Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G3346 Trifolium pratense HOM05D005250 ORTHO05D006342 1.6e-158 562.8 296 100.0
Medtr8g066180 Medicago truncatula HOM05D005250 ORTHO05D006342 8.0e-150 533.9 296 93.6
Psat4g092800 Pisum sativum HOM05D005250 ORTHO05D006342 2.4e-146 522.3 296 92.2
Ca_22871_v3 Cicer arietinum L. HOM05D005250 ORTHO05D006342 7.0e-146 520.8 297 91.6
Psat4g118880 Pisum sativum HOM05D005250 ORTHO05D006342 4.0e-141 505.0 296 89.9
Lalb_Chr16g0391841 Lupinus albus HOM05D005250 ORTHO05D006342 2.0e-132 476.1 298 84.2
arahy.Tifrunner.gnm1.ann1.78R55B Arachis hypogaea HOM05D005250 ORTHO05D006342 2.6e-132 475.7 299 83.3
arahy.Tifrunner.gnm1.ann1.F58IRU Arachis hypogaea HOM05D005250 ORTHO05D006342 3.1e-130 468.8 306 81.4
Phvul.003G280700 Phaseolus vulgaris HOM05D005250 ORTHO05D006342 9.2e-130 467.2 289 84.1
Lj2g0021011 Lotus japonicus HOM05D005250 ORTHO05D006342 4.5e-129 464.9 298 82.2
Glyma.11G011400 Glycine max HOM05D005250 ORTHO05D006342 2.3e-128 462.6 286 83.9
TWI79G0919 Tripterygium wilfordii HOM05D005250 ORTHO05D006342 5.4e-122 441.4 292 76.4
Sed0024712 Sechium edule HOM05D005250 ORTHO05D006342 7.0e-122 441.0 292 77.1
Manes.01G024400 Manihot esculenta HOM05D005250 ORTHO05D006342 1.2e-121 440.3 289 77.9
MD16G1056000 Malus domestica HOM05D005250 ORTHO05D006342 1.7e-120 436.4 288 77.8
CiPaw.06G094800 Carya illinoinensis HOM05D005250 ORTHO05D006342 2.8e-118 429.1 292 76.0
RcHm_v2.0_Chr4g0437361 Rosa chinensis HOM05D005250 ORTHO05D006342 2.8e-118 429.1 288 75.7
FAN12G3515 Fragaria x ananassa HOM05D005250 ORTHO05D006342 1.8e-117 426.4 273 78.4
PGSC0003DMG400001920 Solanum tuberosum HOM05D005250 ORTHO05D006342 8.9e-117 424.1 275 78.2
Sed0000568 Sechium edule HOM05D005250 ORTHO05D006342 1.5e-116 423.3 285 77.5
CsaV3_6G033890 Cucumis sativus L. HOM05D005250 ORTHO05D006342 2.6e-116 422.5 282 78.4
FAN22G1621 Fragaria x ananassa HOM05D000202 ORTHO05D006342 1.3e-115 420.2 273 78.0
Sopen04g001290 Solanum pennellii HOM05D005250 ORTHO05D006342 2.2e-115 419.5 284 74.3
CAN.G263.5 Capsicum annuum HOM05D005250 ORTHO05D006342 2.9e-115 419.1 287 74.6
TAR623G0863 Trochodendron aralioides HOM05D005250 ORTHO05D006342 3.7e-115 418.7 292 74.3
Ah.02g126720 Amaranthus hybridus HOM05D005250 ORTHO05D006342 4.9e-115 418.3 291 72.9
Prupe.1G293300 Prunus persica HOM05D005250 ORTHO05D006342 4.9e-115 418.3 244 83.6
PGR119G1921 Punica granatum HOM05D005250 ORTHO05D006342 8.3e-115 417.5 296 76.0
FAN17G2738 Fragaria x ananassa HOM05D000202 ORTHO05D006342 1.9e-114 416.4 266 78.9
FvH4_4g29320 Fragaria vesca HOM05D005250 ORTHO05D006342 9.2e-114 414.1 244 83.2
Atru.chr11.1561 Acer truncatum HOM05D005250 ORTHO05D006342 3.5e-113 412.1 294 73.1
Actinidia13405 Actinidia chinensis HOM05D005250 ORTHO05D006342 4.6e-113 411.8 279 75.3
GSVIVG01010104001 Vitis vinifera HOM05D005250 ORTHO05D006342 1.3e-112 410.2 277 76.5
Nn7g36775 Nelumbo nucifera HOM05D005250 ORTHO05D006342 1.7e-112 409.8 292 71.9
Gohir.A03G106400 Gossypium hirsutum HOM05D005250 ORTHO05D006342 1.1e-111 407.1 299 71.2
HanXRQChr12g0365051 Helianthus annuus HOM05D005250 ORTHO05D006342 1.5e-111 406.8 296 72.0
MELO3C011403.2 Cucumis melo HOM05D005250 ORTHO05D006342 5.6e-111 404.8 240 85.0
Gorai.005G147500 Gossypium raimondii HOM05D005250 ORTHO05D006342 8.1e-110 401.0 304 69.7
Cc11_g11570 Coffea canephora HOM05D005250 ORTHO05D006342 1.1e-109 400.6 305 69.2
EL10Ac6g14674 Beta vulgaris HOM05D005250 ORTHO05D006342 1.4e-109 400.2 312 67.3
BcaC04g21447 Brassica carinata HOM05D005250 ORTHO05D006342 1.8e-109 399.8 294 71.4
Nitab4.5_0000591g0010 Nicotiana tabacum HOM05D005250 ORTHO05D006342 2.3e-109 399.4 295 70.8
COL.COLO4_27807 Corchorus olitorius HOM05D005250 ORTHO05D002390 4.0e-109 398.7 279 73.8
Ciclev10032293m.g Citrus clementina HOM05D005250 ORTHO05D006342 5.2e-109 398.3 293 71.3
Thhalv10004726m.g Eutrema salsugineum HOM05D005250 ORTHO05D006342 6.8e-109 397.9 291 71.1
BcaB07g30645 Brassica carinata HOM05D005250 ORTHO05D006342 1.2e-108 397.1 294 71.4
Hma1.2p1_0473F.1_g160080 Hydrangea macrophylla HOM05D005250 ORTHO05D006342 1.2e-108 397.1 269 74.7
MD13G1056700 Malus domestica HOM05D005250 ORTHO05D006342 1.2e-108 397.1 242 81.4
PSO384G2373 Papaver somniferum HOM05D005250 ORTHO05D006342 1.5e-108 396.7 283 71.4
PSO339G6010 Papaver somniferum HOM05D005250 ORTHO05D006342 2.6e-108 396.0 291 71.1
C09p31650 Brassica napus HOM05D005250 ORTHO05D006342 3.4e-108 395.6 289 72.0
Lj3A1027G83 Lonicera japonica HOM05D005250 ORTHO05D006342 4.4e-108 395.2 267 76.0
Rhsim09G0122300 Rhododendron simsii HOM05D005250 ORTHO05D006342 4.4e-108 395.2 311 68.2
Lsat_1_v5_gn_8_35661 Lactuca sativa HOM05D005250 ORTHO05D006342 9.8e-108 394.0 294 70.4
AUR62003059 Chenopodium quinoa HOM05D005250 ORTHO05D006342 2.2e-107 392.9 310 65.5
Sc11g0002640 Simmondsia chinensis HOM05D005250 ORTHO05D006342 2.2e-107 392.9 292 71.2
A09p24730 Brassica napus HOM05D005250 ORTHO05D000117 3.7e-107 392.1 289 71.6
SGA_v2.0_scaffold36G14486 Striga asiatica HOM05D005250 ORTHO05D006342 3.7e-107 392.1 306 69.0
AL5G13570 Arabidopsis lyrata HOM05D005250 ORTHO05D006342 4.9e-107 391.7 296 68.6
CARHR146190 Cardamine hirsuta HOM05D005250 ORTHO05D006342 4.9e-107 391.7 298 69.5
Duzib251G0604 Durio zibethinus HOM05D005250 ORTHO05D006342 6.4e-107 391.3 294 72.4
Sp2g14610 Schrenkiella parvula HOM05D005250 ORTHO05D006342 8.3e-107 391.0 293 69.6
Carub.0005s0293 Capsella rubella HOM05D005250 ORTHO05D006342 1.1e-106 390.6 293 68.9
BraA09t38059Z Brassica rapa HOM05D005250 ORTHO05D000117 2.4e-106 389.4 289 71.3
Thecc.02G322900 Theobroma cacao HOM05D005250 ORTHO05D006342 9.2e-106 387.5 301 69.4
SalBow2G3543 Salvia bowleyana HOM05D005250 ORTHO05D006342 1.2e-105 387.1 292 70.5
Migut.L01163 Erythranthe guttata HOM05D005250 ORTHO05D006342 1.0e-104 384.0 290 70.0
Hund25156 Selenicereus undatus HOM05D005250 ORTHO05D006342 1.0e-104 384.0 268 73.9
Potri.010G138300 Populus trichocarpa HOM05D005250 ORTHO05D006342 3.0e-104 382.5 277 72.9
CANSAT64G2789 Cannabis sativa HOM05D005250 ORTHO05D006342 3.9e-104 382.1 223 83.9
ECA233G0908 Erigeron canadensis HOM05D005250 ORTHO05D006342 6.6e-104 381.3 278 69.1
unitig_26.g10282 Utricularia gibba HOM05D005250 ORTHO05D006342 9.5e-103 377.5 296 65.2
ATR1096G147 Amborella trichopoda HOM05D005250 ORTHO05D006342 1.1e-101 374.0 281 68.3
ClCG08G010590 Citrullus lanatus HOM05D005250 ORTHO05D006342 1.4e-101 373.6 291 68.7
MBI19_g36132_MAGBIO Magnolia biondii HOM05D005250 ORTHO05D006342 1.4e-101 373.6 262 72.1
THA.LOC104805209 Tarenaya hassleriana HOM05D005250 ORTHO05D006342 1.4e-101 373.6 296 66.6
Eucgr.G02422 Eucalyptus grandis HOM05D005250 ORTHO05D006342 5.2e-101 371.7 286 69.2
MSTRG.778 Avicennia marina HOM05D005250 ORTHO05D006342 1.5e-100 370.2 277 69.7
CSS0000657 Camellia sinensis var. sinensis HOM05D005250 ORTHO05D006342 1.4e-98 363.6 223 82.1
arahy.Tifrunner.gnm1.ann1.LMD1JY Arachis hypogaea HOM05D005250 ORTHO05D006342 9.2e-98 360.9 278 70.5
Sabra10G0106500 Salix brachista HOM05D005250 ORTHO05D006342 2.1e-97 359.8 263 71.1
Os01g0265900 Oryza sativa ssp. japonica HOM05D005250 ORTHO05D006342 2.7e-97 359.4 255 71.8
Oeu048123.1 Olea europaea HOM05D005250 ORTHO05D006342 1.0e-96 357.5 289 66.4
Aa31LG2G6930 Aethionema arabicum HOM05D005250 ORTHO05D006342 2.3e-96 356.3 267 68.9
CDE02G4654 Ceratophyllum demersum HOM05D005250 ORTHO05D006342 6.6e-96 354.8 241 73.4
AUR62007874 Chenopodium quinoa HOM05D005250 ORTHO05D006342 4.3e-95 352.1 238 75.6
Haze_11860 Corylus avellana HOM05D005250 ORTHO05D006342 1.6e-94 350.1 302 63.6
Zm00001eb333230 Zea mays HOM05D005250 ORTHO05D006342 1.6e-94 350.1 289 65.7
BcaC04g19887 Brassica carinata HOM05D005250 ORTHO05D006342 2.1e-94 349.7 268 67.9
Aqoxy2G00415 Aquilegia oxysepala HOM05D005250 ORTHO05D006342 2.8e-94 349.4 321 62.0
BcaC06g35305 Brassica carinata HOM05D005250 ORTHO05D006342 2.2e-91 339.7 276 65.9
Nitab4.5_0000014g0530 Nicotiana tabacum HOM05D005250 ORTHO05D006342 1.4e-90 337.0 223 78.0
DCAR_007208 Daucus carota HOM05D005250 ORTHO05D006342 1.7e-88 330.1 223 74.4
Solyc04g005310.3 Solanum lycopersicum HOM05D005250 ORTHO05D006342 1.5e-87 327.0 196 82.7
Gohir.D02G131600 Gossypium hirsutum HOM05D005250 ORTHO05D006342 2.5e-87 326.2 198 82.8
vmacro10476 Vaccinium macrocarpon HOM05D005250 ORTHO05D006342 2.6e-84 316.2 362 52.2
MBI19_g20787_MAGBIO Magnolia biondii HOM05D005250 ORTHO05D006342 2.9e-83 312.8 291 59.8
AT2G03780 Arabidopsis thaliana HOM05D005250 ORTHO05D006342 1.9e-82 310.1 197 77.7
Peaxi162Scf00873g00111 Petunia axillaris HOM05D005250 ORTHO05D006342 1.2e-81 307.4 233 69.5
C04p21460 Brassica napus HOM05D005250 ORTHO05D006342 2.3e-80 303.1 299 58.9
Dinv34022 Davidia involucrata HOM05D005250 ORTHO05D006342 4.8e-78 295.4 172 83.1
BcaC09g49168 Brassica carinata HOM05D005250 ORTHO05D006342 2.4e-77 293.1 208 75.0
BolC4t23671H Brassica oleracea HOM05D005250 ORTHO05D006342 1.5e-76 290.4 371 49.6
SHI16015 Sapria himalayana HOM05D005250 ORTHO05D006342 1.5e-76 290.4 196 73.0
Hma1.2p1_1307F.1_g274740 Hydrangea macrophylla HOM05D005250 ORTHO05D006342 4.3e-71 272.3 176 77.3
HPP92_021194 Vanilla planifolia HOM05D005250 ORTHO05D006342 7.4e-71 271.6 275 53.8
EL10Ac8g19720 Beta vulgaris HOM05D005250 ORTHO05D006342 3.5e-65 252.7 225 61.8
arahy.Tifrunner.gnm1.ann1.M1Z73T Arachis hypogaea HOM05D005250 ORTHO05D006342 9.6e-63 244.6 199 66.3
Mapoly0009s0086 Marchantia polymorpha HOM05D005250 ORTHO05D006342 2.9e-59 233.0 240 50.0
C07p17630 Brassica napus HOM05D005250 ORTHO05D006342 9.3e-58 228.0 306 48.4
AagrBONN_evm.TU.Sc2ySwM_117.326 Anthoceros agrestis HOM05D005250 ORTHO05D006342 3.9e-56 222.6 214 51.4
SMO236G0018 Selaginella moellendorffii HOM05D005250 ORTHO05D006342 2.5e-55 219.9 240 47.5
SEGI_07586 Sequoiadendron giganteum HOM05D005250 ORTHO05D006342 2.3e-48 196.8 167 59.3
BolC9t57871H Brassica oleracea HOM05D005250 ORTHO05D006342 4.7e-41 172.6 275 44.0
Hma1.2p1_0473F.1_g160070 Hydrangea macrophylla HOM05D005250 ORTHO05D006342 6.7e-40 168.7 141 64.5
Hma1.2p1_0473F.1_g160090 Hydrangea macrophylla HOM05D005250 ORTHO05D006342 4.2e-34 149.4 91 79.1
A07p01490 Brassica napus HOM05D005250 ORTHO05D006342 4.0e-32 142.9 150 57.3
BraA04t18025Z Brassica rapa HOM05D005250 ORTHO05D006342 2.8e-30 136.7 117 64.1
C09p61860 Brassica napus HOM05D005250 ORTHO05D006342 4.1e-29 132.9 150 54.0
A05p26370 Brassica napus HOM05D005250 ORTHO05D006342 1.6e-25 120.9 150 50.0
PGSC0003DMG400008670 Solanum tuberosum HOM05D005250 ORTHO05D006342 4.4e-23 112.8 78 69.2
Aa31LG5G22420 Aethionema arabicum HOM05D001647 ORTHO05D001191 7.5e-23 112.1 148 48.6
A03p09860 Brassica napus HOM05D001868 ORTHO05D003985 2.8e-22 110.2 73 80.8
SEGI_14635 Sequoiadendron giganteum HOM05D005250 ORTHO05D006342 8.3e-22 108.6 170 39.4
CBR_g489 Chara braunii HOM05D000019 ORTHO05D000048 1.4e-21 107.8 92 54.3
Glyma.01G228600 Glycine max HOM05D005250 ORTHO05D006342 3.8e-19 99.8 51 92.2
BolC7t42269H Brassica oleracea HOM05D005250 ORTHO05D006342 6.5e-19 99.0 309 31.1
C07p34180 Brassica napus HOM05D005250 ORTHO05D006342 1.5e-18 97.8 198 38.4
C08p18960 Brassica napus HOM05D005250 ORTHO05D006342 1.5e-18 97.8 82 64.6
RcHm_v2.0_Chr3g0459601 Rosa chinensis HOM05D005250 ORTHO05D006342 3.2e-18 96.7 59 79.7
RcHm_v2.0_Chr3g0459611 Rosa chinensis HOM05D005250 ORTHO05D006342 5.5e-18 95.9 57 77.2
BolC7t43944H Brassica oleracea HOM05D005250 ORTHO05D006342 7.2e-18 95.5 198 36.9
BcaB07g30653 Brassica carinata HOM05D005250 ORTHO05D006342 8.0e-17 92.0 55 78.2
BcaB07g30654 Brassica carinata HOM05D005250 ORTHO05D006342 8.0e-17 92.0 55 78.2
Cfa027242 Carpinus fangiana HOM05D005250 ORTHO05D006342 3.4e-15 86.7 231 29.9
SGA_v2.0_scaffold139G35371 Striga asiatica HOM05D005250 ORTHO05D006342 5.7e-15 85.9 110 46.4
Ah.03g138620 Amaranthus hybridus HOM05D005250 ORTHO05D006342 2.8e-14 83.6 50 76.0
SGA_v2.0_scaffold32G13106 Striga asiatica HOM05D005250 ORTHO05D006342 6.3e-14 82.4 89 52.8
BcaC03g14881 Brassica carinata HOM05D022129 ORTHO05D027289 8.3e-14 82.0 102 50.0
A03p09870 Brassica napus HOM05D005250 ORTHO05D006342 5.4e-13 79.3 92 52.2
BcaB07g30647 Brassica carinata HOM05D005250 ORTHO05D006342 3.5e-12 76.6 56 69.6
SEGI_39770 Sequoiadendron giganteum HOM05D005250 ORTHO05D006342 1.7e-11 74.3 59 54.2
A02p10340 Brassica napus HOM05D022129 ORTHO05D006342 3.8e-11 73.2 93 49.5
SEGI_17465 Sequoiadendron giganteum HOM05D005250 ORTHO05D006342 1.8e-08 64.3 40 77.5
PRCOL_00004570 Prasinoderma coloniale HOM05D006384 ORTHO05D007917 6.8e-08 62.4 208 23.1
CBR_g45408 Chara braunii HOM05D006384 ORTHO05D007917 1.5e-07 61.2 208 22.6


User provided reference genes

Program Settings