Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G33412 Trifolium pratense HOM05D004824 ORTHO05D003903 1.1e-263 913.7 871 100.0
TPR.G25583 Trifolium pratense HOM05D004824 ORTHO05D003903 1.3e-208 730.7 852 89.0
TPR.G33705 Trifolium pratense HOM05D002450 ORTHO05D002953 8.4e-115 419.1 721 75.7
TPR.G27632 Trifolium pratense HOM05D004824 ORTHO05D003903 3.7e-102 377.1 308 89.6
Medtr3g091500 Medicago truncatula HOM05D004824 ORTHO05D003903 6.5e-99 366.3 793 68.5
TPR.G4149 Trifolium pratense HOM05D004824 ORTHO05D003903 3.0e-64 251.1 247 56.3
Medtr7g011500 Medicago truncatula HOM05D004824 ORTHO05D003903 3.1e-61 241.1 248 56.5
TPR.G25560 Trifolium pratense HOM05D004824 ORTHO05D003903 1.0e-59 236.1 221 60.6
Psat3g199560 Pisum sativum HOM05D004824 ORTHO05D003903 5.6e-50 203.8 663 71.0
Ca_06791_v3 Cicer arietinum L. HOM05D004824 ORTHO05D003903 6.1e-49 200.3 213 55.9
Medtr7g011520 Medicago truncatula HOM05D004824 ORTHO05D003903 2.0e-44 185.3 583 63.5
Lj1g0019375 Lotus japonicus HOM05D004824 ORTHO05D003903 1.3e-38 166.0 313 44.4
Lj1g0015996 Lotus japonicus HOM05D000005 ORTHO05D000012 3.4e-31 141.4 224 40.6
Lj1g0000290 Lotus japonicus HOM05D004824 ORTHO05D003903 1.2e-28 132.9 217 39.2
SalBow7G1004 Salvia bowleyana HOM05D004824 ORTHO05D003903 3.5e-28 131.3 223 35.0
Ciclev10011094m.g Citrus clementina HOM05D004824 ORTHO05D003903 2.3e-27 128.6 195 40.0
Lalb_Chr10g0093361 Lupinus albus HOM05D004824 ORTHO05D003903 5.1e-27 127.5 221 39.4
arahy.Tifrunner.gnm1.ann1.SR7DDI Arachis hypogaea HOM05D004824 ORTHO05D003903 6.6e-27 127.1 243 37.9
Cpa.g.sc743.5 Carica papaya HOM05D004824 ORTHO05D003903 4.3e-26 124.4 194 36.6
Migut.D01549 Erythranthe guttata HOM05D004824 ORTHO05D003903 7.3e-26 123.6 220 35.0
Peaxi162Scf00222g00211 Petunia axillaris HOM05D004824 ORTHO05D003903 7.3e-26 123.6 184 38.0
Carub.0004s0722 Capsella rubella HOM05D004824 ORTHO05D003903 9.5e-26 123.2 210 37.1
Aa31LG5G8990 Aethionema arabicum HOM05D004824 ORTHO05D003903 1.6e-25 122.5 224 34.4
Lsat_1_v5_gn_8_33440 Lactuca sativa HOM05D004824 ORTHO05D003903 2.1e-25 122.1 255 29.8
Glyma.05G060900 Glycine max HOM05D004824 ORTHO05D003903 3.1e-24 118.2 213 39.0
Phvul.008G038900 Phaseolus vulgaris HOM05D004824 ORTHO05D003903 3.1e-24 118.2 208 38.5
BolC4t23963H Brassica oleracea HOM05D004824 ORTHO05D003903 5.2e-24 117.5 228 34.6
Sp4g08720 Schrenkiella parvula HOM05D004824 ORTHO05D003903 5.2e-24 117.5 206 37.4
arahy.Tifrunner.gnm1.ann1.X6IIW5 Arachis hypogaea HOM05D004824 ORTHO05D003903 8.9e-24 116.7 230 36.5
BcaC02g10842 Brassica carinata HOM05D004824 ORTHO05D003903 8.9e-24 116.7 228 34.6
Thhalv10001906m.g Eutrema salsugineum HOM05D004824 ORTHO05D003903 8.9e-24 116.7 206 35.4
CAN.G964.21 Capsicum annuum HOM05D004824 ORTHO05D003903 1.2e-23 116.3 231 35.5
C04p24590 Brassica napus HOM05D004824 ORTHO05D003903 1.5e-23 115.9 228 34.6
arahy.Tifrunner.gnm1.ann1.XC7PBP Arachis hypogaea HOM05D004824 ORTHO05D003903 3.4e-23 114.8 259 34.4
AL4G19980 Arabidopsis lyrata HOM05D004824 ORTHO05D003903 9.9e-23 113.2 253 31.2
BraA07t29506Z Brassica rapa HOM05D004824 ORTHO05D003903 1.7e-22 112.5 235 31.9
A07p17870 Brassica napus HOM05D004824 ORTHO05D003903 2.2e-22 112.1 222 33.3
vmacro09539 Vaccinium macrocarpon HOM05D004824 ORTHO05D003903 3.8e-22 111.3 220 33.6
TWI79G0695 Tripterygium wilfordii HOM05D004824 ORTHO05D003903 4.9e-22 110.9 191 39.3
FAN25G3679 Fragaria x ananassa HOM05D004824 ORTHO05D003903 1.4e-21 109.4 196 32.7
Rhsim04G0218500 Rhododendron simsii HOM05D004824 ORTHO05D003903 1.4e-21 109.4 196 35.2
Solyc05g012920.3 Solanum lycopersicum HOM05D004824 ORTHO05D003903 1.4e-21 109.4 171 38.0
VMungo1383G0602 Vigna mungo HOM05D004824 ORTHO05D003903 1.9e-21 109.0 190 36.3
AT2G26790 Arabidopsis thaliana HOM05D004824 ORTHO05D003903 4.1e-21 107.8 251 31.5
THA.LOC104816942 Tarenaya hassleriana HOM05D004824 ORTHO05D003903 4.1e-21 107.8 203 30.5
vmacro04677 Vaccinium macrocarpon HOM05D004824 ORTHO05D003903 5.4e-21 107.5 221 34.8
VMungo0251G2839 Vigna mungo HOM05D004824 ORTHO05D003903 5.4e-21 107.5 189 37.6
ClCG06G012000 Citrullus lanatus HOM05D004824 ORTHO05D003903 9.2e-21 106.7 175 35.4
Dinv16084 Davidia involucrata HOM05D004824 ORTHO05D003903 9.2e-21 106.7 217 34.6
Glyma.07G217750 Glycine max HOM05D004824 ORTHO05D003903 1.6e-20 105.9 187 39.6
Thecc.01G121800 Theobroma cacao HOM05D004824 ORTHO05D003903 1.6e-20 105.9 174 37.9
MELO3C010266.2 Cucumis melo HOM05D004824 ORTHO05D003903 2.7e-20 105.1 173 35.8
Nitab4.5_0000391g0190 Nicotiana tabacum HOM05D004824 ORTHO05D003903 2.7e-20 105.1 222 32.4
Actinidia04364 Actinidia chinensis HOM05D004824 ORTHO05D003903 3.5e-20 104.8 161 38.5
Sopen05g007720 Solanum pennellii HOM05D004824 ORTHO05D003903 4.6e-20 104.4 230 33.5
Hund12341 Selenicereus undatus HOM05D004824 ORTHO05D003903 6.0e-20 104.0 186 34.4
CANSAT11G2445 Cannabis sativa HOM05D004824 ORTHO05D003903 7.8e-20 103.6 176 33.0
Sed0004559 Sechium edule HOM05D004824 ORTHO05D003903 1.3e-19 102.8 211 33.6
Sc12g0010940 Simmondsia chinensis HOM05D004824 ORTHO05D003903 1.3e-19 102.8 170 38.8
Gohir.A05G388900 Gossypium hirsutum HOM05D004824 ORTHO05D003903 1.7e-19 102.4 218 34.9
Hma1.2p1_0098F.1_g048160 Hydrangea macrophylla HOM05D004824 ORTHO05D003903 1.7e-19 102.4 242 33.5
CDE04G1389 Ceratophyllum demersum HOM05D004824 ORTHO05D003903 2.3e-19 102.1 196 34.7
RcHm_v2.0_Chr5g0022931 Rosa chinensis HOM05D004824 ORTHO05D003903 2.3e-19 102.1 177 33.9
Aqoxy1G00124 Aquilegia oxysepala HOM05D004824 ORTHO05D003903 3.0e-19 101.7 246 32.5
MD10G1219600 Malus domestica HOM05D004824 ORTHO05D003903 3.0e-19 101.7 212 34.0
FAN11G3130 Fragaria x ananassa HOM05D004824 ORTHO05D003903 3.9e-19 101.3 214 31.8
PGSC0003DMG400028391 Solanum tuberosum HOM05D004824 ORTHO05D003903 6.6e-19 100.5 225 33.3
FvH4_3g13690 Fragaria vesca HOM05D004824 ORTHO05D003903 8.6e-19 100.1 214 31.8
Gorai.012G030300 Gossypium raimondii HOM05D004824 ORTHO05D003903 8.6e-19 100.1 170 37.1
Rhsim04G0218400 Rhododendron simsii HOM05D004020 ORTHO05D004735 8.6e-19 100.1 165 35.8
PGR142G1633 Punica granatum HOM05D004824 ORTHO05D003903 1.1e-18 99.8 211 34.1
TAR623G1477 Trochodendron aralioides HOM05D004824 ORTHO05D003903 1.5e-18 99.4 165 33.9
CSS0029730 Camellia sinensis var. sinensis HOM05D004824 ORTHO05D003903 1.9e-18 99.0 157 37.6
CsaV3_1G028470 Cucumis sativus L. HOM05D004824 ORTHO05D003903 1.9e-18 99.0 214 32.7
CSS0000296 Camellia sinensis var. sinensis HOM05D004824 ORTHO05D003903 2.5e-18 98.6 157 37.6
EL10Ac8g19216 Beta vulgaris HOM05D004824 ORTHO05D003903 3.3e-18 98.2 204 32.8
Duzib147G0012 Durio zibethinus HOM05D004824 ORTHO05D003903 3.3e-18 98.2 215 31.6
Gohir.D04G027600 Gossypium hirsutum HOM05D004824 ORTHO05D003903 4.3e-18 97.8 214 34.1
DCAR_030408 Daucus carota HOM05D004824 ORTHO05D003903 7.3e-18 97.1 190 33.7
Manes.10G060400 Manihot esculenta HOM05D004824 ORTHO05D003903 9.6e-18 96.7 207 33.8
Gorai.N017300 Gossypium raimondii HOM05D004824 ORTHO05D003903 1.2e-17 96.3 214 34.1
MD05G1241200 Malus domestica HOM05D004824 ORTHO05D003903 1.6e-17 95.9 212 32.5
QL05p080937 Quercus lobata HOM05D004824 ORTHO05D003903 2.1e-17 95.5 197 33.5
Gohir.D04G027800 Gossypium hirsutum HOM05D004824 ORTHO05D003903 2.8e-17 95.1 214 33.6
VMungo0251G3577 Vigna mungo HOM05D004824 ORTHO05D003903 2.8e-17 95.1 242 29.8
Medtr1g113020 Medicago truncatula HOM05D004824 ORTHO05D003903 4.7e-17 94.4 93 67.7
FAN16G0917 Fragaria x ananassa HOM05D001160 ORTHO05D001092 6.2e-17 94.0 165 33.9
SHI24599 Sapria himalayana HOM05D008459 ORTHO05D003903 1.4e-16 92.8 245 31.4
Prupe.4G124300 Prunus persica HOM05D004824 ORTHO05D003903 1.8e-16 92.4 215 33.0
HanXRQChr17g0540701 Helianthus annuus HOM05D004824 ORTHO05D003903 2.4e-16 92.0 187 31.0
Ciclev10014253m.g Citrus clementina HOM05D004824 ORTHO05D003903 3.1e-16 91.7 175 33.7
CiPaw.15G110500 Carya illinoinensis HOM05D004824 ORTHO05D003903 5.2e-16 90.9 237 28.7
TWI63G0852 Tripterygium wilfordii HOM05D004824 ORTHO05D003903 1.2e-15 89.7 189 33.3
GSVIVG01015849001 Vitis vinifera HOM05D004824 ORTHO05D003903 1.2e-15 89.7 165 35.8
HanXRQChr12g0366191 Helianthus annuus HOM05D004824 ORTHO05D003903 3.4e-15 88.2 235 28.9
CARHR014190 Cardamine hirsuta HOM05D004824 ORTHO05D003903 4.4e-15 87.8 226 27.9
Cc02_g09320 Coffea canephora HOM05D004824 ORTHO05D003903 5.8e-15 87.4 159 34.6
MBI06_g07794_MAGBIO Magnolia biondii HOM05D004824 ORTHO05D003903 5.8e-15 87.4 237 32.9
MSTRG.2666 Avicennia marina HOM05D004824 ORTHO05D003903 7.6e-15 87.0 161 33.5
AL1G25600 Arabidopsis lyrata HOM05D004824 ORTHO05D003903 2.9e-14 85.1 223 27.4
Haze_18457 Corylus avellana HOM05D004824 ORTHO05D003903 4.9e-14 84.3 199 30.2
Aa31LG5G1800 Aethionema arabicum HOM05D004824 ORTHO05D007466 6.4e-14 84.0 225 28.0
CANSAT21G1575 Cannabis sativa HOM05D004824 ORTHO05D003903 6.4e-14 84.0 202 30.2
Nn2g15691 Nelumbo nucifera HOM05D004824 ORTHO05D003903 1.4e-13 82.8 159 35.2
CAN.G1642.5 Capsicum annuum HOM05D004824 ORTHO05D003903 1.9e-13 82.4 81 50.6
Psat3g199520 Pisum sativum HOM05D004824 ORTHO05D003903 2.4e-13 82.0 145 38.6
AT1G13800 Arabidopsis thaliana HOM05D004824 ORTHO05D003903 3.2e-13 81.6 276 23.9
ECA233G4957 Erigeron canadensis HOM05D004824 ORTHO05D003903 5.4e-13 80.9 143 31.5
HanXRQChr13g0425241 Helianthus annuus HOM05D004824 ORTHO05D003903 9.3e-13 80.1 229 28.4
Glyma.07G217800 Glycine max HOM05D004824 ORTHO05D003903 2.7e-12 78.6 59 57.6
Lsat_1_v5_gn_1_54320 Lactuca sativa HOM05D004824 ORTHO05D003903 4.6e-12 77.8 246 26.4
Manes.02G087700 Manihot esculenta HOM05D004824 ORTHO05D003903 4.6e-12 77.8 166 30.1
Nitab4.5_0008978g0030 Nicotiana tabacum HOM05D004824 ORTHO05D003903 6.0e-12 77.4 126 37.3
ECA246G3641 Erigeron canadensis HOM05D005906 ORTHO05D007359 1.7e-11 75.9 125 35.2
Lsat_1_v5_gn_0_9380 Lactuca sativa HOM05D004824 ORTHO05D003903 3.0e-11 75.1 227 31.7
Lsat_1_v5_gn_1_52160 Lactuca sativa HOM05D004824 ORTHO05D003903 1.1e-10 73.2 192 26.6
AUR62008612 Chenopodium quinoa HOM05D004824 ORTHO05D003903 1.1e-08 66.6 208 30.8
AUR62033969 Chenopodium quinoa HOM05D004824 ORTHO05D003903 1.8e-08 65.9 212 27.8
SHI28137 Sapria himalayana HOM05D008459 ORTHO05D003903 3.1e-08 65.1 148 28.4
ATR0807G095 Amborella trichopoda HOM05D004824 ORTHO05D003903 5.3e-08 64.3 226 27.4
SHI33202 Sapria himalayana HOM05D008459 ORTHO05D003903 5.3e-08 64.3 149 29.5
Ah.10g031450 Amaranthus hybridus HOM05D004824 ORTHO05D003903 9.0e-08 63.5 132 30.3
arahy.Tifrunner.gnm1.ann1.F7MB9I Arachis hypogaea HOM05D004824 ORTHO05D003903 2.0e-07 62.4 126 31.7
AUR62033164 Chenopodium quinoa HOM05D004824 ORTHO05D003903 4.5e-07 61.2 177 28.8
Haze_08182 Corylus avellana HOM05D007893 ORTHO05D010042 4.5e-07 61.2 179 24.0
Lsat_1_v5_gn_1_52140 Lactuca sativa HOM05D004824 ORTHO05D003903 4.5e-07 61.2 193 23.8
Oeu060442.1 Olea europaea HOM05D004824 ORTHO05D003903 9.9e-07 60.1 64 42.2
Cfa012483 Carpinus fangiana HOM05D007893 ORTHO05D010042 1.3e-06 59.7 176 23.3
ATR1127G166 Amborella trichopoda HOM05D007358 ORTHO05D009117 2.9e-06 58.5 184 27.7
Peaxi162Scf01229g00021 Petunia axillaris HOM05D007455 ORTHO05D009431 4.9e-06 57.8 87 36.8
Sabra04G0044400 Salix brachista HOM05D004824 ORTHO05D003903 6.4e-06 57.4 210 27.6


User provided reference genes

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