Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G33209 Trifolium pratense HOM05D005965 ORTHO05D007283 1.3e-255 885.9 452 100.0
Medtr7g113100 Medicago truncatula HOM05D005965 ORTHO05D007283 1.6e-234 815.8 452 90.5
Psat0s4314g0040 Pisum sativum HOM05D005965 ORTHO05D007283 6.1e-234 813.9 476 87.4
Lj1g0019406 Lotus japonicus HOM05D005965 ORTHO05D007283 2.1e-218 762.3 450 83.8
Lalb_Chr18g0045721 Lupinus albus HOM05D005965 ORTHO05D007283 1.6e-205 719.5 452 79.4
arahy.Tifrunner.gnm1.ann1.79NSX3 Arachis hypogaea HOM05D005965 ORTHO05D007283 7.8e-205 717.2 428 82.7
arahy.Tifrunner.gnm1.ann1.DHC6FB Arachis hypogaea HOM05D005965 ORTHO05D007283 1.3e-204 716.5 428 82.7
Glyma.19G233800 Glycine max HOM05D005965 ORTHO05D007283 9.8e-200 700.3 453 79.7
Ca_05803_v3 Cicer arietinum L. HOM05D005965 ORTHO05D007283 8.3e-199 697.2 410 87.1
Glyma.03G236100 Glycine max HOM05D005965 ORTHO05D007283 1.4e-198 696.4 453 80.1
VMungo0540G0496 Vigna mungo HOM05D005965 ORTHO05D007283 5.4e-198 694.5 453 79.9
Phvul.006G090000 Phaseolus vulgaris HOM05D005965 ORTHO05D007283 5.2e-185 651.4 455 76.3
Cfa006624 Carpinus fangiana HOM05D005965 ORTHO05D007283 2.1e-178 629.4 456 71.5
CiPaw.07G021000 Carya illinoinensis HOM05D005965 ORTHO05D007283 3.6e-178 628.6 450 69.3
MD04G1201200 Malus domestica HOM05D005965 ORTHO05D007283 6.8e-177 624.4 452 69.2
QL03p021207 Quercus lobata HOM05D005965 ORTHO05D007283 1.1e-174 617.1 454 70.0
Atru.chr2.26 Acer truncatum HOM05D005965 ORTHO05D007283 1.4e-174 616.7 452 69.5
GSVIVG01031150001 Vitis vinifera HOM05D005965 ORTHO05D007283 1.4e-174 616.7 449 69.9
Prupe.6G321300 Prunus persica HOM05D005965 ORTHO05D007283 7.8e-173 610.9 452 67.3
Gohir.D11G277600 Gossypium hirsutum HOM05D005965 ORTHO05D007283 2.0e-168 596.3 453 67.1
RcHm_v2.0_Chr3g0455661 Rosa chinensis HOM05D005965 ORTHO05D007283 4.9e-167 591.7 452 66.8
Actinidia21493 Actinidia chinensis HOM05D005965 ORTHO05D007283 8.4e-167 590.9 451 66.1
TWI12G0462 Tripterygium wilfordii HOM05D005965 ORTHO05D007283 8.4e-167 590.9 452 67.5
Gorai.007G299800 Gossypium raimondii HOM05D005965 ORTHO05D007283 2.4e-166 589.3 459 66.2
FAN14G0885 Fragaria x ananassa HOM05D005965 ORTHO05D007283 1.2e-165 587.0 452 66.4
CSS0001755 Camellia sinensis var. sinensis HOM05D005965 ORTHO05D007283 2.7e-165 585.9 450 66.0
Sabra13G0016500 Salix brachista HOM05D005965 ORTHO05D007283 6.0e-165 584.7 456 66.7
TAR362G0609 Trochodendron aralioides HOM05D005965 ORTHO05D007283 5.1e-164 581.6 452 66.8
Potri.013G017500 Populus trichocarpa HOM05D005965 ORTHO05D007283 2.5e-163 579.3 455 67.5
Ciclev10001128m.g Citrus clementina HOM05D005965 ORTHO05D007283 3.3e-163 578.9 452 65.9
FAN02G0246 Fragaria x ananassa HOM05D005965 ORTHO05D007283 3.6e-162 575.5 453 65.3
Cpa.g.sc48.91 Carica papaya HOM05D005965 ORTHO05D007283 4.8e-162 575.1 452 66.6
Aqoxy2G02987 Aquilegia oxysepala HOM05D005965 ORTHO05D007283 8.1e-162 574.3 449 67.5
Sabra13G0020500 Salix brachista HOM05D005965 ORTHO05D007283 2.4e-161 572.8 427 67.4
Sed0024378 Sechium edule HOM05D005965 ORTHO05D007283 6.9e-161 571.2 457 66.3
ClCG02G015450 Citrullus lanatus HOM05D005965 ORTHO05D007283 4.5e-160 568.5 454 67.0
Manes.08G118100 Manihot esculenta HOM05D005965 ORTHO05D007283 2.2e-159 566.2 452 66.4
CsaV3_2G006620 Cucumis sativus L. HOM05D005965 ORTHO05D007283 4.9e-159 565.1 456 66.0
Sc16g0008610 Simmondsia chinensis HOM05D005965 ORTHO05D007283 1.4e-158 563.5 449 64.4
Gohir.A11G267700 Gossypium hirsutum HOM05D005965 ORTHO05D007283 7.1e-158 561.2 453 64.5
DCAR_003352 Daucus carota HOM05D005965 ORTHO05D007283 3.0e-156 555.8 472 61.4
Nn3g21434 Nelumbo nucifera HOM05D005965 ORTHO05D007283 3.9e-156 555.4 449 63.7
Oeu043357.2 Olea europaea HOM05D005965 ORTHO05D007283 1.1e-155 553.9 450 62.9
PGR031G2641 Punica granatum HOM05D005965 ORTHO05D007283 2.5e-155 552.7 452 63.1
Rhsim05G0139400 Rhododendron simsii HOM05D005965 ORTHO05D007283 7.4e-155 551.2 490 60.2
MSTRG.20421 Avicennia marina HOM05D005965 ORTHO05D007283 9.6e-155 550.8 447 63.8
Eucgr.H04531 Eucalyptus grandis HOM05D005965 ORTHO05D007283 9.6e-155 550.8 452 62.4
COL.COLO4_10514 Corchorus olitorius HOM05D005965 ORTHO05D007283 1.6e-154 550.1 408 68.6
PGSC0003DMG400007478 Solanum tuberosum HOM05D005965 ORTHO05D007283 3.7e-154 548.9 448 62.9
Peaxi162Scf00949g00112 Petunia axillaris HOM05D005965 ORTHO05D007283 8.1e-154 547.7 448 63.6
Hund07094 Selenicereus undatus HOM05D005965 ORTHO05D007283 1.4e-153 547.0 461 64.0
Solyc10g044780.2 Solanum lycopersicum HOM05D005965 ORTHO05D007283 1.8e-153 546.6 448 62.5
Sopen10g013470 Solanum pennellii HOM05D005965 ORTHO05D007283 1.8e-153 546.6 448 62.5
PSO151G0070 Papaver somniferum HOM05D005965 ORTHO05D007283 2.4e-153 546.2 450 64.7
Thhalv10020753m.g Eutrema salsugineum HOM05D005965 ORTHO05D007283 6.9e-153 544.7 451 62.3
THA.LOC104818713 Tarenaya hassleriana HOM05D005965 ORTHO05D007283 2.2e-151 539.7 456 61.8
EL10Ac4g09921 Beta vulgaris HOM05D005965 ORTHO05D007283 3.5e-149 532.3 453 61.6
CAN.G1.32 Capsicum annuum HOM05D005965 ORTHO05D007283 4.6e-149 531.9 448 61.2
Ah.04g161100 Amaranthus hybridus HOM05D005965 ORTHO05D007283 6.0e-149 531.6 457 63.0
Carub.0003s0477 Capsella rubella HOM05D005965 ORTHO05D007283 7.9e-149 531.2 451 61.2
AL3G16080 Arabidopsis lyrata HOM05D005965 ORTHO05D007283 1.0e-148 530.8 452 60.4
ECA246G4331 Erigeron canadensis HOM05D005965 ORTHO05D007283 1.0e-148 530.8 454 64.1
Cc02_g33090 Coffea canephora HOM05D005965 ORTHO05D007283 1.3e-148 530.4 451 63.0
FvH4_6g06510 Fragaria vesca HOM05D005965 ORTHO05D007283 1.3e-148 530.4 390 69.7
FAN05G3147 Fragaria x ananassa HOM05D005965 ORTHO05D007283 2.3e-148 529.6 390 69.7
AT3G05480 Arabidopsis thaliana HOM05D005965 ORTHO05D007283 3.0e-148 529.3 452 60.8
Dinv40342 Davidia involucrata HOM05D005965 ORTHO05D007283 8.7e-148 527.7 348 75.0
BcaC05g30118 Brassica carinata HOM05D005965 ORTHO05D007283 3.3e-147 525.8 451 60.5
Nitab4.5_0001129g0130 Nicotiana tabacum HOM05D005965 ORTHO05D007283 1.3e-146 523.9 461 63.1
C05p61750 Brassica napus HOM05D005965 ORTHO05D007283 8.2e-146 521.2 453 60.7
Migut.G01001 Erythranthe guttata HOM05D005965 ORTHO05D007283 1.8e-145 520.0 449 60.4
Hma1.2p1_1292F.1_g273670 Hydrangea macrophylla HOM05D005965 ORTHO05D007283 2.0e-144 516.5 340 75.9
HanXRQChr03g0072671 Helianthus annuus HOM05D005965 ORTHO05D007283 4.5e-144 515.4 455 62.2
Sp3g04310 Schrenkiella parvula HOM05D005965 ORTHO05D007283 4.5e-144 515.4 451 59.6
MBI19_g29225_MAGBIO Magnolia biondii HOM05D005965 ORTHO05D007283 4.9e-143 511.9 447 60.9
Lj9A144T46 Lonicera japonica HOM05D005965 ORTHO05D007283 9.3e-142 507.7 338 74.9
BolC5t34833H Brassica oleracea HOM05D005965 ORTHO05D007283 1.2e-141 507.3 468 58.1
HanXRQChr03g0072661 Helianthus annuus HOM05D005965 ORTHO05D007283 2.1e-141 506.5 478 59.2
Aa31LG5G15920 Aethionema arabicum HOM05D005965 ORTHO05D007283 7.9e-141 504.6 503 57.1
BcaC05g30164 Brassica carinata HOM05D005965 ORTHO05D007283 1.0e-140 504.2 477 57.0
Eucgr.H04558 Eucalyptus grandis HOM05D005965 ORTHO05D007283 3.1e-137 492.7 390 64.4
vmacro19747 Vaccinium macrocarpon HOM05D005965 ORTHO05D007283 4.1e-137 492.3 416 61.1
Hma1.2p1_1292F.1_g273680 Hydrangea macrophylla HOM05D005965 ORTHO05D007283 2.9e-135 486.1 336 73.2
Thecc.05G312500 Theobroma cacao HOM05D005965 ORTHO05D007283 8.5e-135 484.6 372 68.8
unitig_699.g19668 Utricularia gibba HOM05D005965 ORTHO05D007283 4.2e-134 482.3 447 57.3
AUR62000770 Chenopodium quinoa HOM05D005965 ORTHO05D007283 9.4e-134 481.1 409 64.8
Migut.G01092 Erythranthe guttata HOM05D005965 ORTHO05D007283 1.6e-133 480.3 339 70.2
SGA_v2.0_scaffold172G38992 Striga asiatica HOM05D005965 ORTHO05D007283 4.1e-129 465.7 469 54.4
Lsat_1_v5_gn_9_124801 Lactuca sativa HOM05D005965 ORTHO05D007283 6.9e-129 464.9 466 55.2
HPP92_000403 Vanilla planifolia HOM05D005965 ORTHO05D007283 2.5e-126 456.4 460 56.5
HPP92_000400 Vanilla planifolia HOM05D005965 ORTHO05D007283 7.2e-126 454.9 467 56.5
ATR0796G244 Amborella trichopoda HOM05D005965 ORTHO05D007283 6.1e-125 451.8 463 53.8
Haze_04145 Corylus avellana HOM05D005965 ORTHO05D007283 9.1e-121 438.0 255 82.4
SHI18108 Sapria himalayana HOM05D005965 ORTHO05D007283 6.1e-117 425.2 297 71.4
Migut.G01320 Erythranthe guttata HOM05D005965 ORTHO05D007283 1.0e-116 424.5 340 64.1
AUR62005199 Chenopodium quinoa HOM05D005965 ORTHO05D007283 2.0e-115 420.2 407 56.5
MELO3C031536.2 Cucumis melo HOM05D005965 ORTHO05D007283 1.7e-114 417.2 377 59.7
BraA05t23035Z Brassica rapa HOM05D005965 ORTHO05D007283 3.7e-114 416.0 363 60.1
SEGI_33282 Sequoiadendron giganteum HOM05D005965 ORTHO05D007283 1.3e-111 407.5 475 47.8
Os03g0345100 Oryza sativa ssp. japonica HOM05D005965 ORTHO05D007283 5.2e-108 395.6 462 49.6
CARHR079860 Cardamine hirsuta HOM05D005965 ORTHO05D007283 2.6e-107 393.3 255 72.9
Eucgr.H04576 Eucalyptus grandis HOM05D005965 ORTHO05D007283 2.8e-106 389.8 252 73.8
Eucgr.H04573 Eucalyptus grandis HOM05D005965 ORTHO05D007283 8.5e-103 378.3 278 66.9
Nitab4.5_0001057g0090 Nicotiana tabacum HOM05D005965 ORTHO05D007283 2.1e-101 373.6 357 59.7
CDE02G1352 Ceratophyllum demersum HOM05D005965 ORTHO05D007283 1.0e-100 371.3 359 52.9
Mapoly0078s0014 Marchantia polymorpha HOM05D005965 ORTHO05D007283 1.8e-97 360.5 349 54.4
Eucgr.H04556 Eucalyptus grandis HOM05D005965 ORTHO05D007283 1.2e-96 357.8 310 61.9
SMO134G0282 Selaginella moellendorffii HOM05D005965 ORTHO05D007283 1.5e-91 340.9 343 51.9
Pp3c15_2650 Physcomitrium patens HOM05D005965 ORTHO05D007283 1.7e-90 337.4 361 50.1
Pp3c7_570 Physcomitrium patens HOM05D005965 ORTHO05D007283 2.2e-90 337.0 377 46.2
BraA05t19070Z Brassica rapa HOM05D005965 ORTHO05D007283 2.7e-88 330.1 243 65.4
SHI32441 Sapria himalayana HOM05D005965 ORTHO05D007283 3.6e-85 319.7 294 58.8
CBR_g180 Chara braunii HOM05D005965 ORTHO05D007283 6.8e-84 315.5 378 46.8
Zm00001eb016590 Zea mays HOM05D005965 ORTHO05D007283 7.5e-83 312.0 339 51.9
Psat6g098120 Pisum sativum HOM05D005965 ORTHO05D007283 2.7e-80 303.5 163 89.0
Eucgr.H04569 Eucalyptus grandis HOM05D005965 ORTHO05D007283 7.8e-72 275.4 454 41.4
Eucgr.H04571 Eucalyptus grandis HOM05D005965 ORTHO05D007283 8.9e-68 261.9 392 42.1
Thecc.07G184800 Theobroma cacao HOM05D005965 ORTHO05D007283 4.3e-54 216.5 234 53.8
AL3G16050 Arabidopsis lyrata HOM05D005965 ORTHO05D007283 5.3e-52 209.5 261 43.7
Thhalv10022144m.g Eutrema salsugineum HOM05D005965 ORTHO05D007283 9.6e-46 188.7 295 42.7
Thecc.07G184700 Theobroma cacao HOM05D005965 ORTHO05D007283 9.0e-44 182.2 194 53.6
QL03p021253 Quercus lobata HOM05D005965 ORTHO05D007283 5.3e-36 156.4 93 76.3
PSO017G4250 Papaver somniferum HOM05D005965 ORTHO05D007283 1.9e-33 147.9 125 60.0
MCO01G074 Micromonas commoda HOM05D005965 ORTHO05D007283 9.3e-33 145.6 340 31.5
Haze_04144 Corylus avellana HOM05D005965 ORTHO05D007283 3.5e-32 143.7 138 60.1
CARHR079870 Cardamine hirsuta HOM05D005965 ORTHO05D007283 5.1e-31 139.8 197 42.6
TAR633G2454 Trochodendron aralioides HOM05D005965 ORTHO05D007283 1.3e-29 135.2 134 56.0
Eucgr.H04575 Eucalyptus grandis HOM05D005965 ORTHO05D007283 1.9e-25 121.3 128 50.8
DCAR_023086 Daucus carota HOM05D007620 ORTHO05D009568 1.0e-23 115.5 60 83.3
Cre16.g682950 Chlamydomonas reinhardtii HOM05D005965 ORTHO05D007283 2.5e-22 110.9 179 33.5
TWI56G1489 Tripterygium wilfordii HOM05D005965 ORTHO05D007283 1.5e-14 85.1 73 61.6
Nitab4.5_0000524g0030 Nicotiana tabacum HOM05D005965 ORTHO05D007283 1.8e-12 78.2 80 55.0
SMO274G0013 Selaginella moellendorffii HOM05D005965 ORTHO05D376736 2.6e-06 57.8 120 40.0


User provided reference genes

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