Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G33515 Trifolium pratense HOM05D005947 ORTHO05D007498 1.5e-184 649.4 347 100.0
Ca_20085_v3 Cicer arietinum L. HOM05D005947 ORTHO05D007498 1.6e-165 586.3 350 88.6
Medtr6g048300 Medicago truncatula HOM05D005947 ORTHO05D007498 3.9e-164 581.6 356 90.4
Psat0ss1860g0200 Pisum sativum HOM05D005947 ORTHO05D007498 4.5e-160 568.2 350 87.7
Lj2g0014936 Lotus japonicus HOM05D005947 ORTHO05D007498 4.8e-154 548.1 349 83.4
Glyma.16G179200 Glycine max HOM05D005947 ORTHO05D007498 5.8e-152 541.2 349 81.9
arahy.Tifrunner.gnm1.ann1.D9DNDH Arachis hypogaea HOM05D005947 ORTHO05D007498 1.3e-151 540.0 352 81.2
Lalb_Chr03g0034831 Lupinus albus HOM05D005947 ORTHO05D007498 3.2e-150 535.4 350 81.7
Glyma.09G132300 Glycine max HOM05D005947 ORTHO05D007498 7.1e-150 534.3 349 80.8
CANSAT21G1923 Cannabis sativa HOM05D005947 ORTHO05D007498 1.0e-148 530.4 344 81.1
Cpa.g.sc107.105 Carica papaya HOM05D005947 ORTHO05D007498 1.3e-148 530.0 334 83.2
Phvul.004G106800 Phaseolus vulgaris HOM05D005947 ORTHO05D007498 1.8e-148 529.6 347 81.3
Lalb_Chr01g0009481 Lupinus albus HOM05D005947 ORTHO05D007498 2.3e-148 529.3 350 80.9
Rhsim09G0200500 Rhododendron simsii HOM05D005947 ORTHO05D007498 2.3e-148 529.3 341 82.4
PGR042G2417 Punica granatum HOM05D005947 ORTHO05D007498 3.9e-148 528.5 349 79.9
Ciclev10005457m.g Citrus clementina HOM05D005947 ORTHO05D007498 8.7e-148 527.3 348 81.9
QL09p012952 Quercus lobata HOM05D005947 ORTHO05D007498 1.1e-147 526.9 354 80.5
VMungo0464G0961 Vigna mungo HOM05D005947 ORTHO05D007498 1.1e-147 526.9 346 81.2
MELO3C005838.2 Cucumis melo HOM05D005947 ORTHO05D007498 2.5e-147 525.8 317 86.1
CsaV3_5G001080 Cucumis sativus L. HOM05D005947 ORTHO05D007498 2.5e-147 525.8 317 86.1
Gohir.A08G098000 Gossypium hirsutum HOM05D005947 ORTHO05D007498 3.3e-147 525.4 310 88.1
Gohir.D08G109600 Gossypium hirsutum HOM05D005947 ORTHO05D007498 3.3e-147 525.4 310 88.1
Gorai.004G117300 Gossypium raimondii HOM05D005947 ORTHO05D007498 3.3e-147 525.4 310 88.1
Thecc.03G183900 Theobroma cacao HOM05D005947 ORTHO05D007498 3.3e-147 525.4 303 89.4
MD07G1278700 Malus domestica HOM05D005947 ORTHO05D007498 5.7e-147 524.6 348 79.9
arahy.Tifrunner.gnm1.ann1.4MV0VI Arachis hypogaea HOM05D005947 ORTHO05D007498 9.7e-147 523.9 345 80.9
vmacro09816 Vaccinium macrocarpon HOM05D005947 ORTHO05D007498 9.7e-147 523.9 327 84.7
TWI39G0764 Tripterygium wilfordii HOM05D005947 ORTHO05D007498 1.3e-146 523.5 317 86.4
Duzib205G0732 Durio zibethinus HOM05D005947 ORTHO05D007498 2.2e-146 522.7 309 87.1
Cfa016284 Carpinus fangiana HOM05D005947 ORTHO05D007498 2.8e-146 522.3 317 85.8
Haze_00040 Corylus avellana HOM05D005947 ORTHO05D007498 2.8e-146 522.3 317 85.8
SalBow4G2978 Salvia bowleyana HOM05D005947 ORTHO05D007498 2.8e-146 522.3 331 83.4
Eucgr.A02743 Eucalyptus grandis HOM05D005947 ORTHO05D007498 4.8e-146 521.5 304 88.2
Manes.14G022800 Manihot esculenta HOM05D005947 ORTHO05D007498 4.8e-146 521.5 349 79.9
Duzib084G0036 Durio zibethinus HOM05D005947 ORTHO05D007498 8.2e-146 520.8 348 80.7
Sed0018068 Sechium edule HOM05D005947 ORTHO05D007498 8.2e-146 520.8 308 86.4
MSTRG.8712 Avicennia marina HOM05D005947 ORTHO05D007498 1.1e-145 520.4 336 81.5
CARHR189560 Cardamine hirsuta HOM05D005947 ORTHO05D007498 1.1e-145 520.4 339 80.2
Hma1.2p1_0274F.1_g110170 Hydrangea macrophylla HOM05D005947 ORTHO05D007498 1.1e-145 520.4 360 78.6
Prupe.2G300600 Prunus persica HOM05D005947 ORTHO05D007498 1.4e-145 520.0 330 81.2
TAR375G0765 Trochodendron aralioides HOM05D005947 ORTHO05D007498 1.4e-145 520.0 304 87.2
unitig_37.g11971 Utricularia gibba HOM05D005947 ORTHO05D007498 1.4e-145 520.0 323 84.8
CiPaw.05G262900 Carya illinoinensis HOM05D005947 ORTHO05D007498 2.4e-145 519.2 329 83.6
TWI14G0750 Tripterygium wilfordii HOM05D005947 ORTHO05D007498 2.4e-145 519.2 304 88.5
ECA232G3749 Erigeron canadensis HOM05D005947 ORTHO05D007498 3.1e-145 518.8 317 84.9
Peaxi162Scf00444g00012 Petunia axillaris HOM05D005947 ORTHO05D007498 3.1e-145 518.8 330 83.3
Nitab4.5_0000084g0430 Nicotiana tabacum HOM05D005947 ORTHO05D007498 6.9e-145 517.7 314 86.0
THA.LOC104798913 Tarenaya hassleriana HOM05D005947 ORTHO05D007498 6.9e-145 517.7 347 81.6
Lsat_1_v5_gn_9_56500 Lactuca sativa HOM05D005947 ORTHO05D007498 9.0e-145 517.3 317 84.9
Nn6g33304 Nelumbo nucifera HOM05D005947 ORTHO05D007498 9.0e-145 517.3 350 78.9
Nitab4.5_0008851g0010 Nicotiana tabacum HOM05D005947 ORTHO05D007498 9.0e-145 517.3 301 88.4
Aqoxy7G00241 Aquilegia oxysepala HOM05D005947 ORTHO05D007498 1.2e-144 516.9 345 79.7
Potri.004G080100 Populus trichocarpa HOM05D005947 ORTHO05D007498 1.2e-144 516.9 350 79.4
Sed0027671 Sechium edule HOM05D005947 ORTHO05D007498 1.2e-144 516.9 313 84.7
Cc02_g02400 Coffea canephora HOM05D005947 ORTHO05D007498 1.5e-144 516.5 304 87.8
COL.COLO4_10059 Corchorus olitorius HOM05D005947 ORTHO05D007498 1.5e-144 516.5 352 79.5
Dinv28389 Davidia involucrata HOM05D005947 ORTHO05D007498 1.5e-144 516.5 338 81.1
BcaNung01201 Brassica carinata HOM05D005947 ORTHO05D007498 2.0e-144 516.2 331 81.3
Sp2g23290 Schrenkiella parvula HOM05D005947 ORTHO05D007498 2.0e-144 516.2 331 81.3
MSTRG.27089 Avicennia marina HOM05D005947 ORTHO05D007498 2.6e-144 515.8 304 87.8
BcaB04g19841 Brassica carinata HOM05D005947 ORTHO05D007498 2.6e-144 515.8 317 83.6
Solyc03g007980.1 Solanum lycopersicum HOM05D005947 ORTHO05D007498 2.6e-144 515.8 301 88.0
Sopen03g003920 Solanum pennellii HOM05D005947 ORTHO05D007498 2.6e-144 515.8 301 88.0
AL6G35340 Arabidopsis lyrata HOM05D005947 ORTHO05D007498 3.4e-144 515.4 339 79.6
CAN.G236.6 Capsicum annuum HOM05D005947 ORTHO05D007498 3.4e-144 515.4 301 88.0
PSO478G4027 Papaver somniferum HOM05D005947 ORTHO05D007498 3.4e-144 515.4 349 77.9
AT5G24020 Arabidopsis thaliana HOM05D005947 ORTHO05D007498 5.9e-144 514.6 339 79.6
Sabra04G0053200 Salix brachista HOM05D005947 ORTHO05D007498 5.9e-144 514.6 350 78.9
Atru.chr1.362 Acer truncatum HOM05D005947 ORTHO05D007498 1.3e-143 513.5 348 78.2
Thhalv10005713m.g Eutrema salsugineum HOM05D005947 ORTHO05D007498 1.3e-143 513.5 329 81.2
Lj1P1004T65 Lonicera japonica HOM05D005947 ORTHO05D007498 1.3e-143 513.5 319 84.3
PSO782G1988 Papaver somniferum HOM05D005947 ORTHO05D007498 1.3e-143 513.5 348 77.6
RcHm_v2.0_Chr1g0378251 Rosa chinensis HOM05D005947 ORTHO05D007498 1.3e-143 513.5 332 81.6
C07p43700 Brassica napus HOM05D005947 ORTHO05D007498 1.7e-143 513.1 349 78.5
BolC7t44900H Brassica oleracea HOM05D005947 ORTHO05D007498 1.7e-143 513.1 349 78.5
BraA06t26407Z Brassica rapa HOM05D005947 ORTHO05D007498 2.2e-143 512.7 304 86.5
ClCG01G000930 Citrullus lanatus HOM05D005947 ORTHO05D007498 2.2e-143 512.7 311 84.9
PGSC0003DMG400010127 Solanum tuberosum HOM05D005947 ORTHO05D007498 2.2e-143 512.7 343 79.6
A06p34800 Brassica napus HOM05D005947 ORTHO05D007498 2.9e-143 512.3 348 78.2
Dinv35250 Davidia involucrata HOM05D005947 ORTHO05D007498 2.9e-143 512.3 350 79.4
DCAR_010659 Daucus carota HOM05D005947 ORTHO05D007498 3.8e-143 511.9 336 81.2
Aa31LG11G3310 Aethionema arabicum HOM05D005947 ORTHO05D007498 5.0e-143 511.5 339 79.1
BcaNung01829 Brassica carinata HOM05D005947 ORTHO05D007498 5.0e-143 511.5 349 78.2
FAN03G2555 Fragaria x ananassa HOM05D005947 ORTHO05D007498 5.0e-143 511.5 350 79.1
AUR62031418 Chenopodium quinoa HOM05D005947 ORTHO05D007498 6.5e-143 511.1 313 84.3
Migut.F00295 Erythranthe guttata HOM05D005947 ORTHO05D007498 6.5e-143 511.1 299 88.3
FAN03G2880 Fragaria x ananassa HOM05D005947 ORTHO05D007498 1.1e-142 510.4 350 79.1
Carub.0006s2174 Capsella rubella HOM05D005947 ORTHO05D007498 1.4e-142 510.0 340 78.8
AUR62021126 Chenopodium quinoa HOM05D005947 ORTHO05D007498 1.4e-142 510.0 313 84.3
Aa31sc89G80 Aethionema arabicum HOM05D000041 ORTHO05D000061 1.9e-142 509.6 352 77.3
FAN01G2305 Fragaria x ananassa HOM05D005947 ORTHO05D007498 1.9e-142 509.6 349 78.2
FAN06G1268 Fragaria x ananassa HOM05D005947 ORTHO05D007498 1.9e-142 509.6 348 77.9
FAN10G0541 Fragaria x ananassa HOM05D005947 ORTHO05D007498 1.9e-142 509.6 349 78.2
FAN10G2124 Fragaria x ananassa HOM05D005947 ORTHO05D007498 1.9e-142 509.6 349 78.2
THA.LOC104814930 Tarenaya hassleriana HOM05D005947 ORTHO05D007498 1.9e-142 509.6 317 83.0
Sc19g0001250 Simmondsia chinensis HOM05D005947 ORTHO05D007498 7.2e-142 507.7 304 84.9
FvH4_7g30210 Fragaria vesca HOM05D005947 ORTHO05D007498 9.4e-142 507.3 348 77.6
FAN06G0215 Fragaria x ananassa HOM05D005947 ORTHO05D007498 9.4e-142 507.3 348 77.6
Nn1g01628 Nelumbo nucifera HOM05D005947 ORTHO05D007498 4.6e-141 505.0 302 84.4
CSS0033085 Camellia sinensis var. sinensis HOM05D005947 ORTHO05D007498 6.1e-141 504.6 295 87.1
CDE02G4387 Ceratophyllum demersum HOM05D005947 ORTHO05D007498 6.1e-141 504.6 327 80.7
Ah.07g206580 Amaranthus hybridus HOM05D005947 ORTHO05D007498 2.0e-139 499.6 304 84.2
TAR374G0782 Trochodendron aralioides HOM05D005947 ORTHO05D007498 9.7e-139 497.3 316 81.6
MBI11_g04748_MAGBIO Magnolia biondii HOM05D005947 ORTHO05D007498 1.4e-137 493.4 333 77.8
SGA_v2.0_scaffold60G21105 Striga asiatica HOM05D005947 ORTHO05D007498 1.4e-137 493.4 334 78.7
SEGI_04763 Sequoiadendron giganteum HOM05D005947 ORTHO05D007498 9.1e-137 490.7 307 79.5
Actinidia31839 Actinidia chinensis HOM05D005947 ORTHO05D007498 1.2e-136 490.3 329 79.6
AagrBONN_evm.TU.Sc2ySwM_368.3402 Anthoceros agrestis HOM05D005947 ORTHO05D007498 4.2e-134 481.9 306 80.1
SMO364G0223 Selaginella moellendorffii HOM05D005947 ORTHO05D007498 1.2e-133 480.3 331 75.2
CDE11G0334 Ceratophyllum demersum HOM05D005947 ORTHO05D007498 1.0e-132 477.2 291 84.5
Pp3c1_24820 Physcomitrium patens HOM05D005947 ORTHO05D007498 2.6e-131 472.6 305 77.0
Pp3c2_15820 Physcomitrium patens HOM05D005947 ORTHO05D007498 3.3e-131 472.2 305 76.7
ATR0661G312 Amborella trichopoda HOM05D005947 ORTHO05D007498 3.1e-129 465.7 305 77.0
Mapoly0042s0122 Marchantia polymorpha HOM05D005947 ORTHO05D007498 2.6e-115 419.5 265 80.0
Os06g0106000 Oryza sativa ssp. japonica HOM05D005947 ORTHO05D007498 1.7e-111 406.8 298 70.5
Zm00001eb268640 Zea mays HOM05D005947 ORTHO05D007498 5.2e-108 395.2 300 68.3
Oeu034005.1 Olea europaea HOM05D005947 ORTHO05D007498 2.4e-97 359.8 218 84.4
Cre12.g522950 Chlamydomonas reinhardtii HOM05D005947 ORTHO05D007498 2.5e-78 296.6 285 55.4
MCO05G507 Micromonas commoda HOM05D005947 ORTHO05D007498 3.6e-69 266.2 267 55.8
Cc04_g12430 Coffea canephora HOM05D005947 ORTHO05D007498 6.9e-52 208.8 112 92.0
Hund04783 Selenicereus undatus HOM05D005947 ORTHO05D007498 6.5e-42 175.6 97 92.8
Haze_27446 Corylus avellana HOM05D005947 ORTHO05D007498 1.4e-41 174.5 292 38.7
C06p34040 Brassica napus HOM05D005947 ORTHO05D007498 8.2e-21 105.5 63 84.1
MD15G1281600 Malus domestica HOM05D005947 ORTHO05D007498 2.3e-15 87.4 51 82.4
SGA_v2.0_scaffold3G01646 Striga asiatica HOM05D005947 ORTHO05D007498 1.7e-13 81.3 109 52.3
SGA_v2.0_scaffold32G13294 Striga asiatica HOM05D005947 ORTHO05D007498 2.2e-13 80.9 94 57.4
SGA_v2.0_scaffold89G27467 Striga asiatica HOM05D005947 ORTHO05D007498 4.8e-13 79.7 61 73.8
BcaC05g27523 Brassica carinata HOM05D005947 ORTHO05D007498 8.2e-13 79.0 68 60.3
Pp3c14_14070 Physcomitrium patens HOM05D005947 ORTHO05D007498 1.1e-12 78.6 113 47.8
SGA_v2.0_scaffold9G04983 Striga asiatica HOM05D007750 ORTHO05D009803 1.8e-12 77.8 71 70.4
Zm00001eb004860 Zea mays HOM05D005947 ORTHO05D007498 1.0e-10 72.0 107 45.8
BcaC04g23515 Brassica carinata HOM05D005947 ORTHO05D007498 1.7e-10 71.2 63 60.3
MCO11G317 Micromonas commoda HOM05D000809 ORTHO05D007735 2.0e-06 57.8 284 25.0
A08p14390 Brassica napus HOM05D000809 ORTHO05D007735 2.6e-06 57.4 274 22.3
CANSAT01G1378 Cannabis sativa HOM05D000809 ORTHO05D007735 4.4e-06 56.6 291 22.7
SGA_v2.0_scaffold138G35256 Striga asiatica HOM05D000809 ORTHO05D007735 4.4e-06 56.6 284 22.2
unitig_0.g148 Utricularia gibba HOM05D000809 ORTHO05D007735 4.4e-06 56.6 282 24.8
BraA01t01090Z Brassica rapa HOM05D000809 ORTHO05D007735 7.5e-06 55.8 274 21.9
Thhalv10025776m.g Eutrema salsugineum HOM05D000809 ORTHO05D007735 7.5e-06 55.8 274 22.3
PRCOL_00002169 Prasinoderma coloniale HOM05D000809 ORTHO05D007735 7.5e-06 55.8 280 26.4


User provided reference genes

Program Settings