Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G3350 Trifolium pratense HOM05D005023 ORTHO05D006009 2.8e-205 718.4 367 100.0
TPR.G14159 Trifolium pratense HOM05D005023 ORTHO05D006009 8.2e-120 434.5 245 91.4
Medtr8g066330 Medicago truncatula HOM05D005023 ORTHO05D006009 1.8e-106 390.2 242 82.6
Psat4g122680 Pisum sativum HOM05D005023 ORTHO05D006009 2.4e-103 379.8 244 79.1
Ca_22661_v3 Cicer arietinum L. HOM05D005023 ORTHO05D006009 4.5e-102 375.6 244 78.3
Lalb_Chr25g0286701 Lupinus albus HOM05D005023 ORTHO05D006009 2.8e-88 329.7 245 69.4
Lj6g0028231 Lotus japonicus HOM05D005023 ORTHO05D006009 6.3e-88 328.6 238 70.6
Psat4g122280 Pisum sativum HOM05D005023 ORTHO05D006009 6.3e-80 302.0 189 81.0
Phvul.009G009200 Phaseolus vulgaris HOM05D005023 ORTHO05D006009 5.5e-76 288.9 238 65.5
arahy.Tifrunner.gnm1.ann1.6CH5L4 Arachis hypogaea HOM05D005023 ORTHO05D006009 2.1e-75 287.0 242 62.4
arahy.Tifrunner.gnm1.ann1.NK2KWA Arachis hypogaea HOM05D005023 ORTHO05D006009 2.1e-75 287.0 242 62.4
arahy.Tifrunner.gnm1.ann1.J93PEP Arachis hypogaea HOM05D005023 ORTHO05D006009 3.4e-73 279.6 242 60.7
Glyma.06G013600 Glycine max HOM05D005023 ORTHO05D006009 1.7e-72 277.3 240 62.5
Glyma.04G013700 Glycine max HOM05D005023 ORTHO05D006009 2.4e-71 273.5 238 63.0
Cfa012488 Carpinus fangiana HOM05D005023 ORTHO05D006009 1.0e-58 231.5 251 50.6
QL12p004398 Quercus lobata HOM05D005023 ORTHO05D006009 1.4e-55 221.1 243 50.6
Haze_08177 Corylus avellana HOM05D005023 ORTHO05D006009 2.4e-55 220.3 228 50.9
arahy.Tifrunner.gnm1.ann1.GAHP45 Arachis hypogaea HOM05D005023 ORTHO05D006009 1.0e-53 214.9 193 58.5
RcHm_v2.0_Chr7g0211361 Rosa chinensis HOM05D005023 ORTHO05D006009 1.7e-53 214.2 245 49.0
CiPaw.11G096900 Carya illinoinensis HOM05D005023 ORTHO05D006009 9.5e-52 208.4 237 49.8
FAN04G1126 Fragaria x ananassa HOM05D005023 ORTHO05D006009 1.6e-51 207.6 244 49.2
FAN08G0704 Fragaria x ananassa HOM05D005023 ORTHO05D006009 2.1e-51 207.2 243 48.1
FvH4_5g22760 Fragaria vesca HOM05D005023 ORTHO05D006009 4.0e-50 203.0 243 47.3
FAN18G3597 Fragaria x ananassa HOM05D005023 ORTHO05D006009 4.0e-50 203.0 243 47.3
FAN13G2198 Fragaria x ananassa HOM05D005023 ORTHO05D006009 8.9e-50 201.8 243 46.9
FAN13G2978 Fragaria x ananassa HOM05D005023 ORTHO05D006009 8.9e-50 201.8 243 46.9
TWI60G0688 Tripterygium wilfordii HOM05D005023 ORTHO05D006009 8.9e-50 201.8 199 51.3
FAN18G4268 Fragaria x ananassa HOM05D005023 ORTHO05D006009 2.0e-49 200.7 243 46.9
Ciclev10016033m.g Citrus clementina HOM05D005023 ORTHO05D006009 2.6e-49 200.3 241 47.7
Potri.003G095200 Populus trichocarpa HOM05D005023 ORTHO05D006009 2.6e-49 200.3 246 45.5
Thecc.03G307500 Theobroma cacao HOM05D005023 ORTHO05D006009 3.4e-49 199.9 249 45.0
Prupe.5G030700 Prunus persica HOM05D005023 ORTHO05D006009 4.4e-49 199.5 251 45.0
COL.COLO4_16967 Corchorus olitorius HOM05D005023 ORTHO05D006009 1.3e-48 198.0 246 45.1
CANSAT54G0648 Cannabis sativa HOM05D005023 ORTHO05D006009 4.1e-47 193.0 234 46.6
MD06G1038100 Malus domestica HOM05D005023 ORTHO05D006009 9.2e-47 191.8 227 45.8
Dinv28986 Davidia involucrata HOM05D005023 ORTHO05D006009 1.2e-46 191.4 248 46.4
Atru.chr12.846 Acer truncatum HOM05D005023 ORTHO05D006009 7.8e-46 188.7 209 47.8
Aqoxy1G01584 Aquilegia oxysepala HOM05D005023 ORTHO05D006009 1.7e-45 187.6 208 48.1
Gohir.A12G206900 Gossypium hirsutum HOM05D005023 ORTHO05D006009 5.0e-45 186.0 195 50.8
Gohir.D12G209350 Gossypium hirsutum HOM05D005023 ORTHO05D006009 6.6e-45 185.7 195 51.3
Gorai.008G224900 Gossypium raimondii HOM05D005023 ORTHO05D006009 8.6e-45 185.3 195 51.3
Duzib084G0965 Durio zibethinus HOM05D005023 ORTHO05D006009 1.1e-44 184.9 223 47.1
Manes.02G223400 Manihot esculenta HOM05D005023 ORTHO05D006009 1.5e-44 184.5 239 44.8
PSO170G6706 Papaver somniferum HOM05D005023 ORTHO05D006009 1.6e-43 181.0 190 48.9
Cpa.g.sc90.15 Carica papaya HOM05D005023 ORTHO05D006009 3.6e-43 179.9 199 48.7
GSVIVG01013101001 Vitis vinifera HOM05D005023 ORTHO05D006009 6.2e-43 179.1 246 43.1
PSO302G0152 Papaver somniferum HOM05D005023 ORTHO05D006009 8.1e-43 178.7 243 42.8
Hma1.2p1_2161F.1_g315620 Hydrangea macrophylla HOM05D005023 ORTHO05D006009 1.4e-42 177.9 247 45.7
Sabra01G0107600 Salix brachista HOM05D005023 ORTHO05D006009 4.0e-42 176.4 213 47.4
Actinidia09175 Actinidia chinensis HOM05D005023 ORTHO05D006009 5.2e-42 176.0 243 42.4
DCAR_031128 Daucus carota HOM05D005023 ORTHO05D006009 5.2e-42 176.0 193 49.2
CSS0008599 Camellia sinensis var. sinensis HOM05D005023 ORTHO05D006009 8.9e-42 175.3 251 40.6
Actinidia25987 Actinidia chinensis HOM05D005023 ORTHO05D006009 1.2e-41 174.9 194 46.4
Sabra03G0064200 Salix brachista HOM05D005023 ORTHO05D006009 1.5e-41 174.5 141 61.0
Solyc08g076570.3 Solanum lycopersicum HOM05D005023 ORTHO05D006009 1.5e-41 174.5 193 51.3
AL8G11450 Arabidopsis lyrata HOM05D005023 ORTHO05D006009 2.0e-41 174.1 215 46.0
PGSC0003DMG400014810 Solanum tuberosum HOM05D005023 ORTHO05D006009 2.6e-41 173.7 193 51.3
PSO782G3892 Papaver somniferum HOM05D005023 ORTHO05D006009 5.8e-41 172.6 193 45.6
AUR62033976 Chenopodium quinoa HOM05D005023 ORTHO05D006009 7.5e-41 172.2 185 49.7
CAN.G298.60 Capsicum annuum HOM05D005023 ORTHO05D006009 1.7e-40 171.0 190 49.5
CAN.G298.61 Capsicum annuum HOM05D005023 ORTHO05D006009 1.7e-40 171.0 190 49.5
CAN.G726.32 Capsicum annuum HOM05D005023 ORTHO05D006009 1.7e-40 171.0 190 49.5
Sopen08g025130 Solanum pennellii HOM05D005023 ORTHO05D006009 2.2e-40 170.6 193 50.3
CARHR174600 Cardamine hirsuta HOM05D005023 ORTHO05D006009 4.9e-40 169.5 212 47.2
Ah.12g065340 Amaranthus hybridus HOM05D005023 ORTHO05D006009 6.4e-40 169.1 181 49.2
Peaxi162Scf00170g00918 Petunia axillaris HOM05D005023 ORTHO05D006009 6.4e-40 169.1 196 48.5
Nitab4.5_0000353g0050 Nicotiana tabacum HOM05D005023 ORTHO05D006009 8.3e-40 168.7 194 49.0
Nitab4.5_0004669g0010 Nicotiana tabacum HOM05D005023 ORTHO05D006009 8.3e-40 168.7 194 49.5
EL10Ac8g19220 Beta vulgaris HOM05D005023 ORTHO05D006009 1.9e-39 167.5 179 50.3
ClCG04G001320 Citrullus lanatus HOM05D005023 ORTHO05D006009 1.9e-39 167.5 240 42.1
Nitab4.5_0002380g0110 Nicotiana tabacum HOM05D005023 ORTHO05D006009 1.9e-39 167.5 192 48.4
Hund11209 Selenicereus undatus HOM05D005023 ORTHO05D006009 3.2e-39 166.8 186 50.0
ECA240G3323 Erigeron canadensis HOM05D005023 ORTHO05D006009 4.1e-39 166.4 179 46.9
Sp2g11650 Schrenkiella parvula HOM05D005023 ORTHO05D006009 4.1e-39 166.4 195 49.2
vmacro00304 Vaccinium macrocarpon HOM05D005023 ORTHO05D006009 7.1e-39 165.6 177 50.8
Lsat_1_v5_gn_6_80180 Lactuca sativa HOM05D005023 ORTHO05D006009 9.2e-39 165.2 258 37.2
Aa31sc182G50 Aethionema arabicum HOM05D005023 ORTHO05D006009 1.2e-38 164.9 226 45.1
CsaV3_1G033210 Cucumis sativus L. HOM05D000021 ORTHO05D000010 1.2e-38 164.9 240 40.4
Sed0002054 Sechium edule HOM05D005023 ORTHO05D006009 1.6e-38 164.5 242 39.7
AT5G46850 Arabidopsis thaliana HOM05D005023 ORTHO05D006009 2.7e-38 163.7 215 43.7
Eucgr.E00250 Eucalyptus grandis HOM05D005023 ORTHO05D006009 2.7e-38 163.7 221 40.7
Nitab4.5_0004839g0010 Nicotiana tabacum HOM05D005023 ORTHO05D006009 4.6e-38 162.9 192 47.4
SalBow6G6255 Salvia bowleyana HOM05D005023 ORTHO05D006009 4.6e-38 162.9 189 45.5
MSTRG.1995 Avicennia marina HOM05D005023 ORTHO05D006009 1.7e-37 161.0 189 48.1
SalBow6G3389 Salvia bowleyana HOM05D005023 ORTHO05D006009 1.7e-37 161.0 189 45.5
SalBow6G6031 Salvia bowleyana HOM05D005023 ORTHO05D006009 1.7e-37 161.0 189 45.5
SalBow6G2872 Salvia bowleyana HOM05D005023 ORTHO05D006009 2.3e-37 160.6 189 45.5
SalBow6G3524 Salvia bowleyana HOM05D005023 ORTHO05D006009 2.3e-37 160.6 189 45.5
SalBow6G4088 Salvia bowleyana HOM05D005023 ORTHO05D006009 2.3e-37 160.6 189 45.5
SalBow8G0269 Salvia bowleyana HOM05D005023 ORTHO05D006009 2.3e-37 160.6 189 44.4
SalBow6G4332 Salvia bowleyana HOM05D005023 ORTHO05D006009 3.0e-37 160.2 189 45.5
BcaC06g31439 Brassica carinata HOM05D005023 ORTHO05D006009 3.9e-37 159.8 226 42.9
SalBow6G3383 Salvia bowleyana HOM05D005023 ORTHO05D006009 3.9e-37 159.8 189 45.0
SalBow6G6227 Salvia bowleyana HOM05D005023 ORTHO05D006009 3.9e-37 159.8 189 45.0
HanXRQChr03g0083581 Helianthus annuus HOM05D005023 ORTHO05D006009 5.1e-37 159.5 182 44.5
PGR042G2438 Punica granatum HOM05D005023 ORTHO05D006009 5.1e-37 159.5 188 45.2
MBI02_g28332_MAGBIO Magnolia biondii HOM05D005023 ORTHO05D006009 6.6e-37 159.1 271 38.4
Carub.0008s0106 Capsella rubella HOM05D005023 ORTHO05D006009 8.6e-37 158.7 185 48.6
SalBow6G1717 Salvia bowleyana HOM05D005023 ORTHO05D006009 8.6e-37 158.7 189 45.0
A06p45570 Brassica napus HOM05D005023 ORTHO05D006009 1.1e-36 158.3 186 46.8
BraA06t27429Z Brassica rapa HOM05D005023 ORTHO05D006009 1.5e-36 157.9 224 42.0
BcaC06g34337 Brassica carinata HOM05D005023 ORTHO05D006009 1.9e-36 157.5 183 48.6
C07p30210 Brassica napus HOM05D005023 ORTHO05D006009 1.9e-36 157.5 183 48.6
BolC7t43557H Brassica oleracea HOM05D005023 ORTHO05D006009 1.9e-36 157.5 183 48.6
SalBow6G6846 Salvia bowleyana HOM05D005023 ORTHO05D006009 1.9e-36 157.5 189 45.5
THA.LOC104806696 Tarenaya hassleriana HOM05D005023 ORTHO05D006009 3.3e-36 156.8 226 42.5
Cc08_g03230 Coffea canephora HOM05D005023 ORTHO05D006009 4.3e-36 156.4 188 46.3
Thhalv10000976m.g Eutrema salsugineum HOM05D005023 ORTHO05D006009 5.6e-36 156.0 182 48.9
SGA_v2.0_scaffold6G03150 Striga asiatica HOM05D005023 ORTHO05D006009 5.6e-36 156.0 219 41.6
Lj2A234G45 Lonicera japonica HOM05D005023 ORTHO05D006009 3.6e-35 153.3 237 39.7
Rhsim07G0130800 Rhododendron simsii HOM05D005023 ORTHO05D006009 1.4e-34 151.4 240 40.8
Hma1.2p1_1594F.1_g292650 Hydrangea macrophylla HOM05D005023 ORTHO05D006009 2.4e-34 150.6 217 45.2
Migut.E00780 Erythranthe guttata HOM05D005023 ORTHO05D006009 4.0e-34 149.8 189 43.9
CDE02G4581 Ceratophyllum demersum HOM05D005023 ORTHO05D006009 1.2e-33 148.3 249 39.8
SalBow6G3781 Salvia bowleyana HOM05D005023 ORTHO05D006009 1.2e-33 148.3 176 46.6
PSO063G5178 Papaver somniferum HOM05D005023 ORTHO05D006009 3.4e-33 146.7 118 60.2
Sc01g0007280 Simmondsia chinensis HOM05D005023 ORTHO05D006009 3.4e-33 146.7 179 46.9
Os12g0596900 Oryza sativa ssp. japonica HOM05D005023 ORTHO05D006009 7.6e-33 145.6 216 41.2
Hma1.2p1_2161F.1_g315630 Hydrangea macrophylla HOM05D005023 ORTHO05D006009 6.4e-32 142.5 156 51.9
SalBow6G5471 Salvia bowleyana HOM05D005023 ORTHO05D006009 2.4e-31 140.6 182 42.3
SalBow6G0983 Salvia bowleyana HOM05D005023 ORTHO05D006009 4.1e-31 139.8 163 44.8
Zm00001eb030880 Zea mays HOM05D005023 ORTHO05D006009 9.2e-31 138.7 138 50.7
SalBow6G0969 Salvia bowleyana HOM05D005023 ORTHO05D006009 2.1e-30 137.5 163 44.8
SHI20240 Sapria himalayana HOM05D000452 ORTHO05D000647 2.7e-30 137.1 179 40.2
SalBow6G1311 Salvia bowleyana HOM05D005023 ORTHO05D006009 1.7e-29 134.4 163 44.2
unitig_21.g20893 Utricularia gibba HOM05D005023 ORTHO05D004745 2.3e-29 134.0 199 42.7
ATR0580G166 Amborella trichopoda HOM05D005237 ORTHO05D006189 8.7e-29 132.1 138 45.7
Nn7g38116 Nelumbo nucifera HOM05D005023 ORTHO05D006009 1.6e-27 127.9 267 33.7
HPP92_014902 Vanilla planifolia HOM05D005023 ORTHO05D006009 1.2e-25 121.7 201 36.3
HPP92_014897 Vanilla planifolia HOM05D005023 ORTHO05D006009 2.0e-25 120.9 201 37.3
Hma1.2p1_0572F.1_g181170 Hydrangea macrophylla HOM05D005023 ORTHO05D006009 1.7e-24 117.9 128 53.1
MELO3C033076.2 Cucumis melo HOM05D005023 ORTHO05D006009 3.9e-21 106.7 187 36.9
SalBow6G6268 Salvia bowleyana HOM05D005023 ORTHO05D006009 5.6e-20 102.8 108 51.9
Solyc08g076550.3 Solanum lycopersicum HOM05D005023 ORTHO05D006009 6.9e-18 95.9 117 47.0
Actinidia09177 Actinidia chinensis HOM05D005023 ORTHO05D006009 1.5e-17 94.7 124 43.5
SMO358G0075 Selaginella moellendorffii HOM05D005023 ORTHO05D006009 1.5e-17 94.7 159 33.3
Mapoly0088s0063 Marchantia polymorpha HOM05D005023 ORTHO05D006009 9.9e-17 92.0 141 35.5
SalBow6G0951 Salvia bowleyana HOM05D005023 ORTHO05D006009 8.4e-16 89.0 82 54.9
Pp3c13_7870 Physcomitrium patens HOM05D005023 ORTHO05D006009 1.0e-13 82.0 208 30.3
MELO3C011047.2 Cucumis melo HOM05D005023 ORTHO05D006009 3.3e-12 77.0 101 39.6
TAR375G0008 Trochodendron aralioides HOM05D005023 ORTHO05D006009 2.8e-11 73.9 211 29.9
SEGI_33873 Sequoiadendron giganteum HOM05D005023 ORTHO05D006009 6.0e-06 56.2 71 39.4


User provided reference genes

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