 Prasinoderma coloniale HOM05D004389 ORTHO05D005457 2.4e-11 72.8 74 50.0


User provided reference genes

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