Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G3338 Trifolium pratense HOM05D004949 ORTHO05D006006 8.8e-73 276.9 148 100.0
Medtr8g066760 Medicago truncatula HOM05D004949 ORTHO05D006006 2.8e-63 245.4 146 88.4
Lj4g0000928 Lotus japonicus HOM05D004949 ORTHO05D006006 2.4e-54 215.7 147 77.6
Glyma.08G270900 Glycine max HOM05D004949 ORTHO05D006006 3.8e-52 208.4 148 78.4
Phvul.003G284400 Phaseolus vulgaris HOM05D004949 ORTHO05D006006 1.2e-50 203.4 147 74.8
VMungo1309G0709 Vigna mungo HOM05D004949 ORTHO05D006006 1.2e-48 196.8 147 72.1
VMungo0251G0718 Vigna mungo HOM05D004949 ORTHO05D006006 1.2e-40 170.2 129 71.3
Lalb_Chr05g0228811 Lupinus albus HOM05D004949 ORTHO05D006006 5.4e-38 161.4 136 71.3
Psat7g200760 Pisum sativum HOM05D004949 ORTHO05D006006 1.0e-36 157.1 92 89.1
Ca_14051_v3 Cicer arietinum L. HOM05D004949 ORTHO05D006006 1.7e-36 156.4 99 82.8
arahy.Tifrunner.gnm1.ann1.M3M86A Arachis hypogaea HOM05D004949 ORTHO05D006006 1.5e-35 153.3 143 60.1
arahy.Tifrunner.gnm1.ann1.78T75P Arachis hypogaea HOM05D004949 ORTHO05D006006 1.9e-35 152.9 143 60.1
Cfa012457 Carpinus fangiana HOM05D004949 ORTHO05D006006 2.7e-29 132.5 144 54.2
Prupe.5G033200 Prunus persica HOM05D004949 ORTHO05D006006 2.7e-29 132.5 136 52.9
MD06G1036200 Malus domestica HOM05D004949 ORTHO05D006006 4.6e-29 131.7 136 52.2
CsaV3_3G001560 Cucumis sativus L. HOM05D004949 ORTHO05D006006 1.3e-28 130.2 144 53.5
vmacro00318 Vaccinium macrocarpon HOM05D004949 ORTHO05D006006 3.9e-28 128.6 163 47.2
Haze_08210 Corylus avellana HOM05D004949 ORTHO05D006006 1.9e-27 126.3 144 52.1
FAN18G3647 Fragaria x ananassa HOM05D004949 ORTHO05D006006 1.9e-27 126.3 139 49.6
FvH4_5g22370 Fragaria vesca HOM05D004949 ORTHO05D006006 4.3e-27 125.2 139 48.9
Rhsim11G0048300 Rhododendron simsii HOM05D004949 ORTHO05D006006 5.6e-27 124.8 151 49.0
Actinidia25973 Actinidia chinensis HOM05D004949 ORTHO05D006006 7.3e-27 124.4 148 48.0
Thecc.03G225400 Theobroma cacao HOM05D004949 ORTHO05D006006 1.2e-26 123.6 147 52.4
RcHm_v2.0_Chr7g0210111 Rosa chinensis HOM05D004949 ORTHO05D006006 1.6e-26 123.2 140 50.0
COL.COLO4_17003 Corchorus olitorius HOM05D004949 ORTHO05D006006 2.1e-26 122.9 144 52.1
TAR375G0033 Trochodendron aralioides HOM05D004949 ORTHO05D006006 2.8e-26 122.5 150 49.3
QL12p004876 Quercus lobata HOM05D004949 ORTHO05D006006 4.7e-26 121.7 137 50.4
FAN13G2248 Fragaria x ananassa HOM05D004949 ORTHO05D006006 6.2e-26 121.3 139 47.5
Dinv28969 Davidia involucrata HOM05D004949 ORTHO05D006006 1.4e-25 120.2 147 50.3
Nn1g00131 Nelumbo nucifera HOM05D004949 ORTHO05D006006 1.4e-25 120.2 149 49.0
Sed0027872 Sechium edule HOM05D004949 ORTHO05D006006 4.0e-25 118.6 152 48.0
Eucgr.E00272 Eucalyptus grandis HOM05D004949 ORTHO05D006006 5.2e-25 118.2 143 46.9
GSVIVG01013143001 Vitis vinifera HOM05D004949 ORTHO05D006006 6.8e-25 117.9 146 51.4
CANSAT21G1226 Cannabis sativa HOM05D004949 ORTHO05D006006 1.3e-23 113.6 138 49.3
ECA233G0790 Erigeron canadensis HOM05D004949 ORTHO05D006006 1.7e-23 113.2 142 45.8
Aa31LG6G660 Aethionema arabicum HOM05D004949 ORTHO05D006006 2.2e-23 112.8 147 46.9
FAN18G2708 Fragaria x ananassa HOM05D004949 ORTHO05D006006 4.9e-23 111.7 145 45.5
Duzib068G0117 Durio zibethinus HOM05D004949 ORTHO05D006006 1.1e-22 110.5 141 48.9
Manes.17G017708 Manihot esculenta HOM05D004949 ORTHO05D006006 1.9e-22 109.8 146 47.3
PSO782G4101 Papaver somniferum HOM05D004949 ORTHO05D006006 1.9e-22 109.8 145 44.1
Hma1.2p1_0120F.1_g057130 Hydrangea macrophylla HOM05D004949 ORTHO05D006006 7.0e-22 107.8 138 47.1
AL7G36600 Arabidopsis lyrata HOM05D004949 ORTHO05D006006 9.2e-22 107.5 149 44.3
Potri.003G093300 Populus trichocarpa HOM05D004949 ORTHO05D006006 9.2e-22 107.5 146 47.3
HanXRQChr02g0049971 Helianthus annuus HOM05D004949 ORTHO05D006006 1.2e-21 107.1 139 45.3
Oeu048371.1 Olea europaea HOM05D004949 ORTHO05D006006 1.2e-21 107.1 137 48.9
CSS0006782 Camellia sinensis var. sinensis HOM05D004949 ORTHO05D006006 2.7e-21 105.9 133 46.6
PGR042G3443 Punica granatum HOM05D004949 ORTHO05D006006 2.7e-21 105.9 140 45.0
FAN04G2495 Fragaria x ananassa HOM05D004949 ORTHO05D006006 4.6e-21 105.1 145 42.8
CARHR224640 Cardamine hirsuta HOM05D004949 ORTHO05D006006 6.0e-21 104.8 150 46.0
ClCG10G001480 Citrullus lanatus HOM05D004949 ORTHO05D006006 6.0e-21 104.8 124 50.8
Atru.chr6.1656 Acer truncatum HOM05D004949 ORTHO05D006006 7.8e-21 104.4 141 48.2
CiPaw.12G064900 Carya illinoinensis HOM05D004949 ORTHO05D006006 7.8e-21 104.4 142 43.0
Ciclev10031452m.g Citrus clementina HOM05D004949 ORTHO05D006006 7.8e-21 104.4 140 45.7
Gohir.A09G031300 Gossypium hirsutum HOM05D004949 ORTHO05D006006 7.8e-21 104.4 139 46.8
Gohir.A03G000052 Gossypium hirsutum HOM05D004949 ORTHO05D006006 1.3e-20 103.6 139 46.8
MBI04_g33883_MAGBIO Magnolia biondii HOM05D004949 ORTHO05D006006 1.3e-20 103.6 153 43.8
CSS0020726 Camellia sinensis var. sinensis HOM05D004949 ORTHO05D006006 1.7e-20 103.2 133 46.6
Gohir.D03G172700 Gossypium hirsutum HOM05D004949 ORTHO05D006006 1.7e-20 103.2 139 46.0
Gorai.003G183400 Gossypium raimondii HOM05D004949 ORTHO05D006006 1.7e-20 103.2 139 46.0
PSO063G1669 Papaver somniferum HOM05D004949 ORTHO05D006006 1.7e-20 103.2 142 42.3
AUR62018700 Chenopodium quinoa HOM05D004949 ORTHO05D006006 3.0e-20 102.4 145 44.8
BcaB01g03270 Brassica carinata HOM05D004949 ORTHO05D006006 3.9e-20 102.1 143 45.5
Thhalv10001430m.g Eutrema salsugineum HOM05D004949 ORTHO05D006006 3.9e-20 102.1 143 44.1
Zm00001eb018410 Zea mays HOM05D004949 ORTHO05D006006 3.9e-20 102.1 148 43.2
BcaC01g05139 Brassica carinata HOM05D004949 ORTHO05D006006 6.6e-20 101.3 143 44.8
C03p30030 Brassica napus HOM05D004949 ORTHO05D006006 6.6e-20 101.3 143 44.8
BolC3t15350H Brassica oleracea HOM05D004949 ORTHO05D006006 6.6e-20 101.3 143 44.8
Carub.0007s2343 Capsella rubella HOM05D004949 ORTHO05D006006 6.6e-20 101.3 149 42.3
A03p25190 Brassica napus HOM05D004949 ORTHO05D006006 1.1e-19 100.5 146 45.9
Aqoxy3G00659 Aquilegia oxysepala HOM05D004949 ORTHO05D006006 1.5e-19 100.1 150 44.0
Aqoxy3G01363 Aquilegia oxysepala HOM05D004949 ORTHO05D006006 1.9e-19 99.8 150 44.0
BraA03t11719Z Brassica rapa HOM05D004949 ORTHO05D006006 2.5e-19 99.4 144 43.1
TPR.G40857 Trifolium pratense HOM05D004949 ORTHO05D006006 3.3e-19 99.0 51 98.0
Cc08_g02960 Coffea canephora HOM05D004949 ORTHO05D006006 9.5e-19 97.4 143 42.0
Os03g0378200 Oryza sativa ssp. japonica HOM05D004949 ORTHO05D006006 1.2e-18 97.1 140 47.1
Psat4g121520 Pisum sativum HOM05D004949 ORTHO05D006006 1.6e-18 96.7 57 87.7
CAN.G298.24 Capsicum annuum HOM05D004949 ORTHO05D006006 8.1e-18 94.4 141 41.1
MELO3C013842.2 Cucumis melo HOM05D004949 ORTHO05D006006 8.1e-18 94.4 151 43.0
SalBow8G0555 Salvia bowleyana HOM05D004949 ORTHO05D006006 8.1e-18 94.4 136 44.9
Sc01g0007370 Simmondsia chinensis HOM05D004949 ORTHO05D006006 1.1e-17 94.0 145 42.1
Solyc08g076810.4 Solanum lycopersicum HOM05D004949 ORTHO05D006006 2.3e-17 92.8 139 41.0
Sopen08g025330 Solanum pennellii HOM05D004949 ORTHO05D006006 2.3e-17 92.8 139 41.0
ATR0665G211 Amborella trichopoda HOM05D004949 ORTHO05D006006 4.0e-17 92.0 149 40.3
TWI15G0747 Tripterygium wilfordii HOM05D004949 ORTHO05D006006 8.9e-17 90.9 96 52.1
Migut.O00927 Erythranthe guttata HOM05D004949 ORTHO05D006006 3.4e-16 89.0 148 44.6
Lsat_1_v5_gn_6_4100 Lactuca sativa HOM05D004949 ORTHO05D006006 3.4e-16 89.0 136 41.2
SGA_v2.0_scaffold38G15014 Striga asiatica HOM05D004949 ORTHO05D006006 2.2e-15 86.3 136 44.1
SalBow6G3319 Salvia bowleyana HOM05D004949 ORTHO05D006006 6.4e-15 84.7 136 42.6
EL10Ac5g12089 Beta vulgaris HOM05D004949 ORTHO05D006006 1.4e-14 83.6 121 43.8
DCAR_028920 Daucus carota HOM05D004949 ORTHO05D006006 9.2e-14 80.9 132 40.2
Psat0ss26165g0120 Pisum sativum HOM05D004949 ORTHO05D006006 2.1e-10 69.7 37 91.9
Lj8A304G49 Lonicera japonica HOM05D004949 ORTHO05D006006 4.7e-10 68.6 90 43.3
SEGI_29978 Sequoiadendron giganteum HOM05D004949 ORTHO05D006006 8.1e-10 67.8 130 31.5
Pp3c15_10960 Physcomitrium patens HOM05D004949 ORTHO05D006006 1.1e-09 67.4 146 33.6
Peaxi162Scf00236g00034 Petunia axillaris HOM05D004949 ORTHO05D006006 1.2e-08 63.9 94 40.4
DCAR_008253 Daucus carota HOM05D004949 ORTHO05D006006 1.5e-08 63.5 91 41.8
Nitab4.5_0002773g0060 Nicotiana tabacum HOM05D004949 ORTHO05D006006 3.4e-08 62.4 131 32.8
Sp4g27350 Schrenkiella parvula HOM05D004949 ORTHO05D006006 9.9e-08 60.8 113 38.1
SMO351G0610 Selaginella moellendorffii HOM05D004949 ORTHO05D006006 1.7e-07 60.1 142 36.6
Sabra03G0062700 Salix brachista HOM05D004949 ORTHO05D006006 3.2e-06 55.8 108 36.1
THA.LOC104812834 Tarenaya hassleriana HOM05D004949 ORTHO05D006006 3.2e-06 55.8 81 48.1
Nitab4.5_0005651g0010 Nicotiana tabacum HOM05D004949 ORTHO05D006006 5.4e-06 55.1 125 31.2
Mapoly0029s0019 Marchantia polymorpha HOM05D004949 ORTHO05D006006 7.1e-06 54.7 124 33.9
Nitab4.5_0000711g0040 Nicotiana tabacum HOM05D004949 ORTHO05D006006 9.2e-06 54.3 113 31.9


User provided reference genes

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