Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G33247 Trifolium pratense HOM05D004963 ORTHO05D006638 0.0e+00 3858.1 1960 100.0
Medtr6g004840 Medicago truncatula HOM05D004963 ORTHO05D006638 0.0e+00 3453.7 1961 88.8
Psat1g054400 Pisum sativum HOM05D004963 ORTHO05D006638 0.0e+00 3429.8 1938 88.9
Ca_04160_v3 Cicer arietinum L. HOM05D004963 ORTHO05D006638 0.0e+00 3361.6 1933 87.1
Lj2g0007459 Lotus japonicus HOM05D004963 ORTHO05D006638 0.0e+00 3125.9 1935 81.0
Glyma.05G003500 Glycine max HOM05D004963 ORTHO05D006638 0.0e+00 3063.5 1935 80.3
Phvul.004G006800 Phaseolus vulgaris HOM05D004963 ORTHO05D006638 0.0e+00 2988.4 1938 77.8
Lalb_Chr06g0175731 Lupinus albus HOM05D004963 ORTHO05D006638 0.0e+00 2944.5 1931 77.3
arahy.Tifrunner.gnm1.ann1.8578L4 Arachis hypogaea HOM05D004963 ORTHO05D006638 0.0e+00 2882.4 1958 74.8
VMungo0464G1605 Vigna mungo HOM05D004963 ORTHO05D006638 0.0e+00 2848.5 2238 66.9
Prupe.3G292000 Prunus persica HOM05D004963 ORTHO05D006638 0.0e+00 2499.9 1948 65.6
Dinv35107 Davidia involucrata HOM05D004963 ORTHO05D006638 0.0e+00 2491.8 1944 65.0
Cfa007367 Carpinus fangiana HOM05D004963 ORTHO05D006638 0.0e+00 2473.4 1946 64.8
CiPaw.03G043900 Carya illinoinensis HOM05D004963 ORTHO05D006638 0.0e+00 2470.7 1944 64.5
GSVIVG01032403001 Vitis vinifera HOM05D004963 ORTHO05D006638 0.0e+00 2467.6 1948 63.6
MD17G1026700 Malus domestica HOM05D004963 ORTHO05D006638 0.0e+00 2430.6 1956 63.9
TAR629G0020 Trochodendron aralioides HOM05D004963 ORTHO05D006638 0.0e+00 2407.9 1947 62.3
RcHm_v2.0_Chr2g0173101 Rosa chinensis HOM05D004963 ORTHO05D006638 0.0e+00 2401.7 1941 63.1
FvH4_6g51430 Fragaria vesca HOM05D004963 ORTHO05D006638 0.0e+00 2389.0 1941 62.3
Haze_14742 Corylus avellana HOM05D004963 ORTHO05D006638 0.0e+00 2381.7 1971 62.4
CANSAT64G0570 Cannabis sativa HOM05D004963 ORTHO05D006638 0.0e+00 2380.9 1937 62.4
Manes.17G112100 Manihot esculenta HOM05D004963 ORTHO05D006638 0.0e+00 2353.6 1941 62.0
Potri.001G345100 Populus trichocarpa HOM05D004963 ORTHO05D006638 0.0e+00 2343.2 1940 60.5
CSS0016229 Camellia sinensis var. sinensis HOM05D004963 ORTHO05D006638 0.0e+00 2335.8 2026 59.3
TWI56G0249 Tripterygium wilfordii HOM05D004963 ORTHO05D006638 0.0e+00 2332.8 1940 61.0
Thecc.04G017500 Theobroma cacao HOM05D004963 ORTHO05D006638 0.0e+00 2330.8 1950 60.9
MELO3C026582.2 Cucumis melo HOM05D004963 ORTHO05D006638 0.0e+00 2303.9 1952 59.6
CsaV3_3G042810 Cucumis sativus L. HOM05D004963 ORTHO05D006638 0.0e+00 2290.8 1954 59.2
Lju41A42T102 Lonicera japonica HOM05D004963 ORTHO05D006638 0.0e+00 2289.2 1945 60.8
PGR083G0595 Punica granatum HOM05D004963 ORTHO05D006638 0.0e+00 2277.7 1940 59.2
Sed0022939 Sechium edule HOM05D004963 ORTHO05D006638 0.0e+00 2244.9 1950 57.8
Sabra16G0224100 Salix brachista HOM05D004963 ORTHO05D006638 0.0e+00 2222.6 2143 54.3
Nn4g22627 Nelumbo nucifera HOM05D004963 ORTHO05D006638 0.0e+00 2210.3 1837 60.6
Nitab4.5_0001040g0180 Nicotiana tabacum HOM05D004963 ORTHO05D006638 0.0e+00 2202.6 1960 56.7
Rhsim10G0016800 Rhododendron simsii HOM05D004963 ORTHO05D006638 0.0e+00 2198.7 2145 54.3
COL.COLO4_29124 Corchorus olitorius HOM05D004963 ORTHO05D006638 0.0e+00 2195.2 1940 58.9
PGSC0003DMG400008314 Solanum tuberosum HOM05D004963 ORTHO05D006638 0.0e+00 2189.5 1943 56.8
Nitab4.5_0001655g0190 Nicotiana tabacum HOM05D004963 ORTHO05D006638 0.0e+00 2182.5 1956 56.4
CAN.G257.2 Capsicum annuum HOM05D004963 ORTHO05D006638 0.0e+00 2181.0 1940 56.6
Solyc02g070810.4 Solanum lycopersicum HOM05D004963 ORTHO05D006638 0.0e+00 2179.4 1941 56.5
Sopen02g019920 Solanum pennellii HOM05D004963 ORTHO05D006638 0.0e+00 2176.4 1943 56.6
Duzib147G0997 Durio zibethinus HOM05D004963 ORTHO05D006638 0.0e+00 2156.3 1941 58.1
Peaxi162Scf00796g00213 Petunia axillaris HOM05D004963 ORTHO05D006638 0.0e+00 2154.8 1934 55.9
THA.LOC104805370 Tarenaya hassleriana HOM05D004963 ORTHO05D006638 0.0e+00 2154.4 1948 56.7
Cc07_g01650 Coffea canephora HOM05D004963 ORTHO05D006638 0.0e+00 2137.1 1947 57.1
Gohir.A09G029300 Gossypium hirsutum HOM05D004963 ORTHO05D006638 0.0e+00 2131.3 1811 59.9
vmacro05867 Vaccinium macrocarpon HOM05D004963 ORTHO05D006638 0.0e+00 2120.1 2121 53.5
DCAR_001439 Daucus carota HOM05D004963 ORTHO05D006638 0.0e+00 2115.1 1941 56.1
Rhsim10G0015700 Rhododendron simsii HOM05D004963 ORTHO05D006638 0.0e+00 2113.6 1938 57.0
PSO063G6295 Papaver somniferum HOM05D004963 ORTHO05D006638 0.0e+00 2112.8 1948 56.1
Sc03g0007420 Simmondsia chinensis HOM05D004963 ORTHO05D006638 0.0e+00 2111.6 1812 58.2
BcaC08g44458 Brassica carinata HOM05D004963 ORTHO05D006638 0.0e+00 2099.3 1943 55.9
PSO067G0032 Papaver somniferum HOM05D004963 ORTHO05D006638 0.0e+00 2097.0 1944 56.0
AT5G40480 Arabidopsis thaliana HOM05D004963 ORTHO05D006638 0.0e+00 2096.6 1942 56.0
MSTRG.3144 Avicennia marina HOM05D004963 ORTHO05D006638 0.0e+00 2096.2 1939 54.8
Thhalv10027618m.g Eutrema salsugineum HOM05D004963 ORTHO05D006638 0.0e+00 2095.9 1947 55.8
BolC6t37108H Brassica oleracea HOM05D004963 ORTHO05D006638 0.0e+00 2094.3 1955 55.4
Carub.0007s3510 Capsella rubella HOM05D004963 ORTHO05D006638 0.0e+00 2093.9 1937 55.9
BraA07t29729Z Brassica rapa HOM05D004963 ORTHO05D006638 0.0e+00 2084.7 1946 55.5
Aqoxy5G03770 Aquilegia oxysepala HOM05D004963 ORTHO05D006638 0.0e+00 2084.3 1955 54.8
Sp7g01430 Schrenkiella parvula HOM05D004963 ORTHO05D006638 0.0e+00 2082.8 1944 55.6
C06p19070 Brassica napus HOM05D004963 ORTHO05D006638 0.0e+00 2080.4 1971 55.1
AL7G49340 Arabidopsis lyrata HOM05D004963 ORTHO05D006638 0.0e+00 2080.1 1948 55.6
CARHR261510 Cardamine hirsuta HOM05D004963 ORTHO05D006638 0.0e+00 2073.5 1940 55.4
A07p20280 Brassica napus HOM05D004963 ORTHO05D006638 0.0e+00 2069.3 1972 54.8
Ah.03g137060 Amaranthus hybridus HOM05D004963 ORTHO05D006638 0.0e+00 2065.8 1936 54.7
FAN14G4225 Fragaria x ananassa HOM05D004963 ORTHO05D006638 0.0e+00 2061.2 1939 56.2
Aa31LG9G1130 Aethionema arabicum HOM05D004963 ORTHO05D006638 0.0e+00 2038.1 1986 53.3
SalBow1G1005 Salvia bowleyana HOM05D004963 ORTHO05D006638 0.0e+00 2036.5 1938 53.5
Atru.chr6.2399 Acer truncatum HOM05D004963 ORTHO05D006638 0.0e+00 2014.6 1581 64.8
Migut.H00075 Erythranthe guttata HOM05D004963 ORTHO05D006638 0.0e+00 1989.5 1940 53.3
SGA_v2.0_scaffold18G08276 Striga asiatica HOM05D004963 ORTHO05D006638 0.0e+00 1987.6 1953 52.8
AUR62043498 Chenopodium quinoa HOM05D004963 ORTHO05D006638 0.0e+00 1978.0 1932 52.6
AUR62028465 Chenopodium quinoa HOM05D004963 ORTHO05D006638 0.0e+00 1906.3 1971 50.8
BcaB02g07947 Brassica carinata HOM05D004963 ORTHO05D006638 0.0e+00 1897.9 1836 54.0
EL10Ac6g14083 Beta vulgaris HOM05D004963 ORTHO05D006638 0.0e+00 1885.5 1940 51.4
ATR0824G203 Amborella trichopoda HOM05D004963 ORTHO05D006638 0.0e+00 1778.8 1985 48.2
Ciclev10018026m.g Citrus clementina HOM05D004963 ORTHO05D006638 0.0e+00 1567.0 1163 66.3
Oeu046826.1 Olea europaea HOM05D004963 ORTHO05D006638 0.0e+00 1474.9 1263 58.3
Eucgr.J02245 Eucalyptus grandis HOM05D004963 ORTHO05D006638 0.0e+00 1424.5 1264 58.1
Zm00001eb096130 Zea mays HOM05D004963 ORTHO05D006638 0.0e+00 1412.9 1828 43.2
Mapoly0043s0050 Marchantia polymorpha HOM05D004963 ORTHO05D006638 0.0e+00 1311.2 2034 38.4
SMO145G0002 Selaginella moellendorffii HOM05D004963 ORTHO05D006638 0.0e+00 1276.2 1993 37.7
ClCG10G013880 Citrullus lanatus HOM05D004963 ORTHO05D006638 0.0e+00 1247.6 1059 59.9
unitig_748.g6983 Utricularia gibba HOM05D004963 ORTHO05D006638 0.0e+00 1215.3 1431 45.8
Pp3c27_1470 Physcomitrium patens HOM05D004963 ORTHO05D006638 0.0e+00 1195.6 2025 36.3
Gohir.D09G029000 Gossypium hirsutum HOM05D004963 ORTHO05D006638 0.0e+00 1146.3 1002 58.6
Migut.J01521 Erythranthe guttata HOM05D004963 ORTHO05D006638 0.0e+00 1076.2 1147 50.6
CBR_g4853 Chara braunii HOM05D004963 ORTHO05D006638 5.2e-306 1055.4 2118 33.6
Gorai.006G033800 Gossypium raimondii HOM05D004963 ORTHO05D006638 1.9e-263 914.1 759 60.3
ClCG10G013870 Citrullus lanatus HOM05D004963 ORTHO05D006638 1.3e-261 907.9 891 53.2
arahy.Tifrunner.gnm1.ann1.WBLX3G Arachis hypogaea HOM05D004963 ORTHO05D006638 2.8e-251 873.6 669 67.7
Migut.J01523 Erythranthe guttata HOM05D004963 ORTHO05D006638 1.6e-246 857.8 952 50.0
SEGI_19244 Sequoiadendron giganteum HOM05D004963 ORTHO05D006638 1.3e-245 854.7 982 46.7
Ciclev10014326m.g Citrus clementina HOM05D004963 ORTHO05D006638 9.1e-242 842.0 784 55.5
Cpa.g.sc108.69 Carica papaya HOM05D004963 ORTHO05D006638 8.8e-237 825.5 1121 42.9
CDE07G0232 Ceratophyllum demersum HOM05D004963 ORTHO05D006638 2.9e-232 810.4 960 47.2
Hma1.2p1_0999F.1_g246170 Hydrangea macrophylla HOM05D004963 ORTHO05D006638 1.6e-166 592.0 527 55.8
unitig_748.g6984 Utricularia gibba HOM05D004963 ORTHO05D006638 5.2e-165 587.0 474 62.0
DCAR_003836 Daucus carota HOM05D004963 ORTHO05D006638 2.6e-156 558.1 528 52.7
Psat5g189920 Pisum sativum HOM05D004963 ORTHO05D006638 3.5e-153 547.7 306 89.5
CARHR149540 Cardamine hirsuta HOM05D004963 ORTHO05D006638 8.1e-150 536.6 521 55.1
Gohir.D09G029066 Gossypium hirsutum HOM05D004963 ORTHO05D006638 2.4e-146 525.0 457 58.2
Gorai.006G033900 Gossypium raimondii HOM05D004963 ORTHO05D006638 4.5e-140 504.2 435 58.6
Os09g0565500 Oryza sativa ssp. japonica HOM05D004963 ORTHO05D006638 7.1e-138 496.9 660 45.9
MBI06_g10159_MAGBIO Magnolia biondii HOM05D004963 ORTHO05D006638 3.8e-131 474.6 393 61.1
HPP92_013426 Vanilla planifolia HOM05D004963 ORTHO05D006638 3.3e-119 434.9 851 32.7
Atru.chr6.2400 Acer truncatum HOM05D004963 ORTHO05D006638 1.1e-106 393.3 337 59.9
Cpa.g.sc108.68 Carica papaya HOM05D004963 ORTHO05D006638 2.3e-91 342.4 224 77.2
Os09g0565450 Oryza sativa ssp. japonica HOM05D004963 ORTHO05D006638 5.0e-91 341.3 258 63.2
CDE07G2050 Ceratophyllum demersum HOM05D004963 ORTHO05D006638 1.1e-90 340.1 391 46.0
Carub.0007s0778 Capsella rubella HOM05D004963 ORTHO05D006638 9.5e-82 310.5 308 56.5
Psat2g063360 Pisum sativum HOM05D004963 ORTHO05D006638 7.0e-77 294.3 165 88.5
FAN11G1562 Fragaria x ananassa HOM05D004963 ORTHO05D006638 5.6e-74 284.6 270 54.1
FAN09G2859 Fragaria x ananassa HOM05D004963 ORTHO05D006638 1.1e-69 270.4 231 58.9
VMungo1383G2035 Vigna mungo HOM05D004963 ORTHO05D006638 7.0e-69 267.7 290 56.2
FvH4_3g31750 Fragaria vesca HOM05D004963 ORTHO05D006638 1.2e-65 256.9 194 61.9
FvH4_4g00580 Fragaria vesca HOM05D004963 ORTHO05D006638 8.1e-65 254.2 194 60.8
Psat2g110360 Pisum sativum HOM05D002628 ORTHO05D002785 3.7e-62 245.4 287 52.3
CSS0027009 Camellia sinensis var. sinensis HOM05D004963 ORTHO05D006638 2.8e-57 229.2 374 37.7
CDE07G1094 Ceratophyllum demersum HOM05D004963 ORTHO05D006638 1.8e-56 226.5 319 41.1
CBR_g4854 Chara braunii HOM05D004963 ORTHO05D006638 2.0e-55 223.0 526 31.0
Psat5g059840 Pisum sativum HOM05D000434 ORTHO05D007220 2.5e-50 206.1 294 44.2
SEGI_28921 Sequoiadendron giganteum HOM05D004963 ORTHO05D006638 6.4e-46 191.4 301 36.9
Ca_06838_v3 Cicer arietinum L. HOM05D004963 ORTHO05D006638 2.3e-43 183.0 289 43.3
Psat7g053800 Pisum sativum HOM05D001135 ORTHO05D001005 5.3e-40 171.8 107 76.6
Psat5g059720 Pisum sativum HOM05D000434 ORTHO05D007220 7.1e-37 161.4 191 49.7
Glyma.15G246500 Glycine max HOM05D004963 ORTHO05D006638 2.1e-36 159.8 225 45.8
Psat5g189840 Pisum sativum HOM05D001849 ORTHO05D004075 4.6e-36 158.7 93 86.0
Psat3g009720 Pisum sativum HOM05D003492 ORTHO05D005540 2.5e-34 152.9 87 80.5
FAN02G1996 Fragaria x ananassa HOM05D004963 ORTHO05D006638 2.8e-33 149.4 141 56.7
SEGI_35499 Sequoiadendron giganteum HOM05D004963 ORTHO05D006638 1.2e-31 144.1 138 52.2
FvH4_1g22462 Fragaria vesca HOM05D004963 ORTHO05D006638 1.9e-29 136.7 94 67.0
C06p05790 Brassica napus HOM05D004963 ORTHO05D021908 3.9e-27 129.0 132 53.0
C06p05800 Brassica napus HOM05D004963 ORTHO05D021908 7.4e-26 124.8 128 53.9
PGR083G1349 Punica granatum HOM05D004963 ORTHO05D006638 7.4e-26 124.8 156 43.6
Psat6g077960 Pisum sativum HOM05D003926 ORTHO05D005273 9.0e-24 117.9 72 77.8
RcHm_v2.0_Chr5g0056391 Rosa chinensis HOM05D004963 ORTHO05D006638 3.8e-22 112.5 116 52.6
CDE07G0302 Ceratophyllum demersum HOM05D004963 ORTHO05D006638 6.5e-22 111.7 155 40.6
Aqoxy5G03772 Aquilegia oxysepala HOM05D004963 ORTHO05D006638 4.6e-20 105.5 143 44.1
Psat4g170200 Pisum sativum HOM05D003662 ORTHO05D001824 1.0e-19 104.4 55 83.6
Psat7g026160 Pisum sativum HOM05D004963 ORTHO05D001824 1.3e-19 104.0 59 79.7
Actinidia36871 Actinidia chinensis HOM05D004963 ORTHO05D006638 3.3e-18 99.4 88 56.8
Psat0s4196g0080 Pisum sativum HOM05D004963 ORTHO05D006638 2.4e-16 93.2 53 84.9
BcaC08g43235 Brassica carinata HOM05D004963 ORTHO05D021908 1.2e-15 90.9 99 49.5
Thhalv10017260m.g Eutrema salsugineum HOM05D015603 ORTHO05D017573 3.8e-14 85.9 85 52.9
Thhalv10017271m.g Eutrema salsugineum HOM05D015603 ORTHO05D017573 3.8e-14 85.9 85 52.9
Thhalv10017254m.g Eutrema salsugineum HOM05D015603 ORTHO05D017573 8.5e-14 84.7 85 51.8
Zm00001eb027130 Zea mays HOM05D004963 ORTHO05D006638 3.2e-13 82.8 207 30.9
Carub.0006s0908 Capsella rubella HOM05D004963 ORTHO05D021908 4.6e-12 79.0 111 40.5
A02p14020 Brassica napus HOM05D015603 ORTHO05D017573 1.0e-11 77.8 89 48.3
Zm00001eb387740 Zea mays HOM05D004963 ORTHO05D006638 3.0e-11 76.3 88 44.3
BraA02t06462Z Brassica rapa HOM05D015603 ORTHO05D017573 5.1e-11 75.5 87 48.3
Hund10088 Selenicereus undatus HOM05D004963 ORTHO05D006638 7.4e-10 71.6 95 41.1
Cpa.g.c33664.1 Carica papaya HOM05D004963 ORTHO05D006638 1.7e-09 70.5 35 85.7
C02p22570 Brassica napus HOM05D015603 ORTHO05D017573 2.8e-09 69.7 114 40.4
BolC2t08411H Brassica oleracea HOM05D015603 ORTHO05D017573 2.8e-09 69.7 114 40.4
Zm00001eb119700 Zea mays HOM05D004963 ORTHO05D006638 1.1e-08 67.8 74 43.2


User provided reference genes

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