Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G33233 Trifolium pratense HOM05D004754 ORTHO05D005566 5.7e-192 674.1 344 100.0
Psat5g233520 Pisum sativum HOM05D004754 ORTHO05D005566 4.1e-174 614.8 343 87.2
Medtr3g010310 Medicago truncatula HOM05D004754 ORTHO05D005566 2.4e-166 589.0 345 84.1
Medtr0393s0030 Medicago truncatula HOM05D004754 ORTHO05D005566 1.2e-165 586.6 345 83.8
Ca_14146_v3 Cicer arietinum L. HOM05D004754 ORTHO05D005566 4.6e-165 584.7 344 82.8
Ca_02551_v3 Cicer arietinum L. HOM05D004754 ORTHO05D005566 1.7e-164 582.8 341 83.3
Psat0s5166g0080 Pisum sativum HOM05D004754 ORTHO05D005566 1.8e-161 572.8 341 81.2
Lj2g0020778 Lotus japonicus HOM05D004754 ORTHO05D005566 3.4e-160 568.5 341 80.4
Phvul.009G217100 Phaseolus vulgaris HOM05D004754 ORTHO05D005566 9.2e-158 560.5 341 80.4
Glyma.14G055800 Glycine max HOM05D004754 ORTHO05D005566 1.0e-156 557.0 341 80.1
VMungo1309G0019 Vigna mungo HOM05D004754 ORTHO05D005566 1.9e-155 552.7 341 79.2
Atru.chr10.946 Acer truncatum HOM05D004754 ORTHO05D005566 7.1e-150 534.3 341 76.0
Cfa020535 Carpinus fangiana HOM05D004754 ORTHO05D005566 3.5e-149 531.9 341 74.5
Duzib248G0043 Durio zibethinus HOM05D004754 ORTHO05D005566 3.0e-148 528.9 341 75.4
QL05p054004 Quercus lobata HOM05D004754 ORTHO05D005566 1.1e-147 526.9 339 74.9
QL08p010099 Quercus lobata HOM05D004754 ORTHO05D005566 2.5e-147 525.8 339 74.3
Thecc.02G011000 Theobroma cacao HOM05D004754 ORTHO05D005566 3.3e-147 525.4 341 74.5
RcHm_v2.0_Chr5g0015381 Rosa chinensis HOM05D004754 ORTHO05D005566 5.6e-147 524.6 341 73.6
Gorai.004G208700 Gossypium raimondii HOM05D004754 ORTHO05D005566 1.3e-146 523.5 341 73.6
Gorai.013G128400 Gossypium raimondii HOM05D004754 ORTHO05D005566 3.6e-146 521.9 341 73.6
Gohir.A08G179300 Gossypium hirsutum HOM05D004754 ORTHO05D005566 4.8e-146 521.5 341 73.3
Gohir.D08G197900 Gossypium hirsutum HOM05D004754 ORTHO05D005566 1.4e-145 520.0 341 73.3
Prupe.3G237900 Prunus persica HOM05D004754 ORTHO05D005566 1.4e-145 520.0 342 73.4
COL.COLO4_17670 Corchorus olitorius HOM05D004754 ORTHO05D005566 1.8e-145 519.6 339 73.7
Atru.chr10.952 Acer truncatum HOM05D004754 ORTHO05D005566 9.0e-145 517.3 341 74.5
FvH4_2g14961 Fragaria vesca HOM05D004754 ORTHO05D005566 9.0e-145 517.3 341 72.1
Lalb_Chr12g0204311 Lupinus albus HOM05D004754 ORTHO05D005566 4.4e-144 515.0 338 73.4
RcHm_v2.0_Chr5g0052721 Rosa chinensis HOM05D004754 ORTHO05D005566 4.4e-144 515.0 335 73.1
FAN24G0458 Fragaria x ananassa HOM05D004754 ORTHO05D005566 1.3e-143 513.5 341 71.8
Cpa.g.sc17.70 Carica papaya HOM05D004754 ORTHO05D005566 1.7e-143 513.1 341 71.8
MD17G1076300 Malus domestica HOM05D004754 ORTHO05D005566 2.9e-143 512.3 341 71.0
Ciclev10015850m.g Citrus clementina HOM05D004754 ORTHO05D005566 3.8e-143 511.9 344 71.5
Dinv32196 Davidia involucrata HOM05D004754 ORTHO05D005566 3.8e-143 511.9 339 72.6
FAN15G1860 Fragaria x ananassa HOM05D004754 ORTHO05D005566 1.1e-142 510.4 341 71.3
TWI53G1117 Tripterygium wilfordii HOM05D004754 ORTHO05D005566 1.4e-142 510.0 341 72.4
Prupe.1G099600 Prunus persica HOM05D004754 ORTHO05D005566 7.1e-142 507.7 342 71.6
CSS0007960 Camellia sinensis var. sinensis HOM05D004754 ORTHO05D005566 1.6e-141 506.5 339 71.1
CSS0038452 Camellia sinensis var. sinensis HOM05D004754 ORTHO05D005566 1.6e-141 506.5 339 71.1
CiPaw.12G121800 Carya illinoinensis HOM05D004754 ORTHO05D005566 7.9e-141 504.2 341 71.0
Manes.10G102700 Manihot esculenta HOM05D004754 ORTHO05D005566 7.9e-141 504.2 340 71.2
Potri.017G048600 Populus trichocarpa HOM05D004754 ORTHO05D005566 7.9e-141 504.2 341 71.6
Lj1P1166T28 Lonicera japonica HOM05D004754 ORTHO05D005566 2.3e-140 502.7 341 69.5
Dinv15895 Davidia involucrata HOM05D004754 ORTHO05D005566 1.5e-139 500.0 339 70.5
Sabra07G0091800 Salix brachista HOM05D004754 ORTHO05D005566 1.3e-138 496.9 341 70.7
Sc12g0003070 Simmondsia chinensis HOM05D004754 ORTHO05D005566 2.8e-138 495.7 341 69.2
Potri.007G112300 Populus trichocarpa HOM05D004754 ORTHO05D005566 3.6e-138 495.4 341 70.4
TAR626G0708 Trochodendron aralioides HOM05D004754 ORTHO05D005566 8.1e-138 494.2 341 70.1
TAR624G1057 Trochodendron aralioides HOM05D004754 ORTHO05D005566 1.8e-137 493.0 341 70.7
Hma1.2p1_1418F.1_g282250 Hydrangea macrophylla HOM05D004754 ORTHO05D005566 6.9e-137 491.1 341 70.1
vmacro03406 Vaccinium macrocarpon HOM05D004754 ORTHO05D005566 9.0e-137 490.7 337 70.0
DCAR_005794 Daucus carota HOM05D004754 ORTHO05D005566 1.5e-136 490.0 333 70.3
Sopen01g049820 Solanum pennellii HOM05D004754 ORTHO05D005566 2.0e-136 489.6 341 69.2
CANSAT64G0220 Cannabis sativa HOM05D004754 ORTHO05D005566 4.5e-136 488.4 335 68.4
CAN.G1231.9 Capsicum annuum HOM05D004754 ORTHO05D005566 4.5e-136 488.4 341 69.5
CAN.G3385.2 Capsicum annuum HOM05D004754 ORTHO05D005566 4.5e-136 488.4 341 69.5
Nitab4.5_0005392g0050 Nicotiana tabacum HOM05D004754 ORTHO05D005566 5.8e-136 488.0 341 69.2
THA.LOC104812357 Tarenaya hassleriana HOM05D004754 ORTHO05D005566 5.8e-136 488.0 338 68.3
Eucgr.K03201 Eucalyptus grandis HOM05D004754 ORTHO05D005566 7.6e-136 487.6 344 69.8
Manes.07G037300 Manihot esculenta HOM05D004754 ORTHO05D005566 1.7e-135 486.5 340 70.6
ClCG03G006380 Citrullus lanatus HOM05D004754 ORTHO05D005566 1.1e-134 483.8 337 69.7
Rhsim13G0119600 Rhododendron simsii HOM05D004754 ORTHO05D005566 1.9e-134 483.0 339 69.0
Haze_09498 Corylus avellana HOM05D004754 ORTHO05D005566 3.2e-134 482.3 329 71.1
Nitab4.5_0002815g0050 Nicotiana tabacum HOM05D004754 ORTHO05D005566 5.4e-134 481.5 341 68.3
PSO210G1456 Papaver somniferum HOM05D004754 ORTHO05D005566 1.2e-133 480.3 341 67.4
PSO210G6921 Papaver somniferum HOM05D004754 ORTHO05D005566 1.6e-133 479.9 341 67.7
Oeu018596.1 Olea europaea HOM05D004754 ORTHO05D005566 4.6e-133 478.4 341 67.7
Lalb_Chr12g0204271 Lupinus albus HOM05D004754 ORTHO05D005566 1.8e-132 476.5 338 69.5
Cc02_g19240 Coffea canephora HOM05D004754 ORTHO05D005566 3.9e-132 475.3 341 65.7
Hund19582 Selenicereus undatus HOM05D004754 ORTHO05D005566 3.9e-132 475.3 341 68.0
Oeu010398.1 Olea europaea HOM05D004754 ORTHO05D005566 5.1e-132 474.9 339 67.8
PGR031G3887 Punica granatum HOM05D004754 ORTHO05D005566 8.7e-132 474.2 341 68.0
Rhsim01G0266600 Rhododendron simsii HOM05D004754 ORTHO05D005566 8.7e-132 474.2 339 67.6
Sed0000755 Sechium edule HOM05D004754 ORTHO05D005566 1.9e-131 473.0 334 69.2
AUR62008508 Chenopodium quinoa HOM05D004754 ORTHO05D005566 2.5e-131 472.6 337 67.7
Eucgr.E02475 Eucalyptus grandis HOM05D004754 ORTHO05D005566 3.3e-131 472.2 344 68.3
CsaV3_1G039230 Cucumis sativus L. HOM05D004754 ORTHO05D005566 5.6e-131 471.5 334 68.9
EL10Ac5g11113 Beta vulgaris HOM05D004754 ORTHO05D005566 7.4e-131 471.1 338 69.8
MELO3C015347.2 Cucumis melo HOM05D004754 ORTHO05D005566 7.4e-131 471.1 334 68.3
MSTRG.16715 Avicennia marina HOM05D004754 ORTHO05D005566 1.3e-130 470.3 341 65.7
Migut.B00386 Erythranthe guttata HOM05D004754 ORTHO05D005566 2.1e-130 469.5 343 67.9
AUR62001036 Chenopodium quinoa HOM05D004754 ORTHO05D005566 2.8e-130 469.2 341 70.4
AUR62004920 Chenopodium quinoa HOM05D004754 ORTHO05D005566 1.8e-129 466.5 341 69.2
MBI10_g08558_MAGBIO Magnolia biondii HOM05D004754 ORTHO05D005566 5.3e-129 464.9 341 65.1
MBI09_g11913_MAGBIO Magnolia biondii HOM05D004754 ORTHO05D005566 1.2e-128 463.8 346 68.5
Ah.02g113940 Amaranthus hybridus HOM05D004754 ORTHO05D005566 5.8e-128 461.5 341 65.7
ECA240G2987 Erigeron canadensis HOM05D004754 ORTHO05D005566 7.6e-128 461.1 338 65.1
Sp6g03640 Schrenkiella parvula HOM05D004754 ORTHO05D005566 2.9e-127 459.1 341 64.5
CARHR252140 Cardamine hirsuta HOM05D004754 ORTHO05D005566 3.8e-127 458.8 334 66.2
SalBow6G1352 Salvia bowleyana HOM05D004754 ORTHO05D005566 8.4e-127 457.6 336 64.9
HanXRQChr12g0360561 Helianthus annuus HOM05D004754 ORTHO05D005566 5.5e-126 454.9 336 68.8
Carub.0006s3335 Capsella rubella HOM05D004754 ORTHO05D005566 1.6e-125 453.4 332 66.3
AL6G49030 Arabidopsis lyrata HOM05D004754 ORTHO05D005566 6.0e-125 451.4 341 64.5
Lsat_1_v5_gn_9_95240 Lactuca sativa HOM05D004754 ORTHO05D005566 1.8e-124 449.9 341 68.0
PGSC0003DMG400025770 Solanum tuberosum HOM05D004754 ORTHO05D005566 5.1e-124 448.4 316 68.0
GSVIVG01021588001 Vitis vinifera HOM05D004754 ORTHO05D005566 1.6e-122 443.4 341 66.6
AT4G05440 Arabidopsis thaliana HOM05D004754 ORTHO05D005566 6.2e-122 441.4 341 62.8
BcaB01g01919 Brassica carinata HOM05D004754 ORTHO05D005566 1.8e-121 439.9 333 68.5
Aqoxy7G03057 Aquilegia oxysepala HOM05D004754 ORTHO05D005566 3.1e-121 439.1 341 64.2
GSVIVG01027347001 Vitis vinifera HOM05D004754 ORTHO05D005566 6.9e-121 438.0 339 65.2
vmacro08577 Vaccinium macrocarpon HOM05D004754 ORTHO05D005566 2.6e-120 436.0 337 63.8
BcaC04g23945 Brassica carinata HOM05D004754 ORTHO05D005566 3.4e-120 435.6 333 62.2
C09p03030 Brassica napus HOM05D004754 ORTHO05D005566 4.5e-120 435.3 333 61.9
SGA_v2.0_scaffold172G38987 Striga asiatica HOM05D004754 ORTHO05D005566 1.0e-119 434.1 335 62.7
CDE02G1350 Ceratophyllum demersum HOM05D004754 ORTHO05D005566 5.0e-119 431.8 338 61.8
MD09G1087500 Malus domestica HOM05D004754 ORTHO05D005566 5.0e-119 431.8 341 63.0
unitig_21.g20734 Utricularia gibba HOM05D004754 ORTHO05D005566 2.1e-117 426.4 333 61.6
Thhalv10028820m.g Eutrema salsugineum HOM05D004754 ORTHO05D005566 6.1e-117 424.9 341 61.6
BraA09t35937Z Brassica rapa HOM05D004754 ORTHO05D005566 2.3e-116 422.9 334 65.3
BolC9t53233H Brassica oleracea HOM05D004754 ORTHO05D005566 6.7e-116 421.4 337 65.3
A09p02940 Brassica napus HOM05D004754 ORTHO05D005566 1.5e-115 420.2 334 65.6
HanXRQChr03g0076141 Helianthus annuus HOM05D004754 ORTHO05D005566 5.3e-113 411.8 321 63.6
Aa31LG9G9140 Aethionema arabicum HOM05D004754 ORTHO05D005566 3.4e-112 409.1 319 62.4
Lsat_1_v5_gn_9_95201 Lactuca sativa HOM05D004754 ORTHO05D005566 1.0e-108 397.5 330 64.5
RcHm_v2.0_Chr5g0052651 Rosa chinensis HOM05D004754 ORTHO05D005566 1.0e-108 397.5 292 66.8
PSO675G6933 Papaver somniferum HOM05D004754 ORTHO05D005566 2.8e-106 389.4 292 65.4
ATR0584G072 Amborella trichopoda HOM05D004754 ORTHO05D005566 1.2e-104 384.0 381 52.5
Medtr2g048690 Medicago truncatula HOM05D004754 ORTHO05D005566 4.2e-102 375.6 328 62.2
Sc12g0003000 Simmondsia chinensis HOM05D004754 ORTHO05D005566 2.7e-101 372.9 250 70.0
AUR62021582 Chenopodium quinoa HOM05D004754 ORTHO05D005566 1.4e-100 370.5 338 57.1
Actinidia13483 Actinidia chinensis HOM05D004754 ORTHO05D005566 1.0e-95 354.4 262 65.3
Atru.chr10.956 Acer truncatum HOM05D004754 ORTHO05D005566 9.1e-89 331.3 221 73.8
SMO144G0026 Selaginella moellendorffii HOM05D004754 ORTHO05D005566 4.2e-86 322.4 347 54.8
AL6G49110 Arabidopsis lyrata HOM05D004754 ORTHO05D005566 1.6e-85 320.5 280 57.1
Gohir.D13G114400 Gossypium hirsutum HOM05D004754 ORTHO05D005566 5.2e-84 315.5 213 72.3
AagrBONN_evm.TU.Sc2ySwM_228.5754 Anthoceros agrestis HOM05D004754 ORTHO05D005566 3.7e-82 309.3 339 47.2
AagrBONN_evm.TU.Sc2ySwM_344.1746 Anthoceros agrestis HOM05D004754 ORTHO05D005566 4.8e-82 308.9 389 44.7
SEGI_36860 Sequoiadendron giganteum HOM05D004754 ORTHO05D005566 1.2e-80 304.3 358 49.7
Pp3c20_22950 Physcomitrium patens HOM05D004754 ORTHO05D005566 1.0e-79 301.2 350 46.0
TPR.G5080 Trifolium pratense HOM05D004754 ORTHO05D005566 1.0e-79 301.2 155 92.9
Haze_09496 Corylus avellana HOM05D004754 ORTHO05D005566 1.4e-73 280.8 254 57.9
Zm00001eb126310 Zea mays HOM05D004754 ORTHO05D005566 1.4e-73 280.8 407 39.6
Sc10g0000250 Simmondsia chinensis HOM05D004754 ORTHO05D005566 2.3e-71 273.5 192 66.7
Mapoly0049s0079 Marchantia polymorpha HOM05D004754 ORTHO05D005566 1.2e-69 267.7 281 52.3
QL05p054023 Quercus lobata HOM05D004754 ORTHO05D005566 5.0e-55 219.2 184 58.2
CBR_g50844 Chara braunii HOM05D004754 ORTHO05D005566 1.1e-54 218.0 184 55.4
VMungo1309G1961 Vigna mungo HOM05D004754 ORTHO05D005566 6.8e-52 208.8 341 41.1
PRCOL_00002688 Prasinoderma coloniale HOM05D004754 ORTHO05D005566 2.2e-50 203.8 380 37.1
Migut.N02733 Erythranthe guttata HOM05D004754 ORTHO05D005566 1.1e-44 184.9 144 61.8
MCO03G595 Micromonas commoda HOM05D004754 ORTHO05D005566 2.6e-43 180.3 250 42.0
HanXRQChr04g0094771 Helianthus annuus HOM05D004754 ORTHO05D005566 3.7e-42 176.4 155 58.1
Medtr8g072370 Medicago truncatula HOM05D004754 ORTHO05D005566 8.4e-42 175.3 152 60.5
ECA234G3378 Erigeron canadensis HOM05D004754 ORTHO05D000282 1.1e-38 164.9 137 56.9
HanXRQChr11g0343411 Helianthus annuus HOM05D004754 ORTHO05D005566 1.4e-36 157.9 138 58.0
HanXRQChr11g0343421 Helianthus annuus HOM05D004754 ORTHO05D005566 1.4e-36 157.9 138 58.0
Glyma.02G261200 Glycine max HOM05D004754 ORTHO05D005566 2.0e-35 154.1 91 78.0
Glyma.02G261300 Glycine max HOM05D004754 ORTHO05D005566 4.9e-34 149.4 76 92.1
Psat5g233560 Pisum sativum HOM05D004754 ORTHO05D005566 3.2e-33 146.7 116 67.2
Cre07.g312100 Chlamydomonas reinhardtii HOM05D004754 ORTHO05D005566 2.4e-17 94.0 271 27.3
Lj6C128T1 Lonicera japonica HOM05D004754 ORTHO05D005566 1.6e-13 81.3 73 52.1
HPP92_027351 Vanilla planifolia HOM05D004754 ORTHO05D005566 4.8e-13 79.7 76 47.4
Lju897C0T7 Lonicera japonica HOM05D004754 ORTHO05D005566 3.4e-11 73.6 73 49.3
Potri.017G049500 Populus trichocarpa HOM05D004754 ORTHO05D005566 4.5e-11 73.2 39 82.1
Potri.006G050600 Populus trichocarpa HOM05D004754 ORTHO05D005566 4.6e-08 63.2 51 64.7
HPP92_027352 Vanilla planifolia HOM05D004754 ORTHO05D005566 6.0e-08 62.8 71 43.7
DCAR_004803 Daucus carota HOM05D019807 ORTHO05D005566 1.8e-07 61.2 34 79.4
Lju897C2T5 Lonicera japonica HOM05D004754 ORTHO05D005566 8.7e-07 58.9 65 43.1


User provided reference genes

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