Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G33257 Trifolium pratense HOM05D004054 ORTHO05D004945 0.0e+00 1623.2 832 100.0
Psat4g132120 Pisum sativum HOM05D004054 ORTHO05D004945 0.0e+00 1374.8 844 85.7
Ca_22853_v3 Cicer arietinum L. HOM05D004054 ORTHO05D004945 0.0e+00 1354.3 864 83.3
Medtr8g469270 Medicago truncatula HOM05D004054 ORTHO05D004945 0.0e+00 1351.7 844 85.1
Glyma.18G126000 Glycine max HOM05D004054 ORTHO05D004945 0.0e+00 1218.4 868 75.2
Lj4g0012636 Lotus japonicus HOM05D004054 ORTHO05D004945 0.0e+00 1212.6 865 76.0
Glyma.08G296300 Glycine max HOM05D004054 ORTHO05D004945 0.0e+00 1198.3 866 74.5
Phvul.003G069800 Phaseolus vulgaris HOM05D004054 ORTHO05D004945 0.0e+00 1182.2 870 72.9
VMungo0251G1664 Vigna mungo HOM05D004054 ORTHO05D004945 0.0e+00 1160.6 864 71.9
Lalb_Chr16g0392581 Lupinus albus HOM05D004054 ORTHO05D004945 0.0e+00 1120.1 881 70.5
arahy.Tifrunner.gnm1.ann1.K6PP8H Arachis hypogaea HOM05D004054 ORTHO05D004945 0.0e+00 1090.1 871 68.9
Lalb_Chr09g0335271 Lupinus albus HOM05D004054 ORTHO05D004945 1.2e-291 1006.5 811 69.3
Thecc.02G355300 Theobroma cacao HOM05D004054 ORTHO05D004945 6.3e-285 984.2 871 62.9
QL03p065666 Quercus lobata HOM05D004054 ORTHO05D004945 1.5e-283 979.5 883 62.6
Psat2g124400 Pisum sativum HOM05D004054 ORTHO05D004945 7.4e-278 960.7 861 61.2
Cfa009037 Carpinus fangiana HOM05D004054 ORTHO05D004945 1.4e-276 956.4 883 62.2
Prupe.1G267800 Prunus persica HOM05D004054 ORTHO05D004945 6.5e-274 947.6 871 62.0
MD13G1079000 Malus domestica HOM05D004054 ORTHO05D004945 2.1e-272 942.6 872 60.8
Ciclev10030693m.g Citrus clementina HOM05D004054 ORTHO05D004945 3.6e-272 941.8 883 60.5
TAR362G0462 Trochodendron aralioides HOM05D004054 ORTHO05D004945 6.1e-272 941.0 888 59.9
Duzib268G1532 Durio zibethinus HOM05D004054 ORTHO05D004945 2.6e-270 935.6 838 61.5
COL.COLO4_07923 Corchorus olitorius HOM05D004054 ORTHO05D004945 4.4e-270 934.9 828 62.0
Rhsim01G0215700 Rhododendron simsii HOM05D004054 ORTHO05D004945 5.7e-270 934.5 783 64.8
Glyma.02G021900 Glycine max HOM05D004054 ORTHO05D004945 7.4e-270 934.1 860 61.3
Ca_04741_v3 Cicer arietinum L. HOM05D004054 ORTHO05D004945 2.8e-269 932.2 844 61.6
RcHm_v2.0_Chr1g0353921 Rosa chinensis HOM05D004054 ORTHO05D004945 4.5e-267 924.9 839 60.7
Gohir.A13G052300 Gossypium hirsutum HOM05D004054 ORTHO05D004945 5.9e-267 924.5 842 60.3
Gorai.013G077900 Gossypium raimondii HOM05D004054 ORTHO05D004945 8.5e-266 920.6 834 60.8
MD16G1078700 Malus domestica HOM05D004054 ORTHO05D004945 8.5e-266 920.6 769 65.4
RcHm_v2.0_Chr4g0440641 Rosa chinensis HOM05D004054 ORTHO05D004945 1.1e-265 920.2 871 59.0
RcHm_v2.0_Chr1g0331881 Rosa chinensis HOM05D004054 ORTHO05D004945 5.5e-265 917.9 839 60.1
Medtr5g038440 Medicago truncatula HOM05D004054 ORTHO05D004945 7.2e-265 917.5 865 60.6
FAN12G3951 Fragaria x ananassa HOM05D004054 ORTHO05D004945 1.2e-264 916.8 873 59.1
FvH4_4g31960 Fragaria vesca HOM05D004054 ORTHO05D004945 2.7e-264 915.6 873 58.8
FAN17G1509 Fragaria x ananassa HOM05D004054 ORTHO05D004945 2.7e-264 915.6 872 59.1
GSVIVG01036940001 Vitis vinifera HOM05D004054 ORTHO05D004945 2.7e-264 915.6 876 58.9
FAN22G1878 Fragaria x ananassa HOM05D004054 ORTHO05D004945 6.1e-264 914.4 874 58.9
Haze_12066 Corylus avellana HOM05D004054 ORTHO05D004945 2.3e-263 912.5 985 55.7
Gohir.D13G068400 Gossypium hirsutum HOM05D004054 ORTHO05D004945 2.6e-262 909.1 834 60.2
FAN07G1439 Fragaria x ananassa HOM05D004054 ORTHO05D004945 9.7e-262 907.1 885 58.2
Actinidia05393 Actinidia chinensis HOM05D004054 ORTHO05D004945 1.7e-261 906.4 839 60.2
Potri.010G033900 Populus trichocarpa HOM05D004054 ORTHO05D004945 2.8e-261 905.6 862 60.6
CsaV3_5G032370 Cucumis sativus L. HOM05D004054 ORTHO05D004945 1.0e-258 897.1 891 57.8
Sed0026408 Sechium edule HOM05D004054 ORTHO05D004945 7.2e-257 891.0 884 57.7
ClCG05G024580 Citrullus lanatus HOM05D004054 ORTHO05D004945 2.7e-256 889.0 901 57.5
Duzib248G1634 Durio zibethinus HOM05D004054 ORTHO05D004945 6.7e-255 884.4 870 58.7
Atru.chr11.1851 Acer truncatum HOM05D004054 ORTHO05D004945 7.5e-254 880.9 892 58.9
Lalb_Chr17g0340361 Lupinus albus HOM05D004054 ORTHO05D004945 9.1e-252 874.0 803 61.1
TWI36G0714 Tripterygium wilfordii HOM05D004054 ORTHO05D004945 2.0e-251 872.8 881 57.4
Sabra10G0030700 Salix brachista HOM05D004054 ORTHO05D004945 1.0e-250 870.5 916 56.3
GSVIVG01020074001 Vitis vinifera HOM05D004054 ORTHO05D004945 3.8e-250 868.6 877 56.1
Lj2g0020807 Lotus japonicus HOM05D004054 ORTHO05D004945 8.0e-248 860.9 756 62.2
Gohir.D12G170300 Gossypium hirsutum HOM05D004054 ORTHO05D004945 1.4e-247 860.1 837 58.2
Gorai.008G182900 Gossypium raimondii HOM05D004054 ORTHO05D004945 1.8e-247 859.8 882 56.8
TPR.G13762 Trifolium pratense HOM05D004054 ORTHO05D004945 3.0e-247 859.0 794 60.3
PGR102G2139 Punica granatum HOM05D004054 ORTHO05D004945 1.2e-246 857.1 876 57.2
MBI11_g00106_MAGBIO Magnolia biondii HOM05D004054 ORTHO05D004945 7.5e-246 854.4 895 54.9
vmacro07429 Vaccinium macrocarpon HOM05D004054 ORTHO05D004945 7.5e-246 854.4 852 57.7
Hma1.2p1_1545F.1_g289900 Hydrangea macrophylla HOM05D004054 ORTHO05D004945 4.1e-244 848.6 757 62.6
MELO3C012068.2 Cucumis melo HOM05D004054 ORTHO05D004945 1.7e-242 843.2 866 55.5
Peaxi162Scf00209g00326 Petunia axillaris HOM05D004054 ORTHO05D004945 1.2e-240 837.0 900 54.0
Aqoxy5G00175 Aquilegia oxysepala HOM05D004054 ORTHO05D004945 1.6e-240 836.6 883 55.4
MBI17_g39912_MAGBIO Magnolia biondii HOM05D004054 ORTHO05D004945 2.1e-240 836.3 884 54.4
Thhalv10020058m.g Eutrema salsugineum HOM05D004054 ORTHO05D004945 2.8e-240 835.9 872 54.7
Sc11g0001680 Simmondsia chinensis HOM05D004054 ORTHO05D004945 3.6e-240 835.5 852 54.5
Manes.05G096500 Manihot esculenta HOM05D004054 ORTHO05D004945 5.2e-239 831.6 747 62.8
Sopen05g002990 Solanum pennellii HOM05D004054 ORTHO05D004945 5.2e-239 831.6 879 55.4
Dinv24955 Davidia involucrata HOM05D004054 ORTHO05D004945 8.9e-239 830.9 724 63.7
Carub.0003s1763 Capsella rubella HOM05D004054 ORTHO05D004945 1.5e-238 830.1 872 54.2
THA.LOC104820344 Tarenaya hassleriana HOM05D004054 ORTHO05D004945 5.7e-238 828.2 871 55.6
Eucgr.B03410 Eucalyptus grandis HOM05D004054 ORTHO05D004945 1.3e-237 827.0 878 54.8
CSS0048330 Camellia sinensis var. sinensis HOM05D004054 ORTHO05D004945 8.3e-237 824.3 865 55.1
Nitab4.5_0009649g0020 Nicotiana tabacum HOM05D004054 ORTHO05D004945 8.3e-237 824.3 843 56.3
AL3G31070 Arabidopsis lyrata HOM05D004054 ORTHO05D004945 5.4e-236 821.6 867 54.4
AT3G17900 Arabidopsis thaliana HOM05D004054 ORTHO05D004945 5.4e-236 821.6 873 54.1
Cc11_g13490 Coffea canephora HOM05D004054 ORTHO05D004945 3.5e-235 818.9 837 55.3
Sp3g16020 Schrenkiella parvula HOM05D004054 ORTHO05D004945 3.5e-235 818.9 876 53.4
PSO832G3945 Papaver somniferum HOM05D004054 ORTHO05D004945 2.3e-234 816.2 842 54.5
arahy.Tifrunner.gnm1.ann1.S53SYG Arachis hypogaea HOM05D004054 ORTHO05D004945 5.0e-234 815.1 853 55.6
Lsat_1_v5_gn_8_54080 Lactuca sativa HOM05D004054 ORTHO05D004945 1.5e-233 813.5 834 56.5
CARHR093230 Cardamine hirsuta HOM05D004054 ORTHO05D004945 6.1e-232 808.1 870 54.4
SGA_v2.0_scaffold302G47866 Striga asiatica HOM05D004054 ORTHO05D004945 5.2e-231 805.1 848 54.4
ECA247G4086 Erigeron canadensis HOM05D004054 ORTHO05D004945 4.4e-230 802.0 775 59.1
Migut.L01344 Erythranthe guttata HOM05D004054 ORTHO05D004945 7.5e-230 801.2 867 54.8
A01p36490 Brassica napus HOM05D004054 ORTHO05D004945 2.2e-229 799.7 875 52.2
BcaB04g20809 Brassica carinata HOM05D004054 ORTHO05D004945 8.3e-229 797.7 876 53.1
DCAR_027382 Daucus carota HOM05D004054 ORTHO05D004945 8.3e-229 797.7 868 53.5
Nitab4.5_0008717g0030 Nicotiana tabacum HOM05D004054 ORTHO05D004945 2.4e-228 796.2 844 55.5
Oeu011693.1 Olea europaea HOM05D004054 ORTHO05D004945 2.4e-228 796.2 768 58.9
Aa31LG8G4770 Aethionema arabicum HOM05D004054 ORTHO05D004945 9.2e-228 794.3 926 50.9
BraA03t13202Z Brassica rapa HOM05D004054 ORTHO05D004945 5.0e-226 788.5 871 53.0
C03p49280 Brassica napus HOM05D004054 ORTHO05D004945 4.3e-225 785.4 869 53.4
PSO764G0096 Papaver somniferum HOM05D004054 ORTHO05D004945 6.2e-224 781.6 846 52.6
MSTRG.671 Avicennia marina HOM05D004054 ORTHO05D004945 1.8e-223 780.0 873 53.2
SalBow2G0733 Salvia bowleyana HOM05D004054 ORTHO05D004945 2.3e-223 779.6 955 49.7
BolC3t17216H Brassica oleracea HOM05D004054 ORTHO05D004945 8.9e-223 777.7 826 54.2
Hund25271 Selenicereus undatus HOM05D004054 ORTHO05D004945 2.0e-222 776.5 804 54.1
HanXRQChr12g0369801 Helianthus annuus HOM05D004054 ORTHO05D004945 1.7e-221 773.5 819 56.5
AUR62026447 Chenopodium quinoa HOM05D004054 ORTHO05D004945 3.7e-221 772.3 846 53.2
BraA01t03713Z Brassica rapa HOM05D004054 ORTHO05D004945 7.8e-219 764.6 872 51.7
C01p46250 Brassica napus HOM05D004054 ORTHO05D004945 5.1e-218 761.9 826 52.7
BolC1t04586H Brassica oleracea HOM05D004054 ORTHO05D004945 5.1e-218 761.9 826 52.8
BcaC09g48754 Brassica carinata HOM05D004054 ORTHO05D004945 1.1e-217 760.8 827 52.6
arahy.Tifrunner.gnm1.ann1.B2D650 Arachis hypogaea HOM05D004054 ORTHO05D004945 5.6e-217 758.4 854 53.3
SalBow2G2854 Salvia bowleyana HOM05D004054 ORTHO05D004945 2.1e-216 756.5 851 52.8
Nn3g19739 Nelumbo nucifera HOM05D004054 ORTHO05D004945 1.3e-213 747.3 731 57.6
BcaB04g18970 Brassica carinata HOM05D004054 ORTHO05D004945 1.2e-211 740.7 866 50.6
AUR62026254 Chenopodium quinoa HOM05D004054 ORTHO05D004945 1.0e-210 737.6 844 51.8
Oeu028539.1 Olea europaea HOM05D004054 ORTHO05D004945 4.7e-208 728.8 908 49.0
A03p40440 Brassica napus HOM05D004054 ORTHO05D004945 3.1e-207 726.1 739 57.0
VMungo1215G1372 Vigna mungo HOM05D004054 ORTHO05D004945 9.3e-204 714.5 1111 43.0
BcaC01g03722 Brassica carinata HOM05D004054 ORTHO05D004945 1.0e-202 711.1 858 50.3
ATR0564G248 Amborella trichopoda HOM05D004054 ORTHO05D004945 1.8e-199 700.3 879 49.4
CDE09G0195 Ceratophyllum demersum HOM05D004054 ORTHO05D004945 3.8e-197 692.6 882 46.9
Hund05913 Selenicereus undatus HOM05D004054 ORTHO05D004945 3.2e-196 689.5 811 49.8
Solyc05g007030.4 Solanum lycopersicum HOM05D004054 ORTHO05D004945 1.0e-194 684.5 602 62.6
Cpa.g.sc5.276 Carica papaya HOM05D004054 ORTHO05D004945 1.8e-191 673.7 559 65.5
HPP92_011033 Vanilla planifolia HOM05D004054 ORTHO05D004945 3.8e-189 666.0 881 46.0
EL10Ac6g13147 Beta vulgaris HOM05D004054 ORTHO05D004945 7.9e-187 658.3 860 46.6
Zm00001eb409770 Zea mays HOM05D004054 ORTHO05D004945 8.2e-176 621.7 869 46.5
Gohir.A12G166800 Gossypium hirsutum HOM05D004054 ORTHO05D004945 2.5e-172 610.1 560 61.2
SEGI_39580 Sequoiadendron giganteum HOM05D004054 ORTHO05D004945 2.3e-170 603.6 913 42.4
Phvul.002G066700 Phaseolus vulgaris HOM05D004054 ORTHO05D004945 9.7e-169 598.2 574 58.2
Lsat_1_v5_gn_4_9281 Lactuca sativa HOM05D004054 ORTHO05D004945 1.1e-167 594.7 789 46.9
CiPaw.06G080700 Carya illinoinensis HOM05D004054 ORTHO05D004945 1.5e-158 564.3 444 69.1
unitig_22.g6528 Utricularia gibba HOM05D004054 ORTHO05D004945 1.7e-152 544.3 886 42.1
Nn1g02896 Nelumbo nucifera HOM05D004054 ORTHO05D004945 4.1e-151 539.7 884 41.5
CDE02G2379 Ceratophyllum demersum HOM05D004054 ORTHO05D004945 1.5e-148 531.2 683 45.4
ECA234G1496 Erigeron canadensis HOM05D004054 ORTHO05D004945 5.5e-148 529.3 788 44.8
HanXRQChr03g0092771 Helianthus annuus HOM05D004054 ORTHO05D004945 9.7e-145 518.5 751 44.2
Ah.03g132020 Amaranthus hybridus HOM05D004054 ORTHO05D004945 2.8e-144 516.9 562 52.8
Psat0s2845g0120 Pisum sativum HOM05D004054 ORTHO05D004945 1.0e-133 481.9 423 64.8
Zm00001eb066230 Zea mays HOM05D004054 ORTHO05D004945 3.7e-120 436.8 632 45.9
Mapoly0224s0002 Marchantia polymorpha HOM05D004054 ORTHO05D004945 1.1e-119 435.3 827 36.5
unitig_8.g3947 Utricularia gibba HOM05D004054 ORTHO05D004945 1.4e-111 408.3 530 47.0
Pp3c16_680 Physcomitrium patens HOM05D004054 ORTHO05D004945 4.7e-99 366.7 804 32.6
SMO119G0368 Selaginella moellendorffii HOM05D004054 ORTHO05D004945 1.8e-90 338.2 650 36.2
AagrBONN_evm.TU.Sc2ySwM_228.4114 Anthoceros agrestis HOM05D004054 ORTHO05D004945 2.4e-87 327.8 655 34.2
CiPaw.06G080600 Carya illinoinensis HOM05D004054 ORTHO05D004945 1.3e-85 322.0 330 55.2
Phvul.002G066500 Phaseolus vulgaris HOM05D004054 ORTHO05D004945 1.3e-80 305.4 282 61.3
Potri.008G194566 Populus trichocarpa HOM05D004054 ORTHO05D004945 7.9e-78 296.2 255 64.7
Cpa.g.sc5.277 Carica papaya HOM05D004054 ORTHO05D004945 1.4e-71 275.4 322 50.6
Potri.008G194632 Populus trichocarpa HOM05D004054 ORTHO05D004945 1.1e-47 196.1 195 62.6
Gohir.A12G166900 Gossypium hirsutum HOM05D004054 ORTHO05D004945 3.2e-47 194.5 255 47.5
MSTRG.2359 Avicennia marina HOM05D004054 ORTHO05D004945 7.2e-39 166.8 170 56.5
RcHm_v2.0_Chr1g0331861 Rosa chinensis HOM05D004054 ORTHO05D004945 2.9e-32 144.8 138 57.2
C02p33030 Brassica napus HOM05D004054 ORTHO05D004945 2.5e-31 141.7 394 32.2
C03p36410 Brassica napus HOM05D004054 ORTHO05D004945 2.6e-28 131.7 394 32.0
BolC3t15954H Brassica oleracea HOM05D004054 ORTHO05D004945 2.6e-28 131.7 394 32.0
A05p04500 Brassica napus HOM05D004054 ORTHO05D004945 4.7e-22 110.9 186 40.3
C03p62480 Brassica napus HOM05D004054 ORTHO05D004945 4.7e-22 110.9 186 40.3
CBR_g39858 Chara braunii HOM05D004054 ORTHO05D009492 5.2e-21 107.5 351 28.8
Lalb_Chr17g0340371 Lupinus albus HOM05D004054 ORTHO05D004945 5.4e-18 97.4 60 85.0
C08p43480 Brassica napus HOM05D004054 ORTHO05D004945 1.2e-17 96.3 130 47.7
C06p17170 Brassica napus HOM05D004054 ORTHO05D004945 1.3e-16 92.8 176 36.9
A01p41860 Brassica napus HOM05D004054 ORTHO05D004945 1.6e-14 85.9 96 50.0
BolC3t18505H Brassica oleracea HOM05D004054 ORTHO05D004945 5.2e-13 80.9 197 35.5
PGSC0003DMG402017622 Solanum tuberosum HOM05D004054 ORTHO05D004945 5.2e-13 80.9 101 51.5
CAN.G793.43 Capsicum annuum HOM05D004054 ORTHO05D004945 6.8e-13 80.5 171 38.0
unitig_8.g3946 Utricularia gibba HOM05D004054 ORTHO05D004945 8.8e-13 80.1 76 43.4
A06p30220 Brassica napus HOM05D003604 ORTHO05D004110 5.4e-10 70.9 75 52.0
Lsat_1_v5_gn_3_52120 Lactuca sativa HOM05D004054 ORTHO05D004945 3.5e-09 68.2 76 44.7
BcaC08g44394 Brassica carinata HOM05D004054 ORTHO05D004945 4.5e-09 67.8 177 31.1
Lsat_1_v5_gn_7_73540 Lactuca sativa HOM05D004054 ORTHO05D004945 1.3e-08 66.2 69 47.8
CBR_g39856 Chara braunii HOM05D000019 ORTHO05D000353 2.9e-08 65.1 219 24.7
C06p10280 Brassica napus HOM05D011797 ORTHO05D012335 8.6e-08 63.5 37 83.8
CBR_g39853 Chara braunii HOM05D000019 ORTHO05D000002 7.3e-07 60.5 49 57.1
Lsat_1_v5_gn_5_60100 Lactuca sativa HOM05D004054 ORTHO05D036438 2.1e-06 58.9 86 44.2
Glyma.06G214300 Glycine max HOM05D004054 ORTHO05D211863 4.7e-06 57.8 49 61.2


User provided reference genes

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