Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G3324 Trifolium pratense HOM05D004949 ORTHO05D006006 2.8e-169 598.6 314 100.0
Psat4g121520 Pisum sativum HOM05D004949 ORTHO05D006006 4.3e-146 521.5 290 92.4
Medtr8g066760 Medicago truncatula HOM05D004949 ORTHO05D006006 2.8e-145 518.8 290 92.1
Lj4g0000928 Lotus japonicus HOM05D004949 ORTHO05D006006 9.4e-141 503.8 290 88.3
Phvul.003G284400 Phaseolus vulgaris HOM05D004949 ORTHO05D006006 2.0e-135 486.1 290 85.2
Lalb_Chr05g0228811 Lupinus albus HOM05D004949 ORTHO05D006006 2.5e-133 479.2 290 82.8
arahy.Tifrunner.gnm1.ann1.78T75P Arachis hypogaea HOM05D004949 ORTHO05D006006 3.2e-133 478.8 290 83.8
VMungo1309G0709 Vigna mungo HOM05D004949 ORTHO05D006006 1.3e-126 456.8 277 83.8
Cfa012457 Carpinus fangiana HOM05D004949 ORTHO05D006006 4.5e-119 431.8 293 74.7
VMungo0251G0718 Vigna mungo HOM05D004949 ORTHO05D006006 5.9e-119 431.4 267 82.4
Prupe.5G033200 Prunus persica HOM05D004949 ORTHO05D006006 5.0e-118 428.3 289 74.4
TAR375G0033 Trochodendron aralioides HOM05D004949 ORTHO05D006006 1.5e-114 416.8 291 69.8
arahy.Tifrunner.gnm1.ann1.M3M86A Arachis hypogaea HOM05D004949 ORTHO05D006006 5.7e-114 414.8 290 75.9
TWI15G0747 Tripterygium wilfordii HOM05D004949 ORTHO05D006006 1.3e-113 413.7 290 71.0
CANSAT21G1226 Cannabis sativa HOM05D004949 ORTHO05D006006 1.1e-112 410.6 290 70.7
Actinidia25973 Actinidia chinensis HOM05D004949 ORTHO05D006006 3.1e-112 409.1 288 71.5
Medtr1g100910 Medicago truncatula HOM05D004949 ORTHO05D006006 3.8e-110 402.1 228 89.0
Potri.003G093300 Populus trichocarpa HOM05D004949 ORTHO05D006006 5.0e-110 401.7 291 68.4
Nn1g00131 Nelumbo nucifera HOM05D004949 ORTHO05D006006 6.5e-110 401.4 291 67.7
Rhsim11G0048300 Rhododendron simsii HOM05D004949 ORTHO05D006006 1.1e-109 400.6 290 67.6
PGR042G3443 Punica granatum HOM05D004949 ORTHO05D006006 4.2e-109 398.7 291 67.7
GSVIVG01013143001 Vitis vinifera HOM05D004949 ORTHO05D006006 5.5e-109 398.3 302 66.6
Atru.chr6.1656 Acer truncatum HOM05D004949 ORTHO05D006006 2.7e-108 396.0 291 68.4
Sed0027872 Sechium edule HOM05D004949 ORTHO05D006006 4.7e-108 395.2 291 68.0
Manes.17G017708 Manihot esculenta HOM05D004949 ORTHO05D006006 8.0e-108 394.4 291 67.4
Sabra03G0062700 Salix brachista HOM05D004949 ORTHO05D006006 8.0e-108 394.4 291 67.4
CsaV3_3G001560 Cucumis sativus L. HOM05D004949 ORTHO05D006006 1.0e-107 394.0 292 68.2
Duzib068G0117 Durio zibethinus HOM05D004949 ORTHO05D006006 1.0e-107 394.0 293 68.9
Eucgr.E00272 Eucalyptus grandis HOM05D004949 ORTHO05D006006 2.3e-107 392.9 291 66.7
CSS0006782 Camellia sinensis var. sinensis HOM05D004949 ORTHO05D006006 5.2e-107 391.7 290 67.9
Ciclev10031452m.g Citrus clementina HOM05D004949 ORTHO05D006006 1.5e-106 390.2 291 66.0
RcHm_v2.0_Chr7g0210111 Rosa chinensis HOM05D004949 ORTHO05D006006 3.7e-105 385.6 291 66.0
MD06G1036000 Malus domestica HOM05D004949 ORTHO05D006006 4.9e-105 385.2 285 68.4
FAN13G2248 Fragaria x ananassa HOM05D004949 ORTHO05D006006 1.0e-102 377.5 289 64.7
Glyma.08G270900 Glycine max HOM05D004949 ORTHO05D006006 1.3e-102 377.1 208 89.4
FAN18G3647 Fragaria x ananassa HOM05D004949 ORTHO05D006006 1.7e-102 376.7 291 63.9
Cc08_g02960 Coffea canephora HOM05D004949 ORTHO05D006006 8.6e-102 374.4 291 65.6
Hma1.2p1_0120F.1_g057130 Hydrangea macrophylla HOM05D004949 ORTHO05D006006 8.6e-102 374.4 291 66.3
FvH4_5g22370 Fragaria vesca HOM05D004949 ORTHO05D006006 1.5e-101 373.6 291 63.6
Sc01g0007370 Simmondsia chinensis HOM05D004949 ORTHO05D006006 1.5e-101 373.6 292 62.3
PSO063G1669 Papaver somniferum HOM05D004949 ORTHO05D006006 1.9e-101 373.2 290 63.4
PSO782G4101 Papaver somniferum HOM05D004949 ORTHO05D006006 3.3e-101 372.5 290 63.1
CAN.G298.24 Capsicum annuum HOM05D004949 ORTHO05D006006 4.3e-101 372.1 291 63.9
COL.COLO4_17003 Corchorus olitorius HOM05D004949 ORTHO05D006006 5.6e-101 371.7 294 65.6
CSS0020726 Camellia sinensis var. sinensis HOM05D004949 ORTHO05D006006 9.5e-101 370.9 272 69.5
CDE06G2155 Ceratophyllum demersum HOM05D004949 ORTHO05D006006 2.1e-100 369.8 290 63.4
PGSC0003DMG400017541 Solanum tuberosum HOM05D004949 ORTHO05D006006 6.1e-100 368.2 291 63.2
Solyc08g076810.4 Solanum lycopersicum HOM05D004949 ORTHO05D006006 1.8e-99 366.7 291 63.6
FAN18G2708 Fragaria x ananassa HOM05D004949 ORTHO05D006006 4.0e-99 365.5 304 60.9
Aqoxy3G01363 Aquilegia oxysepala HOM05D004949 ORTHO05D006006 5.2e-99 365.2 290 65.2
Sopen08g025330 Solanum pennellii HOM05D004949 ORTHO05D006006 5.2e-99 365.2 291 63.6
Aqoxy3G00659 Aquilegia oxysepala HOM05D004949 ORTHO05D006006 6.8e-99 364.8 290 65.2
ECA233G0790 Erigeron canadensis HOM05D004949 ORTHO05D006006 6.8e-99 364.8 290 63.4
FAN04G2495 Fragaria x ananassa HOM05D004949 ORTHO05D006006 2.0e-98 363.2 310 59.7
Carub.0007s2343 Capsella rubella HOM05D004949 ORTHO05D006006 7.5e-98 361.3 290 62.8
HanXRQChr02g0049971 Helianthus annuus HOM05D004949 ORTHO05D006006 1.3e-97 360.5 290 61.7
THA.LOC104812834 Tarenaya hassleriana HOM05D004949 ORTHO05D006006 2.2e-97 359.8 290 62.8
AT4G17910 Arabidopsis thaliana HOM05D004949 ORTHO05D006006 3.7e-97 359.0 290 62.8
MSTRG.7638 Avicennia marina HOM05D004949 ORTHO05D006006 6.4e-97 358.2 291 61.5
CARHR224640 Cardamine hirsuta HOM05D004949 ORTHO05D006006 1.1e-96 357.5 288 62.5
Haze_08210 Corylus avellana HOM05D004949 ORTHO05D006006 1.8e-96 356.7 293 65.5
Gorai.003G183400 Gossypium raimondii HOM05D004949 ORTHO05D006006 4.1e-96 355.5 292 61.6
Ca_14051_v3 Cicer arietinum L. HOM05D004949 ORTHO05D006006 9.2e-96 354.4 239 77.8
AL7G36600 Arabidopsis lyrata HOM05D004949 ORTHO05D006006 2.0e-95 353.2 290 62.1
Aa31LG6G660 Aethionema arabicum HOM05D004949 ORTHO05D006006 5.9e-95 351.7 290 61.7
Gohir.A03G000052 Gossypium hirsutum HOM05D004949 ORTHO05D006006 5.9e-95 351.7 292 61.0
Os03g0378200 Oryza sativa ssp. japonica HOM05D004949 ORTHO05D006006 1.0e-94 350.9 290 61.0
Nitab4.5_0002773g0060 Nicotiana tabacum HOM05D004949 ORTHO05D006006 1.7e-94 350.1 300 60.7
BcaC01g05139 Brassica carinata HOM05D004949 ORTHO05D006006 2.3e-94 349.7 290 60.7
BolC3t15350H Brassica oleracea HOM05D004949 ORTHO05D006006 2.3e-94 349.7 290 60.7
QL12p004876 Quercus lobata HOM05D004949 ORTHO05D006006 2.3e-94 349.7 514 43.4
Lsat_1_v5_gn_6_4100 Lactuca sativa HOM05D004949 ORTHO05D006006 3.0e-94 349.4 292 62.3
BcaB01g03270 Brassica carinata HOM05D004949 ORTHO05D006006 1.5e-93 347.1 290 60.3
BraA03t11719Z Brassica rapa HOM05D004949 ORTHO05D006006 3.3e-93 345.9 290 60.0
Zm00001eb018410 Zea mays HOM05D004949 ORTHO05D006006 3.3e-93 345.9 290 59.3
Thhalv10001430m.g Eutrema salsugineum HOM05D004949 ORTHO05D006006 5.6e-93 345.1 290 59.7
C03p30030 Brassica napus HOM05D004949 ORTHO05D006006 7.3e-93 344.7 290 58.6
A03p25190 Brassica napus HOM05D004949 ORTHO05D006006 9.5e-93 344.4 290 59.7
CiPaw.12G064900 Carya illinoinensis HOM05D004949 ORTHO05D006006 2.1e-92 343.2 291 63.9
EL10Ac5g12089 Beta vulgaris HOM05D004949 ORTHO05D006006 3.6e-92 342.4 291 59.5
Zm00001eb392220 Zea mays HOM05D004949 ORTHO05D006006 6.8e-91 338.2 290 59.0
ATR0665G211 Amborella trichopoda HOM05D004949 ORTHO05D006006 1.7e-89 333.6 293 59.4
Nitab4.5_0000711g0030 Nicotiana tabacum HOM05D004949 ORTHO05D006006 2.3e-86 323.2 264 62.1
Nitab4.5_0005651g0010 Nicotiana tabacum HOM05D004949 ORTHO05D006006 8.6e-86 321.2 300 57.3
Migut.L01003 Erythranthe guttata HOM05D004949 ORTHO05D006006 1.1e-85 320.9 254 61.4
unitig_0.g2339 Utricularia gibba HOM05D004949 ORTHO05D006006 1.1e-85 320.9 290 57.6
vmacro00318 Vaccinium macrocarpon HOM05D004949 ORTHO05D006006 2.1e-84 316.6 217 70.5
SalBow6G3319 Salvia bowleyana HOM05D004949 ORTHO05D006006 2.8e-84 316.2 330 53.3
MD00G1071700 Malus domestica HOM05D004949 ORTHO05D006006 8.1e-84 314.7 266 60.9
Sp4g27350 Schrenkiella parvula HOM05D004949 ORTHO05D006006 1.1e-83 314.3 290 57.6
Peaxi162Scf00236g00034 Petunia axillaris HOM05D004949 ORTHO05D006006 1.2e-82 310.8 293 56.7
Dinv28969 Davidia involucrata HOM05D004949 ORTHO05D006006 8.3e-81 304.7 198 73.7
SEGI_29978 Sequoiadendron giganteum HOM05D004949 ORTHO05D006006 5.4e-80 302.0 293 54.9
HPP92_016910 Vanilla planifolia HOM05D004949 ORTHO05D006006 5.4e-80 302.0 269 58.4
Thecc.03G225400 Theobroma cacao HOM05D004949 ORTHO05D006006 1.6e-79 300.4 209 71.3
SalBow8G0555 Salvia bowleyana HOM05D004949 ORTHO05D006006 3.3e-77 292.7 291 55.3
Mapoly0029s0019 Marchantia polymorpha HOM05D004949 ORTHO05D006006 4.0e-75 285.8 303 49.2
AUR62018700 Chenopodium quinoa HOM05D004949 ORTHO05D006006 5.8e-74 282.0 291 52.9
Pp3c15_10960 Physcomitrium patens HOM05D004949 ORTHO05D006006 1.7e-70 270.4 306 47.4
SHI07305 Sapria himalayana HOM05D004949 ORTHO05D006006 1.9e-69 266.9 290 49.3
AagrBONN_evm.TU.Sc2ySwM_368.549 Anthoceros agrestis HOM05D004949 ORTHO05D006006 2.1e-68 263.5 304 48.0
Oeu048371.1 Olea europaea HOM05D004949 ORTHO05D006006 6.8e-67 258.5 228 57.9
SMO351G0610 Selaginella moellendorffii HOM05D004949 ORTHO05D006006 1.5e-66 257.3 310 46.1
MELO3C013842.2 Cucumis melo HOM05D004949 ORTHO05D006006 6.4e-65 251.9 325 48.3
DCAR_008253 Daucus carota HOM05D004949 ORTHO05D006006 9.3e-64 248.1 290 49.0
Ah.12g055170 Amaranthus hybridus HOM05D004949 ORTHO05D006006 7.8e-63 245.0 272 48.2
Lj8A304G48 Lonicera japonica HOM05D004949 ORTHO05D006006 1.9e-56 223.8 212 55.2
CBR_g46224 Chara braunii HOM05D004949 ORTHO05D006006 1.6e-55 220.7 336 39.6
SGA_v2.0_scaffold38G15014 Striga asiatica HOM05D004949 ORTHO05D006006 1.4e-48 197.6 154 59.1
Rhsim11G0016800 Rhododendron simsii HOM05D004949 ORTHO05D006006 4.2e-48 196.1 327 41.9
DCAR_028920 Daucus carota HOM05D004949 ORTHO05D006006 7.9e-47 191.8 133 69.2
PGSC0003DMG400017507 Solanum tuberosum HOM05D004949 ORTHO05D006006 2.3e-46 190.3 159 60.4
Aa31LG2G21460 Aethionema arabicum HOM05D004949 ORTHO05D006006 3.0e-46 189.9 132 69.7
Gohir.D03G172700 Gossypium hirsutum HOM05D004949 ORTHO05D006006 1.1e-43 181.4 142 62.7
Hund11225 Selenicereus undatus HOM05D004949 ORTHO05D006006 1.8e-43 180.6 267 40.4
MBI04_g33882_MAGBIO Magnolia biondii HOM05D004949 ORTHO05D006006 5.1e-38 162.5 144 57.6
Migut.O00927 Erythranthe guttata HOM05D004949 ORTHO05D006006 8.5e-33 145.2 105 63.8
Glyma.01G095566 Glycine max HOM05D004949 ORTHO05D006006 1.0e-30 138.3 127 62.2
Cre13.g587200 Chlamydomonas reinhardtii HOM05D004949 ORTHO05D006006 1.7e-25 120.9 375 29.3
Cfa022893 Carpinus fangiana HOM05D004949 ORTHO05D006006 2.2e-25 120.6 390 31.0
Gohir.A09G031300 Gossypium hirsutum HOM05D004949 ORTHO05D006006 2.0e-21 107.5 129 45.7
Cpa.g.sc34.32 Carica papaya HOM05D004949 ORTHO05D006006 6.9e-19 99.0 84 60.7
MSTRG.865 Avicennia marina HOM05D004949 ORTHO05D006006 1.9e-16 90.9 125 36.8
PRCOL_00001577 Prasinoderma coloniale HOM05D004949 ORTHO05D006006 1.9e-16 90.9 334 27.8
Gohir.A01G164900 Gossypium hirsutum HOM05D004949 ORTHO05D006006 2.1e-15 87.4 75 57.3
Gohir.A04G065628 Gossypium hirsutum HOM05D004949 ORTHO05D006006 2.1e-15 87.4 75 57.3
Gohir.A05G283800 Gossypium hirsutum HOM05D004949 ORTHO05D006006 4.7e-15 86.3 75 56.0
Gohir.A03G116100 Gossypium hirsutum HOM05D004949 ORTHO05D006006 3.9e-14 83.2 75 56.0
TPR.G39375 Trifolium pratense HOM05D004949 ORTHO05D006006 3.9e-14 83.2 46 91.3
AUR62007303 Chenopodium quinoa HOM05D004949 ORTHO05D006006 3.7e-12 76.6 66 59.1
Gohir.A06G130506 Gossypium hirsutum HOM05D004949 ORTHO05D006006 6.5e-09 65.9 98 38.8
Gohir.A12G128750 Gossypium hirsutum HOM05D004949 ORTHO05D006006 5.2e-06 56.2 47 51.1


User provided reference genes

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