Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G33208 Trifolium pratense HOM05D005768 ORTHO05D007100 7.8e-106 387.1 192 100.0
Psat0s1830g0160 Pisum sativum HOM05D005768 ORTHO05D007100 1.7e-92 342.8 192 87.0
Psat0s1830g0280 Pisum sativum HOM05D005768 ORTHO05D007100 7.8e-90 334.0 192 84.9
TPR.G29192 Trifolium pratense HOM05D005768 ORTHO05D007100 2.8e-87 325.5 169 94.1
Glyma.19G233100 Glycine max HOM05D005768 ORTHO05D007100 7.6e-85 317.4 193 83.4
Medtr7g112710 Medicago truncatula HOM05D005768 ORTHO05D007100 1.6e-82 309.7 169 89.3
Lj1g0020400 Lotus japonicus HOM05D005768 ORTHO05D007100 8.7e-81 303.9 193 80.3
Phvul.006G089400 Phaseolus vulgaris HOM05D005768 ORTHO05D007100 1.3e-79 300.1 193 78.2
Lalb_Chr08g0242881 Lupinus albus HOM05D005768 ORTHO05D007100 3.9e-73 278.5 179 77.1
Lalb_Chr24g0397251 Lupinus albus HOM05D005768 ORTHO05D007100 5.1e-73 278.1 192 74.0
arahy.Tifrunner.gnm1.ann1.FJ9VJT Arachis hypogaea HOM05D005768 ORTHO05D007100 1.2e-66 256.9 207 65.7
Atru.chr4.1221 Acer truncatum HOM05D005768 ORTHO05D007100 2.2e-63 246.1 199 65.3
CiPaw.07G201500 Carya illinoinensis HOM05D005768 ORTHO05D007100 9.0e-62 240.7 181 69.6
Ciclev10022280m.g Citrus clementina HOM05D005768 ORTHO05D007100 1.2e-61 240.4 199 64.8
Manes.02G043100 Manihot esculenta HOM05D005768 ORTHO05D007100 4.5e-61 238.4 179 67.0
Atru.chr7.2675 Acer truncatum HOM05D005768 ORTHO05D007100 1.0e-60 237.3 190 65.8
CANSAT56G2391 Cannabis sativa HOM05D005768 ORTHO05D007100 4.2e-59 231.9 180 65.0
GSVIVG01035325001 Vitis vinifera HOM05D005768 ORTHO05D007100 2.7e-58 229.2 184 65.2
TWI63G1351 Tripterygium wilfordii HOM05D005768 ORTHO05D007100 3.6e-58 228.8 174 64.9
MD08G1109000 Malus domestica HOM05D005768 ORTHO05D007100 1.0e-57 227.3 185 64.9
TWI34G0524 Tripterygium wilfordii HOM05D005768 ORTHO05D007100 2.3e-57 226.1 160 68.8
Dinv27944 Davidia involucrata HOM05D005768 ORTHO05D007100 3.9e-57 225.3 188 61.7
FAN20G2834 Fragaria x ananassa HOM05D005768 ORTHO05D007100 5.1e-57 224.9 176 62.5
Thecc.09G049100 Theobroma cacao HOM05D005768 ORTHO05D007100 5.1e-57 224.9 180 66.1
Ca_05797_v3 Cicer arietinum L. HOM05D001134 ORTHO05D001035 8.8e-57 224.2 126 88.1
Duzib168G0475 Durio zibethinus HOM05D005768 ORTHO05D007100 5.7e-56 221.5 180 64.4
RcHm_v2.0_Chr6g0306801 Rosa chinensis HOM05D005768 ORTHO05D007100 5.7e-56 221.5 179 62.0
CSS0002565 Camellia sinensis var. sinensis HOM05D005768 ORTHO05D007100 2.8e-55 219.2 198 59.6
COL.COLO4_21009 Corchorus olitorius HOM05D005768 ORTHO05D007100 8.2e-55 217.6 180 63.9
FAN27G1715 Fragaria x ananassa HOM05D005768 ORTHO05D007100 1.4e-54 216.9 179 60.9
Prupe.1G443600 Prunus persica HOM05D005768 ORTHO05D007100 1.4e-54 216.9 190 61.1
Hma1.2p1_0603F.1_g187720 Hydrangea macrophylla HOM05D005768 ORTHO05D007100 1.8e-54 216.5 166 63.9
Migut.A00171 Erythranthe guttata HOM05D005768 ORTHO05D007100 2.4e-54 216.1 177 59.9
Gohir.D07G024000 Gossypium hirsutum HOM05D005768 ORTHO05D007100 4.1e-54 215.3 179 64.8
Gorai.001G024700 Gossypium raimondii HOM05D005768 ORTHO05D007100 4.1e-54 215.3 179 64.8
Aqoxy5G03966 Aquilegia oxysepala HOM05D005768 ORTHO05D007100 2.6e-53 212.6 165 63.0
Cpa.g.sc1868.1 Carica papaya HOM05D005768 ORTHO05D007100 2.6e-53 212.6 188 61.7
Cc00_g09250 Coffea canephora HOM05D005768 ORTHO05D007100 2.6e-53 212.6 181 60.2
QL12p040865 Quercus lobata HOM05D005768 ORTHO05D007100 2.6e-53 212.6 264 47.0
TAR383G0888 Trochodendron aralioides HOM05D005768 ORTHO05D007100 3.8e-52 208.8 163 67.5
TAR624G0371 Trochodendron aralioides HOM05D005768 ORTHO05D007100 3.8e-52 208.8 162 66.0
MELO3C003477.2 Cucumis melo HOM05D005768 ORTHO05D007100 5.0e-52 208.4 185 59.5
HanXRQChr03g0078001 Helianthus annuus HOM05D005768 ORTHO05D007100 5.0e-52 208.4 175 62.3
Hma1.2p1_0442F.1_g153950 Hydrangea macrophylla HOM05D005768 ORTHO05D007100 5.0e-52 208.4 196 56.6
Actinidia18208 Actinidia chinensis HOM05D005768 ORTHO05D007100 6.5e-52 208.0 188 60.1
EL10Ac5g12654 Beta vulgaris HOM05D005768 ORTHO05D007100 8.5e-52 207.6 172 62.2
Haze_01966 Corylus avellana HOM05D005768 ORTHO05D007100 8.5e-52 207.6 142 73.2
PSO832G3354 Papaver somniferum HOM05D005768 ORTHO05D007100 1.1e-51 207.2 165 64.2
Eucgr.C02988 Eucalyptus grandis HOM05D005768 ORTHO05D007100 1.9e-51 206.5 199 57.3
PSO063G0290 Papaver somniferum HOM05D005768 ORTHO05D007100 2.5e-51 206.1 188 59.0
Ah.02g116310 Amaranthus hybridus HOM05D005768 ORTHO05D007100 4.2e-51 205.3 185 58.9
CsaV3_3G048420 Cucumis sativus L. HOM05D005768 ORTHO05D007100 4.2e-51 205.3 185 58.4
Sed0022019 Sechium edule HOM05D005768 ORTHO05D007100 5.5e-51 204.9 185 60.0
Potri.006G234800 Populus trichocarpa HOM05D005768 ORTHO05D007100 9.4e-51 204.1 201 57.7
PSO832G1534 Papaver somniferum HOM05D005768 ORTHO05D007100 2.1e-50 203.0 187 59.4
vmacro07473 Vaccinium macrocarpon HOM05D005768 ORTHO05D007100 2.1e-50 203.0 181 61.9
Rhsim07G0145000 Rhododendron simsii HOM05D005768 ORTHO05D007100 3.6e-50 202.2 189 59.3
Sabra06G0183200 Salix brachista HOM05D005768 ORTHO05D007100 3.6e-50 202.2 202 58.9
AUR62017359 Chenopodium quinoa HOM05D005768 ORTHO05D007100 5.1e-49 198.4 188 56.4
Nn6g34840 Nelumbo nucifera HOM05D005768 ORTHO05D007100 5.1e-49 198.4 168 62.5
Lsat_1_v5_gn_3_56860 Lactuca sativa HOM05D005768 ORTHO05D007100 1.1e-48 197.2 154 63.0
PSO063G1479 Papaver somniferum HOM05D005768 ORTHO05D007100 1.5e-48 196.8 190 56.3
PSO063G2632 Papaver somniferum HOM05D005768 ORTHO05D007100 1.5e-48 196.8 190 56.3
PSO063G5891 Papaver somniferum HOM05D005768 ORTHO05D007100 1.5e-48 196.8 190 56.3
PGR044G0118 Punica granatum HOM05D005768 ORTHO05D007100 2.0e-48 196.4 183 57.4
THA.LOC104812009 Tarenaya hassleriana HOM05D005768 ORTHO05D007100 2.0e-48 196.4 183 56.3
Sed0000338 Sechium edule HOM05D005768 ORTHO05D007100 3.3e-48 195.7 185 57.8
Glyma.03G235400 Glycine max HOM05D005768 ORTHO05D007100 7.4e-48 194.5 143 73.4
Sopen08g019690 Solanum pennellii HOM05D005768 ORTHO05D007100 1.3e-47 193.7 181 54.1
SGA_v2.0_scaffold103G30048 Striga asiatica HOM05D005768 ORTHO05D007100 1.7e-47 193.4 167 62.3
Solyc08g066030.3 Solanum lycopersicum HOM05D005768 ORTHO05D007100 2.2e-47 193.0 181 54.1
Aa31LG7G5050 Aethionema arabicum HOM05D005768 ORTHO05D007100 1.1e-46 190.7 186 54.3
AT1G76480 Arabidopsis thaliana HOM05D005768 ORTHO05D007100 1.1e-46 190.7 186 55.9
SalBow6G5216 Salvia bowleyana HOM05D005768 ORTHO05D007100 2.4e-46 189.5 174 57.5
AUR62010536 Chenopodium quinoa HOM05D005768 ORTHO05D007100 3.1e-46 189.1 165 58.8
PGSC0003DMG401025462 Solanum tuberosum HOM05D005768 ORTHO05D007100 5.3e-46 188.3 163 59.5
Aqoxy7G01356 Aquilegia oxysepala HOM05D005768 ORTHO05D007100 2.6e-45 186.0 182 51.6
FAN15G1520 Fragaria x ananassa HOM05D005768 ORTHO05D007100 5.9e-45 184.9 155 60.6
AL1G33910 Arabidopsis lyrata HOM05D005768 ORTHO05D007100 1.0e-44 184.1 181 55.8
Sp1g18590 Schrenkiella parvula HOM05D005768 ORTHO05D007100 1.0e-44 184.1 183 55.2
AT1G20890 Arabidopsis thaliana HOM05D005768 ORTHO05D007100 1.7e-44 183.3 182 56.6
MSTRG.25924 Avicennia marina HOM05D005768 ORTHO05D007100 1.7e-44 183.3 162 57.4
BcaB07g32084 Brassica carinata HOM05D005768 ORTHO05D007100 1.7e-44 183.3 182 57.1
Sc09g0009490 Simmondsia chinensis HOM05D005768 ORTHO05D007100 1.7e-44 183.3 194 53.1
CARHR021320 Cardamine hirsuta HOM05D005768 ORTHO05D007100 3.8e-44 182.2 182 53.8
Gohir.A07G022184 Gossypium hirsutum HOM05D005768 ORTHO05D007100 3.8e-44 182.2 138 70.3
BcaB03g14295 Brassica carinata HOM05D005768 ORTHO05D007100 5.0e-44 181.8 180 55.0
A07p15420 Brassica napus HOM05D005768 ORTHO05D007100 5.0e-44 181.8 179 55.9
Thhalv10008823m.g Eutrema salsugineum HOM05D005768 ORTHO05D007100 8.5e-44 181.0 185 54.1
Peaxi162Scf00699g00655 Petunia axillaris HOM05D005768 ORTHO05D007100 1.4e-43 180.3 152 60.5
Nitab4.5_0000318g0060 Nicotiana tabacum HOM05D005768 ORTHO05D007100 2.5e-43 179.5 155 59.4
Carub.0001s2036 Capsella rubella HOM05D005768 ORTHO05D007100 7.2e-43 177.9 182 53.8
BcaC06g34845 Brassica carinata HOM05D005768 ORTHO05D007100 1.6e-42 176.8 179 54.7
ECA234G0765 Erigeron canadensis HOM05D000185 ORTHO05D000105 3.6e-42 175.6 151 60.9
unitig_0.g2567 Utricularia gibba HOM05D005768 ORTHO05D007100 8.0e-42 174.5 159 58.5
vmacro05269 Vaccinium macrocarpon HOM05D005768 ORTHO05D007100 8.0e-42 174.5 167 56.3
Os03g0804100 Oryza sativa ssp. japonica HOM05D005768 ORTHO05D007100 8.8e-41 171.0 179 51.4
Nitab4.5_0002021g0070 Nicotiana tabacum HOM05D005768 ORTHO05D007100 1.1e-38 164.1 144 58.3
SEGI_27706 Sequoiadendron giganteum HOM05D005768 ORTHO05D007100 1.1e-38 164.1 172 53.5
PSO832G4156 Papaver somniferum HOM05D005768 ORTHO05D007100 3.1e-38 162.5 147 60.5
Os08g0374900 Oryza sativa ssp. japonica HOM05D005768 ORTHO05D007100 5.3e-38 161.8 176 48.9
Zm00001eb061390 Zea mays HOM05D005768 ORTHO05D007100 1.6e-37 160.2 176 49.4
Lj7A696G17 Lonicera japonica HOM05D005768 ORTHO05D007100 1.2e-34 150.6 187 51.3
Hund19578 Selenicereus undatus HOM05D005768 ORTHO05D007100 3.6e-34 149.1 114 64.9
AL2G36620 Arabidopsis lyrata HOM05D005768 ORTHO05D007100 4.7e-34 148.7 179 49.7
PSO063G4631 Papaver somniferum HOM05D005768 ORTHO05D007100 1.4e-33 147.1 144 56.2
Oeu033885.1 Olea europaea HOM05D005768 ORTHO05D007100 7.5e-32 141.4 117 65.0
ClCG02G014210 Citrullus lanatus HOM05D005768 ORTHO05D007100 4.8e-31 138.7 130 57.7
BolC7t42805H Brassica oleracea HOM05D005768 ORTHO05D007100 1.4e-30 137.1 137 54.0
ATR0693G003 Amborella trichopoda HOM05D005768 ORTHO05D007100 2.4e-30 136.3 155 49.7
C07p22730 Brassica napus HOM05D005768 ORTHO05D007100 2.4e-30 136.3 137 54.7
MBI02_g46987_MAGBIO Magnolia biondii HOM05D005768 ORTHO05D007100 1.2e-29 134.0 113 65.5
BraA06t24798Z Brassica rapa HOM05D005768 ORTHO05D007100 3.5e-29 132.5 182 45.6
FvH4_2g35150 Fragaria vesca HOM05D005768 ORTHO05D007100 7.7e-29 131.3 105 61.0
A06p16890 Brassica napus HOM05D005768 ORTHO05D007100 5.0e-28 128.6 144 53.5
Mapoly0062s0068 Marchantia polymorpha HOM05D005768 ORTHO05D007100 1.9e-27 126.7 164 44.5
C05p19520 Brassica napus HOM05D005768 ORTHO05D007100 7.2e-27 124.8 178 47.2
BolC5t30654H Brassica oleracea HOM05D005768 ORTHO05D007100 7.2e-27 124.8 178 47.2
Pp3c24_1520 Physcomitrium patens HOM05D005768 ORTHO05D007100 1.2e-26 124.0 159 40.9
Thhalv10019630m.g Eutrema salsugineum HOM05D005768 ORTHO05D007100 8.0e-26 121.3 134 52.2
HPP92_009604 Vanilla planifolia HOM05D005768 ORTHO05D007100 8.8e-25 117.9 109 56.0
MBI02_g46884_MAGBIO Magnolia biondii HOM05D000614 ORTHO05D007100 1.2e-24 117.5 117 58.1
CDE02G0943 Ceratophyllum demersum HOM05D005768 ORTHO05D007100 2.4e-22 109.8 94 56.4
Sc09g0009510 Simmondsia chinensis HOM05D005768 ORTHO05D007100 2.8e-18 96.3 69 66.7
HanXRQChr14g0439211 Helianthus annuus HOM05D005768 ORTHO05D007100 5.2e-17 92.0 87 56.3
SalBow4G3076 Salvia bowleyana HOM05D005768 ORTHO05D007100 5.2e-17 92.0 83 55.4
Cre12.g547734 Chlamydomonas reinhardtii HOM05D005768 ORTHO05D007100 4.5e-13 79.0 149 36.2
Oeu002722.1 Olea europaea HOM05D005768 ORTHO05D007100 2.3e-12 76.6 65 58.5
DCAR_003074 Daucus carota HOM05D001613 ORTHO05D001556 1.2e-10 70.9 74 56.8
ClCG11G015010 Citrullus lanatus HOM05D005768 ORTHO05D007100 3.1e-09 66.2 97 46.4
SEGI_03586 Sequoiadendron giganteum HOM05D005768 ORTHO05D007100 3.1e-09 66.2 44 68.2
CBR_g130 Chara braunii HOM05D000019 ORTHO05D000002 7.5e-08 61.6 93 36.6
MCO02G048 Micromonas commoda HOM05D005768 ORTHO05D007100 1.1e-06 57.8 163 27.0
BcaC05g25998 Brassica carinata HOM05D005768 ORTHO05D007100 2.4e-06 56.6 63 47.6
Sc09g0009520 Simmondsia chinensis HOM05D005768 ORTHO05D007100 5.4e-06 55.5 65 41.5


User provided reference genes

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