Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G33518 Trifolium pratense HOM05D003602 ORTHO05D004808 0.0e+00 1442.2 739 100.0
TPR.G20226 Trifolium pratense HOM05D003602 ORTHO05D004808 6.4e-265 917.5 857 62.5
Medtr8g027450 Medicago truncatula HOM05D003602 ORTHO05D004808 2.0e-250 869.4 857 59.7
Glyma.16G023700 Glycine max HOM05D003602 ORTHO05D004808 4.6e-247 858.2 851 58.5
Glyma.07G054900 Glycine max HOM05D003602 ORTHO05D004808 3.0e-246 855.5 851 58.4
Ca_23524_v3 Cicer arietinum L. HOM05D003602 ORTHO05D004808 1.8e-243 846.3 855 59.5
arahy.Tifrunner.gnm1.ann1.M38EY0 Arachis hypogaea HOM05D003602 ORTHO05D004808 4.0e-243 845.1 864 58.0
Lj3g0012795 Lotus japonicus HOM05D003602 ORTHO05D004808 6.9e-243 844.3 862 58.1
arahy.Tifrunner.gnm1.ann1.100NT6 Arachis hypogaea HOM05D003602 ORTHO05D004808 1.5e-242 843.2 864 57.9
VMungo0540G0473 Vigna mungo HOM05D003602 ORTHO05D004808 3.0e-238 828.9 851 58.2
Phvul.006G114200 Phaseolus vulgaris HOM05D003602 ORTHO05D004808 1.5e-237 826.6 851 57.8
VMungo0540G0209 Vigna mungo HOM05D003602 ORTHO05D004808 2.8e-236 822.4 851 56.9
Lalb_Chr04g0254381 Lupinus albus HOM05D003602 ORTHO05D004808 1.3e-233 813.5 855 56.6
Phvul.006G114111 Phaseolus vulgaris HOM05D003602 ORTHO05D004808 1.7e-233 813.1 853 57.0
Lalb_Chr17g0342751 Lupinus albus HOM05D003602 ORTHO05D004808 1.1e-232 810.4 856 55.8
Cfa003788 Carpinus fangiana HOM05D003602 ORTHO05D004808 1.4e-219 766.9 863 52.8
CiPaw.01G077200 Carya illinoinensis HOM05D003602 ORTHO05D004808 1.0e-217 760.8 864 52.8
QL08p045638 Quercus lobata HOM05D003602 ORTHO05D004808 1.7e-217 760.0 863 52.8
Haze_15672 Corylus avellana HOM05D003602 ORTHO05D004808 5.0e-217 758.4 863 52.4
Gohir.A07G137000 Gossypium hirsutum HOM05D003602 ORTHO05D004808 6.5e-217 758.1 865 52.4
Gorai.001G154000 Gossypium raimondii HOM05D003602 ORTHO05D004808 9.4e-216 754.2 865 52.1
Sed0022447 Sechium edule HOM05D003602 ORTHO05D004808 1.6e-215 753.4 864 52.0
TWI59G0599 Tripterygium wilfordii HOM05D003602 ORTHO05D004808 2.1e-215 753.1 860 52.3
Gohir.D07G142200 Gossypium hirsutum HOM05D003602 ORTHO05D004808 2.3e-214 749.6 865 51.9
ClCG05G000750 Citrullus lanatus HOM05D003602 ORTHO05D004808 3.9e-214 748.8 864 51.6
CsaV3_3G007970 Cucumis sativus L. HOM05D003602 ORTHO05D004808 3.9e-214 748.8 864 51.7
MELO3C006015.2 Cucumis melo HOM05D003602 ORTHO05D004808 3.3e-213 745.7 864 51.5
Manes.01G245400 Manihot esculenta HOM05D003602 ORTHO05D004808 1.3e-212 743.8 863 52.0
Thecc.01G340800 Theobroma cacao HOM05D003602 ORTHO05D004808 1.3e-212 743.8 865 51.9
COL.COLO4_06273 Corchorus olitorius HOM05D003602 ORTHO05D004808 2.2e-212 743.0 865 52.4
Eucgr.D02383 Eucalyptus grandis HOM05D003602 ORTHO05D004808 2.2e-212 743.0 871 50.7
MD01G1083100 Malus domestica HOM05D003602 ORTHO05D004808 2.2e-212 743.0 859 51.8
Sed0018077 Sechium edule HOM05D003602 ORTHO05D004808 3.7e-212 742.3 861 51.1
THA.LOC104817368 Tarenaya hassleriana HOM05D003602 ORTHO05D004808 8.2e-212 741.1 859 51.3
CANSAT56G2221 Cannabis sativa HOM05D003602 ORTHO05D004808 1.1e-211 740.7 866 51.5
Manes.05G021800 Manihot esculenta HOM05D003602 ORTHO05D004808 2.6e-210 736.1 863 51.1
Duzib138G1559 Durio zibethinus HOM05D003602 ORTHO05D004808 3.8e-209 732.3 874 50.8
Dinv34217 Davidia involucrata HOM05D003602 ORTHO05D004808 4.2e-208 728.8 864 49.7
Hma1.2p1_0390F.1_g142640 Hydrangea macrophylla HOM05D003602 ORTHO05D004808 5.5e-208 728.4 864 49.4
Potri.002G172700 Populus trichocarpa HOM05D003602 ORTHO05D004808 2.7e-207 726.1 863 51.1
Duzib133G0673 Durio zibethinus HOM05D003602 ORTHO05D004808 3.6e-207 725.7 862 51.5
Potri.014G100000 Populus trichocarpa HOM05D003602 ORTHO05D004808 2.3e-206 723.0 863 50.8
RcHm_v2.0_Chr1g0360031 Rosa chinensis HOM05D003602 ORTHO05D004808 3.0e-206 722.6 862 50.2
Lj7P499T29 Lonicera japonica HOM05D003602 ORTHO05D004808 8.8e-206 721.1 866 49.4
Sabra14G0073400 Salix brachista HOM05D003602 ORTHO05D004808 1.5e-205 720.3 863 50.8
Prupe.2G190300 Prunus persica HOM05D003602 ORTHO05D004808 2.6e-205 719.5 860 49.8
PGR042G2389 Punica granatum HOM05D003602 ORTHO05D004808 4.4e-205 718.8 861 50.3
Ciclev10018709m.g Citrus clementina HOM05D003602 ORTHO05D004808 1.3e-204 717.2 863 49.6
Sabra02G0140500 Salix brachista HOM05D003602 ORTHO05D004808 3.7e-204 715.7 863 50.2
CSS0032390 Camellia sinensis var. sinensis HOM05D003602 ORTHO05D004808 8.2e-204 714.5 865 49.7
MSTRG.17352 Avicennia marina HOM05D003602 ORTHO05D004808 1.4e-203 713.8 860 49.1
FAN03G2718 Fragaria x ananassa HOM05D003602 ORTHO05D004808 4.1e-203 712.2 861 49.8
vmacro07844 Vaccinium macrocarpon HOM05D003602 ORTHO05D004808 5.3e-203 711.8 858 49.8
FvH4_7g16830 Fragaria vesca HOM05D003602 ORTHO05D004808 9.1e-203 711.1 861 49.8
FAN01G1925 Fragaria x ananassa HOM05D003602 ORTHO05D004808 9.1e-203 711.1 861 49.7
Actinidia17298 Actinidia chinensis HOM05D003602 ORTHO05D004808 2.0e-202 709.9 861 49.1
Thhalv10001293m.g Eutrema salsugineum HOM05D003602 ORTHO05D004808 2.0e-202 709.9 872 49.1
CSS0048042 Camellia sinensis var. sinensis HOM05D003602 ORTHO05D004808 4.5e-202 708.8 859 49.0
FAN10G2704 Fragaria x ananassa HOM05D003602 ORTHO05D004808 1.0e-201 707.6 861 49.6
FAN10G3025 Fragaria x ananassa HOM05D003602 ORTHO05D004808 1.0e-201 707.6 861 49.5
Nn1g00272 Nelumbo nucifera HOM05D003602 ORTHO05D004808 1.0e-201 707.6 854 48.7
FAN06G4341 Fragaria x ananassa HOM05D003602 ORTHO05D004808 1.7e-201 706.8 861 49.6
Sp4g28560 Schrenkiella parvula HOM05D003602 ORTHO05D004808 2.9e-201 706.1 859 49.4
FAN06G1715 Fragaria x ananassa HOM05D003602 ORTHO05D004808 3.8e-201 705.7 861 49.5
CARHR141850 Cardamine hirsuta HOM05D003602 ORTHO05D004808 3.2e-200 702.6 859 48.8
AL4G45940 Arabidopsis lyrata HOM05D003602 ORTHO05D004808 5.5e-200 701.8 861 49.2
Carub.0004s2923 Capsella rubella HOM05D003602 ORTHO05D004808 1.6e-199 700.3 860 49.0
A05p01280 Brassica napus HOM05D003602 ORTHO05D004808 2.7e-199 699.5 872 48.6
BraA05t19126Z Brassica rapa HOM05D003602 ORTHO05D004808 2.7e-199 699.5 872 48.6
AT2G46520 Arabidopsis thaliana HOM05D003602 ORTHO05D004808 1.7e-196 690.3 861 48.4
Aqoxy7G00067 Aquilegia oxysepala HOM05D003602 ORTHO05D004808 2.8e-196 689.5 869 47.8
Rhsim03G0025100 Rhododendron simsii HOM05D003602 ORTHO05D004808 6.3e-196 688.3 863 47.3
Migut.N01537 Erythranthe guttata HOM05D003602 ORTHO05D004808 1.1e-195 687.6 859 47.8
Sopen01g039780 Solanum pennellii HOM05D003602 ORTHO05D004808 1.8e-195 686.8 856 48.1
PGSC0003DMG401000117 Solanum tuberosum HOM05D003602 ORTHO05D004808 2.4e-195 686.4 857 48.1
Nitab4.5_0001763g0060 Nicotiana tabacum HOM05D003602 ORTHO05D004808 5.3e-195 685.3 857 48.2
DCAR_008665 Daucus carota HOM05D003602 ORTHO05D004808 9.1e-195 684.5 855 47.4
Solyc01g096060.4 Solanum lycopersicum HOM05D003602 ORTHO05D004808 9.1e-195 684.5 856 48.1
Cc02_g39500 Coffea canephora HOM05D003602 ORTHO05D004808 2.6e-194 682.9 863 47.5
Nitab4.5_0002614g0030 Nicotiana tabacum HOM05D003602 ORTHO05D004808 5.9e-194 681.8 857 48.0
Actinidia39220 Actinidia chinensis HOM05D003602 ORTHO05D004808 7.7e-194 681.4 826 49.8
Oeu043228.1 Olea europaea HOM05D003602 ORTHO05D004808 1.7e-193 680.2 878 47.3
Peaxi162Scf00345g00023 Petunia axillaris HOM05D003602 ORTHO05D004808 1.5e-192 677.2 857 48.0
CAN.G1415.23 Capsicum annuum HOM05D003602 ORTHO05D004808 3.6e-191 672.5 857 47.3
SGA_v2.0_scaffold22G09976 Striga asiatica HOM05D003602 ORTHO05D004808 4.0e-190 669.1 859 46.1
SGA_v2.0_scaffold22G09979 Striga asiatica HOM05D003602 ORTHO05D004808 2.0e-189 666.8 859 45.9
Migut.B01885 Erythranthe guttata HOM05D003602 ORTHO05D004808 4.1e-187 659.1 829 47.5
C04p01410 Brassica napus HOM05D003602 ORTHO05D004808 5.9e-186 655.2 875 46.3
BolC4t21795H Brassica oleracea HOM05D003602 ORTHO05D004808 1.0e-185 654.4 875 46.3
HanXRQChr04g0120491 Helianthus annuus HOM05D003602 ORTHO05D004808 1.7e-185 653.7 874 45.3
Oeu007881.3 Olea europaea HOM05D003602 ORTHO05D004808 3.8e-185 652.5 950 43.9
ATR0605G321 Amborella trichopoda HOM05D003602 ORTHO05D004808 4.2e-184 649.0 854 45.7
Aa31LG1G27870 Aethionema arabicum HOM05D003602 ORTHO05D004808 1.6e-183 647.1 860 46.5
Lsat_1_v5_gn_7_961 Lactuca sativa HOM05D003602 ORTHO05D004808 1.8e-182 643.7 886 45.5
ECA236G0047 Erigeron canadensis HOM05D003602 ORTHO05D004808 2.0e-181 640.2 874 45.2
CARHR195690 Cardamine hirsuta HOM05D003602 ORTHO05D004808 3.4e-181 639.4 851 45.8
PSO135G0828 Papaver somniferum HOM05D003602 ORTHO05D004808 1.3e-180 637.5 888 44.4
Sc02g0002440 Simmondsia chinensis HOM05D003602 ORTHO05D004808 6.3e-180 635.2 866 43.9
Sc02g0002490 Simmondsia chinensis HOM05D003602 ORTHO05D004808 6.3e-180 635.2 866 43.9
PSO384G3294 Papaver somniferum HOM05D003602 ORTHO05D004808 8.3e-180 634.8 890 44.0
Medtr6g051660 Medicago truncatula HOM05D003602 ORTHO05D004808 3.1e-179 632.9 720 53.9
Dinv32601 Davidia involucrata HOM05D003602 ORTHO05D004808 4.1e-179 632.5 834 47.0
TAR375G0067 Trochodendron aralioides HOM05D003602 ORTHO05D004808 4.1e-179 632.5 811 47.0
Aqoxy4G00207 Aquilegia oxysepala HOM05D003602 ORTHO05D004808 1.2e-178 630.9 869 46.1
unitig_736.g22809 Utricularia gibba HOM05D003602 ORTHO05D004808 8.6e-177 624.8 862 44.3
SalBow2G0371 Salvia bowleyana HOM05D003602 ORTHO05D004808 1.5e-176 624.0 863 44.7
SEGI_02600 Sequoiadendron giganteum HOM05D003602 ORTHO05D004808 3.4e-173 612.8 861 42.6
QL11p045606 Quercus lobata HOM05D003602 ORTHO05D004808 9.8e-173 611.3 830 47.8
Hund27357 Selenicereus undatus HOM05D003602 ORTHO05D004808 1.3e-172 610.9 868 43.5
BcaC03g13954 Brassica carinata HOM05D003602 ORTHO05D004808 2.9e-169 599.7 819 45.9
SHI11330 Sapria himalayana HOM05D003602 ORTHO05D004808 2.9e-169 599.7 872 43.0
HPP92_002938 Vanilla planifolia HOM05D003602 ORTHO05D004808 1.2e-167 594.3 864 42.4
Psat4g162200 Pisum sativum HOM05D003602 ORTHO05D004808 3.1e-166 589.7 629 57.2
Mapoly0156s0024 Marchantia polymorpha HOM05D003602 ORTHO05D004808 1.5e-165 587.4 840 42.7
EL10Ac6g13271 Beta vulgaris HOM05D003602 ORTHO05D004808 7.5e-165 585.1 867 42.4
Carub.0001s3638 Capsella rubella HOM05D003602 ORTHO05D004808 2.9e-164 583.2 863 42.9
AUR62020311 Chenopodium quinoa HOM05D003602 ORTHO05D004808 1.6e-162 577.4 867 42.0
Pp3c27_3380 Physcomitrium patens HOM05D003602 ORTHO05D004808 7.8e-162 575.1 837 42.1
BcaC02g12682 Brassica carinata HOM05D003602 ORTHO05D004808 2.3e-161 573.5 591 54.1
Pp3c16_3270 Physcomitrium patens HOM05D003602 ORTHO05D004808 1.9e-160 570.5 837 41.5
Ah.03g136880 Amaranthus hybridus HOM05D003602 ORTHO05D004808 1.7e-156 557.4 868 41.1
Ah.14g081150 Amaranthus hybridus HOM05D003602 ORTHO05D004808 2.9e-156 556.6 868 41.5
BraA02t05946Z Brassica rapa HOM05D003602 ORTHO05D004808 5.6e-144 515.8 607 49.9
CARHR193560 Cardamine hirsuta HOM05D003602 ORTHO05D004808 2.8e-143 513.5 572 50.0
A02p08760 Brassica napus HOM05D003602 ORTHO05D004808 1.1e-142 511.5 617 49.1
SMO364G0669 Selaginella moellendorffii HOM05D003602 ORTHO05D004808 2.4e-142 510.4 858 37.9
MD07G1151800 Malus domestica HOM05D003602 ORTHO05D004808 5.8e-141 505.8 625 50.6
CBR_g50023 Chara braunii HOM05D003602 ORTHO05D004808 2.5e-136 490.3 882 37.4
CDE10G0721 Ceratophyllum demersum HOM05D003602 ORTHO05D004808 1.5e-133 481.1 600 46.2
EL10Ac8g18571 Beta vulgaris HOM05D003602 ORTHO05D004808 2.4e-131 473.8 680 43.4
Zm00001eb055080 Zea mays HOM05D003602 ORTHO05D004808 4.3e-128 463.0 785 38.0
Zm00001eb216140 Zea mays HOM05D003602 ORTHO05D004808 1.5e-125 454.5 785 38.1
AagrBONN_evm.TU.Sc2ySwM_228.4084 Anthoceros agrestis HOM05D003602 ORTHO05D004808 4.8e-119 433.0 708 39.4
TAR371G1016 Trochodendron aralioides HOM05D003602 ORTHO05D004808 1.8e-118 431.0 451 52.5
CDE10G0625 Ceratophyllum demersum HOM05D003602 ORTHO05D004808 2.1e-114 417.5 712 40.3
SMO358G0230 Selaginella moellendorffii HOM05D003602 ORTHO05D004808 4.3e-112 409.8 845 34.6
PRCOL_00001712 Prasinoderma coloniale HOM05D003602 ORTHO05D004808 4.1e-110 403.3 886 31.3
AagrBONN_evm.TU.Sc2ySwM_368.664__665 Anthoceros agrestis HOM05D003602 ORTHO05D004808 8.4e-108 395.6 714 37.1
AUR62011778 Chenopodium quinoa HOM05D003602 ORTHO05D004808 6.7e-105 386.0 522 45.0
Cre16.g685901 Chlamydomonas reinhardtii HOM05D003602 ORTHO05D004808 1.8e-102 377.9 851 30.9
MCO04G210 Micromonas commoda HOM05D003602 ORTHO05D004808 1.8e-102 377.9 891 30.3
Thhalv10019782m.g Eutrema salsugineum HOM05D003602 ORTHO05D004808 3.4e-93 347.1 801 34.6
FAN17G1261 Fragaria x ananassa HOM05D003602 ORTHO05D004808 1.4e-91 341.7 506 42.3
GSVIVG01027164001 Vitis vinifera HOM05D003602 ORTHO05D004808 5.0e-84 316.6 351 51.3
SalBow3G0266 Salvia bowleyana HOM05D003602 ORTHO05D004808 1.3e-79 302.0 307 51.8
Os01g0235400 Oryza sativa ssp. japonica HOM05D003602 ORTHO05D004808 5.5e-75 286.6 376 43.1
BolC2t07236H Brassica oleracea HOM05D003602 ORTHO05D004808 2.9e-68 264.2 456 41.9
Cpa.g.sc18.79 Carica papaya HOM05D003602 ORTHO05D004808 3.2e-67 260.8 200 64.5
BolC2t07237H Brassica oleracea HOM05D003602 ORTHO05D004808 1.2e-53 215.7 319 41.1
Psat4g156360 Pisum sativum HOM05D003602 ORTHO05D004808 4.6e-53 213.8 200 59.5
Lsat_1_v5_gn_2_68180 Lactuca sativa HOM05D003602 ORTHO05D004808 5.9e-53 213.4 251 50.2
BcaB03g13365 Brassica carinata HOM05D003602 ORTHO05D004808 5.0e-52 210.3 351 40.7
QL06p027270 Quercus lobata HOM05D004207 ORTHO05D005188 3.6e-50 204.1 221 53.4
Cfa023442 Carpinus fangiana HOM05D003602 ORTHO05D004808 2.9e-47 194.5 868 22.9
BcaC03g15021 Brassica carinata HOM05D003602 ORTHO05D018547 8.3e-47 193.0 749 29.8
ECA240G0654 Erigeron canadensis HOM05D003602 ORTHO05D004808 1.6e-45 188.7 483 34.2
Lj9C388G20 Lonicera japonica HOM05D003602 ORTHO05D004808 1.7e-39 168.7 182 54.9
Lj9A388T38 Lonicera japonica HOM05D003602 ORTHO05D004808 4.9e-39 167.2 145 60.0
QL04p077689 Quercus lobata HOM05D003602 ORTHO05D002925 5.1e-36 157.1 201 46.8
Prupe.2G190900 Prunus persica HOM05D003602 ORTHO05D004808 1.1e-35 156.0 358 34.6
QL10p039122 Quercus lobata HOM05D003602 ORTHO05D004808 2.8e-34 151.4 179 49.2
AL350U10020 Arabidopsis lyrata HOM05D003602 ORTHO05D004808 6.8e-33 146.7 464 25.0
Lsat_1_v5_gn_2_118340 Lactuca sativa HOM05D003602 ORTHO05D004808 4.9e-31 140.6 331 34.4
CAN.G1045.28 Capsicum annuum HOM05D003602 ORTHO05D004808 2.7e-29 134.8 120 55.8
BolC2t08632H Brassica oleracea HOM05D003602 ORTHO05D004808 2.5e-27 128.3 190 42.1
Psat0s1548g0040 Pisum sativum HOM05D000278 ORTHO05D015036 6.9e-25 120.2 65 90.8
QL02p042411 Quercus lobata HOM05D002707 ORTHO05D002925 8.4e-23 113.2 163 44.8
QL05p088277 Quercus lobata HOM05D003602 ORTHO05D007458 3.5e-21 107.8 79 67.1
COL.COLO4_28677 Corchorus olitorius HOM05D000591 ORTHO05D000579 7.3e-19 100.1 111 52.3
COL.COLO4_28675 Corchorus olitorius HOM05D000591 ORTHO05D011054 9.6e-19 99.8 117 48.7
Lsat_1_v5_gn_2_108301 Lactuca sativa HOM05D003602 ORTHO05D004808 4.8e-18 97.4 164 39.0
BcaB05g21496 Brassica carinata HOM05D003602 ORTHO05D018547 5.3e-17 94.0 128 50.0
Dinv07459 Davidia involucrata HOM05D003602 ORTHO05D004808 6.9e-17 93.6 72 63.9
Oeu004956.1 Olea europaea HOM05D003602 ORTHO05D004808 2.1e-13 82.0 221 31.7
BraA02t06614Z Brassica rapa HOM05D003602 ORTHO05D018547 3.3e-11 74.7 92 50.0
Lsat_1_v5_gn_2_118360 Lactuca sativa HOM05D003602 ORTHO05D020334 1.3e-10 72.8 78 50.0
AagrBONN_evm.TU.Sc2ySwM_368.663 Anthoceros agrestis HOM05D003602 ORTHO05D004808 2.8e-10 71.6 131 37.4
ECA247G2319 Erigeron canadensis HOM05D003602 ORTHO05D020334 6.9e-09 67.0 107 42.1
Lj6g0009697 Lotus japonicus HOM05D003602 ORTHO05D236127 5.5e-06 57.4 85 45.9


User provided reference genes

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