Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G3325 Trifolium pratense HOM05D006125 ORTHO05D007404 7.7e-35 150.2 92 100.0
TPR.G29449 Trifolium pratense HOM05D006125 ORTHO05D007404 1.5e-25 119.4 87 73.6
Ca_06644_v3 Cicer arietinum L. HOM05D006125 ORTHO05D007404 8.8e-23 110.2 91 64.8
Psat7g263200 Pisum sativum HOM05D006125 ORTHO05D007404 2.0e-22 109.0 90 66.7
Medtr4g007290 Medicago truncatula HOM05D006125 ORTHO05D007404 4.8e-21 104.4 90 62.2
Lj3g0014233 Lotus japonicus HOM05D006125 ORTHO05D007404 4.5e-19 97.8 90 57.8
Phvul.010G162500 Phaseolus vulgaris HOM05D006125 ORTHO05D007404 5.9e-19 97.4 84 59.5
Actinidia25476 Actinidia chinensis HOM05D006125 ORTHO05D007404 2.9e-18 95.1 74 63.5
Glyma.07G021900 Glycine max HOM05D006125 ORTHO05D007404 1.1e-17 93.2 90 54.4
Ciclev10026865m.g Citrus clementina HOM05D006125 ORTHO05D007404 1.5e-17 92.8 85 56.5
arahy.Tifrunner.gnm1.ann1.CEK6A4 Arachis hypogaea HOM05D006125 ORTHO05D007404 4.2e-17 91.3 85 56.5
Glyma.08G219900 Glycine max HOM05D006125 ORTHO05D007404 7.2e-17 90.5 73 60.3
arahy.Tifrunner.gnm1.ann1.P1DY4U Arachis hypogaea HOM05D006125 ORTHO05D007404 1.6e-16 89.4 83 56.6
CiPaw.09G167300 Carya illinoinensis HOM05D006125 ORTHO05D007404 1.6e-16 89.4 90 53.3
QL07p030560 Quercus lobata HOM05D006125 ORTHO05D007404 3.6e-16 88.2 82 53.7
RcHm_v2.0_Chr2g0132751 Rosa chinensis HOM05D006125 ORTHO05D007404 4.7e-16 87.8 89 53.9
THA.LOC104808176 Tarenaya hassleriana HOM05D006125 ORTHO05D007404 6.1e-16 87.4 63 65.1
Actinidia18251 Actinidia chinensis HOM05D006125 ORTHO05D007404 1.4e-15 86.3 70 60.0
CSS0032300 Camellia sinensis var. sinensis HOM05D006125 ORTHO05D007404 1.4e-15 86.3 70 61.4
Cpa.g.sc10.63 Carica papaya HOM05D006125 ORTHO05D007404 1.4e-15 86.3 63 65.1
QL07p031505 Quercus lobata HOM05D006125 ORTHO05D007404 1.4e-15 86.3 82 52.4
Thecc.06G043200 Theobroma cacao HOM05D006125 ORTHO05D007404 1.8e-15 85.9 86 48.8
Prupe.3G100100 Prunus persica HOM05D006125 ORTHO05D007404 2.3e-15 85.5 73 56.2
CANSAT56G2558 Cannabis sativa HOM05D006125 ORTHO05D007404 3.0e-15 85.1 90 51.1
Lalb_Chr04g0264571 Lupinus albus HOM05D006125 ORTHO05D007404 3.0e-15 85.1 80 58.8
Atru.chr1.2788 Acer truncatum HOM05D006125 ORTHO05D007404 5.2e-15 84.3 71 54.9
MD17G1224400 Malus domestica HOM05D006125 ORTHO05D007404 5.2e-15 84.3 72 58.3
Aa31LG4G1200 Aethionema arabicum HOM05D006125 ORTHO05D007404 6.8e-15 84.0 63 57.1
CARHR073580 Cardamine hirsuta HOM05D006125 ORTHO05D007404 6.8e-15 84.0 63 55.6
MD09G1225600 Malus domestica HOM05D006125 ORTHO05D007404 6.8e-15 84.0 72 58.3
Os12g0556400 Oryza sativa ssp. japonica HOM05D006125 ORTHO05D007404 8.8e-15 83.6 78 50.0
Prupe.2G074900 Prunus persica HOM05D006125 ORTHO05D007404 8.8e-15 83.6 89 48.3
Gohir.D06G119100 Gossypium hirsutum HOM05D006125 ORTHO05D007404 1.2e-14 83.2 85 47.1
MELO3C023472.2 Cucumis melo HOM05D006125 ORTHO05D007404 1.5e-14 82.8 90 51.1
Gohir.A06G114500 Gossypium hirsutum HOM05D006125 ORTHO05D007404 1.5e-14 82.8 85 47.1
EL10Ac8g19423 Beta vulgaris HOM05D006125 ORTHO05D007404 2.0e-14 82.4 70 72.9
Cc04_g05190 Coffea canephora HOM05D006125 ORTHO05D007404 2.0e-14 82.4 79 53.2
Eucgr.J03118 Eucalyptus grandis HOM05D006125 ORTHO05D007404 2.0e-14 82.4 85 50.6
Manes.11G068700 Manihot esculenta HOM05D006125 ORTHO05D007404 2.0e-14 82.4 91 50.5
Sp5g34850 Schrenkiella parvula HOM05D006125 ORTHO05D007404 3.4e-14 81.6 48 64.6
Thhalv10009235m.g Eutrema salsugineum HOM05D006125 ORTHO05D007404 4.4e-14 81.3 63 57.1
ClCG09G003380 Citrullus lanatus HOM05D006125 ORTHO05D007404 5.7e-14 80.9 90 51.1
Nitab4.5_0002700g0200 Nicotiana tabacum HOM05D006125 ORTHO05D007404 5.7e-14 80.9 74 54.1
Zm00001eb176360 Zea mays HOM05D006125 ORTHO05D007404 7.5e-14 80.5 78 48.7
ATR0580G075 Amborella trichopoda HOM05D006125 ORTHO05D007404 9.8e-14 80.1 71 54.9
Dinv21417 Davidia involucrata HOM05D006125 ORTHO05D007404 9.8e-14 80.1 84 47.6
TAR383G0490 Trochodendron aralioides HOM05D006125 ORTHO05D007404 9.8e-14 80.1 71 52.1
Aa31LG7G580 Aethionema arabicum HOM05D006125 ORTHO05D007404 1.7e-13 79.3 63 55.6
Hma1.2p1_0329F.1_g127170 Hydrangea macrophylla HOM05D006125 ORTHO05D007404 1.7e-13 79.3 72 50.0
FAN02G1155 Fragaria x ananassa HOM05D006125 ORTHO05D007404 2.2e-13 79.0 46 71.7
AUR62040628 Chenopodium quinoa HOM05D006125 ORTHO05D007404 2.8e-13 78.6 63 55.6
Duzib160G0610 Durio zibethinus HOM05D006125 ORTHO05D007404 2.8e-13 78.6 87 47.1
BcaC08g47537 Brassica carinata HOM05D006125 ORTHO05D007404 3.7e-13 78.2 47 63.8
A07p44800 Brassica napus HOM05D006125 ORTHO05D007404 3.7e-13 78.2 47 63.8
C06p53620 Brassica napus HOM05D006125 ORTHO05D007404 3.7e-13 78.2 47 63.8
BolC6t40378H Brassica oleracea HOM05D006125 ORTHO05D007404 3.7e-13 78.2 47 63.8
BraA07t31987Z Brassica rapa HOM05D006125 ORTHO05D007404 3.7e-13 78.2 47 63.8
PGR031G3360 Punica granatum HOM05D006125 ORTHO05D007404 3.7e-13 78.2 63 55.6
PGR037G0004 Punica granatum HOM05D006125 ORTHO05D007404 3.7e-13 78.2 63 55.6
AL1G28160 Arabidopsis lyrata HOM05D006125 ORTHO05D007404 4.9e-13 77.8 63 49.2
FAN14G2502 Fragaria x ananassa HOM05D006125 ORTHO05D007404 4.9e-13 77.8 63 57.1
AUR62034053 Chenopodium quinoa HOM05D006125 ORTHO05D007404 6.3e-13 77.4 63 54.0
FAN05G4250 Fragaria x ananassa HOM05D006125 ORTHO05D007404 6.3e-13 77.4 46 69.6
AT1G16000 Arabidopsis thaliana HOM05D006125 ORTHO05D007404 8.3e-13 77.0 51 58.8
Thhalv10019388m.g Eutrema salsugineum HOM05D006125 ORTHO05D007404 8.3e-13 77.0 57 54.4
FvH4_6g28500 Fragaria vesca HOM05D006125 ORTHO05D007404 8.3e-13 77.0 46 69.6
Os08g0272000 Oryza sativa ssp. japonica HOM05D006125 ORTHO05D007404 8.3e-13 77.0 78 44.9
Rhsim08G0204300 Rhododendron simsii HOM05D006125 ORTHO05D007404 8.3e-13 77.0 103 46.6
HPP92_003757 Vanilla planifolia HOM05D006125 ORTHO05D007404 8.3e-13 77.0 73 50.7
CAN.G407.2 Capsicum annuum HOM05D006125 ORTHO05D007404 1.1e-12 76.6 88 42.0
Nitab4.5_0009867g0040 Nicotiana tabacum HOM05D006125 ORTHO05D007404 1.1e-12 76.6 47 66.0
AT1G80890 Arabidopsis thaliana HOM05D006125 ORTHO05D007404 1.8e-12 75.9 63 50.8
BcaB02g08714 Brassica carinata HOM05D006125 ORTHO05D007404 1.8e-12 75.9 63 52.4
Carub.0001s1580 Capsella rubella HOM05D006125 ORTHO05D007404 1.8e-12 75.9 47 61.7
CDE03G0106 Ceratophyllum demersum HOM05D006125 ORTHO05D007404 1.8e-12 75.9 75 65.3
CDE06G2663 Ceratophyllum demersum HOM05D006125 ORTHO05D007404 1.8e-12 75.9 75 65.3
SalBow7G4057 Salvia bowleyana HOM05D006125 ORTHO05D007404 1.8e-12 75.9 74 47.3
Solyc03g117580.3 Solanum lycopersicum HOM05D006125 ORTHO05D007404 1.8e-12 75.9 74 48.6
Sopen03g036490 Solanum pennellii HOM05D006125 ORTHO05D007404 1.8e-12 75.9 74 48.6
AL2G40490 Arabidopsis lyrata HOM05D006125 ORTHO05D007404 2.4e-12 75.5 90 43.3
Gorai.010G136700 Gossypium raimondii HOM05D006125 ORTHO05D007404 2.4e-12 75.5 91 42.9
BraA07t30336Z Brassica rapa HOM05D006125 ORTHO05D007404 3.1e-12 75.1 61 50.8
Sed0014955 Sechium edule HOM05D006125 ORTHO05D007404 3.1e-12 75.1 70 51.4
PGSC0003DMG400014151 Solanum tuberosum HOM05D006125 ORTHO05D007404 3.1e-12 75.1 73 49.3
Sc12g0007910 Simmondsia chinensis HOM05D006125 ORTHO05D007404 7.0e-12 73.9 80 48.8
Aqoxy7G03387 Aquilegia oxysepala HOM05D006125 ORTHO05D007404 9.2e-12 73.6 47 68.1
HanXRQChr05g0153751 Helianthus annuus HOM05D006125 ORTHO05D007404 1.2e-11 73.2 77 42.9
SGA_v2.0_scaffold5G02790 Striga asiatica HOM05D006125 ORTHO05D007404 1.6e-11 72.8 57 50.9
Oeu009806.1 Olea europaea HOM05D006125 ORTHO05D007404 2.0e-11 72.4 72 44.4
ECA246G3825 Erigeron canadensis HOM05D006125 ORTHO05D007404 3.5e-11 71.6 71 47.9
Potri.001G043300 Populus trichocarpa HOM05D006125 ORTHO05D007404 4.5e-11 71.2 45 64.4
Dinv23278 Davidia involucrata HOM05D006125 ORTHO05D007404 5.9e-11 70.9 54 57.4
Sed0010339 Sechium edule HOM05D006125 ORTHO05D007404 5.9e-11 70.9 70 51.4
BcaC08g45345 Brassica carinata HOM05D006125 ORTHO05D007404 7.8e-11 70.5 45 57.8
A07p26910 Brassica napus HOM05D006125 ORTHO05D007404 7.8e-11 70.5 45 57.8
C06p29590 Brassica napus HOM05D006125 ORTHO05D007404 7.8e-11 70.5 45 57.8
BolC6t38124H Brassica oleracea HOM05D006125 ORTHO05D007404 7.8e-11 70.5 45 57.8
Duzib235G1153 Durio zibethinus HOM05D006125 ORTHO05D007404 7.8e-11 70.5 65 49.2
Migut.I00687 Erythranthe guttata HOM05D006125 ORTHO05D007404 1.3e-10 69.7 71 46.5
unitig_62.g23831 Utricularia gibba HOM05D006125 ORTHO05D007404 1.3e-10 69.7 80 43.8
vmacro19061 Vaccinium macrocarpon HOM05D006125 ORTHO05D007404 1.3e-10 69.7 39 74.4
MBI14_g09098_MAGBIO Magnolia biondii HOM05D006125 ORTHO05D007404 2.9e-10 68.6 79 41.8
Manes.04G101402 Manihot esculenta HOM05D006125 ORTHO05D007404 2.9e-10 68.6 59 55.9
CsaV3_7G031850 Cucumis sativus L. HOM05D006125 ORTHO05D007404 6.6e-10 67.4 59 54.2
Potri.003G183501 Populus trichocarpa HOM05D006125 ORTHO05D007404 6.6e-10 67.4 63 50.8
Sp1g14310 Schrenkiella parvula HOM05D006125 ORTHO05D007404 8.6e-10 67.0 45 55.6
DCAR_021146 Daucus carota HOM05D006125 ORTHO05D007404 1.1e-09 66.6 40 60.0
COL.COLO4_26743 Corchorus olitorius HOM05D006125 ORTHO05D007404 1.5e-09 66.2 42 59.5
TWI12G0957 Tripterygium wilfordii HOM05D006125 ORTHO05D007404 1.5e-09 66.2 72 44.4
CARHR016510 Cardamine hirsuta HOM05D006125 ORTHO05D007404 1.9e-09 65.9 54 48.1
QL04p040226 Quercus lobata HOM05D006125 ORTHO05D007404 1.9e-09 65.9 52 53.8
PSO782G1324 Papaver somniferum HOM05D006125 ORTHO05D007404 3.3e-09 65.1 72 47.2
Cfa017829 Carpinus fangiana HOM05D006125 ORTHO05D007404 4.3e-09 64.7 59 54.2
Haze_20423 Corylus avellana HOM05D006125 ORTHO05D007404 7.3e-09 63.9 59 52.5
BcaB02g07240 Brassica carinata HOM05D005650 ORTHO05D007020 9.5e-09 63.5 61 42.6
SHI11295 Sapria himalayana HOM05D000002 ORTHO05D000001 1.6e-08 62.8 43 55.8
HanXRQChr08g0219721 Helianthus annuus HOM05D006125 ORTHO05D007404 2.1e-08 62.4 39 56.4
Sabra03G0134100 Salix brachista HOM05D006125 ORTHO05D007404 6.1e-08 60.8 43 55.8
Sabra01G0029800 Salix brachista HOM05D006125 ORTHO05D007404 1.0e-07 60.1 51 54.9
SEGI_23088 Sequoiadendron giganteum HOM05D006125 ORTHO05D007404 1.4e-07 59.7 40 57.5
BolC2t09694H Brassica oleracea HOM05D006125 ORTHO05D007404 4.0e-07 58.2 44 47.7
Mapoly0116s0019 Marchantia polymorpha HOM05D006125 ORTHO05D007404 5.2e-07 57.8 41 56.1
SalBow6G4114 Salvia bowleyana HOM05D006125 ORTHO05D007404 2.0e-06 55.8 62 40.3
Peaxi162Scf00553g00539 Petunia axillaris HOM05D006125 ORTHO05D007404 7.5e-06 53.9 90 40.0
GSVIVG01015983001 Vitis vinifera HOM05D006125 ORTHO05D007404 9.8e-06 53.5 39 48.7


User provided reference genes

Program Settings