Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G33191 Trifolium pratense HOM05D005736 ORTHO05D007215 1.6e-191 672.5 329 100.0
Medtr7g112700 Medicago truncatula HOM05D005736 ORTHO05D007215 5.2e-166 587.8 305 93.1
Glyma.03G235500 Glycine max HOM05D005736 ORTHO05D007215 1.5e-157 559.7 305 88.2
Glyma.19G233300 Glycine max HOM05D005736 ORTHO05D007215 2.8e-156 555.4 303 88.8
Phvul.006G089500 Phaseolus vulgaris HOM05D005736 ORTHO05D007215 1.1e-155 553.5 305 87.9
arahy.Tifrunner.gnm1.ann1.7HV2PX Arachis hypogaea HOM05D005736 ORTHO05D007215 9.1e-155 550.4 303 86.1
Lalb_Chr15g0077351 Lupinus albus HOM05D005736 ORTHO05D007215 5.9e-154 547.7 308 86.4
Lj1g0012360 Lotus japonicus HOM05D005736 ORTHO05D007215 8.6e-153 543.9 303 86.1
arahy.Tifrunner.gnm1.ann1.B5Q7D5 Arachis hypogaea HOM05D005736 ORTHO05D007215 1.9e-152 542.7 304 85.5
VMungo0540G0827 Vigna mungo HOM05D005736 ORTHO05D007215 8.0e-151 537.3 305 84.6
QL03p020205 Quercus lobata HOM05D005736 ORTHO05D007215 2.6e-141 505.8 300 79.3
CANSAT54G0716 Cannabis sativa HOM05D005736 ORTHO05D007215 9.8e-141 503.8 300 79.3
CiPaw.07G021500 Carya illinoinensis HOM05D005736 ORTHO05D007215 9.8e-141 503.8 300 79.7
Duzib106G0969 Durio zibethinus HOM05D005736 ORTHO05D007215 1.3e-140 503.4 301 78.1
Haze_04138 Corylus avellana HOM05D005736 ORTHO05D007215 3.7e-140 501.9 300 78.7
GSVIVG01031141001 Vitis vinifera HOM05D005736 ORTHO05D007215 3.7e-140 501.9 296 78.0
COL.COLO4_10521 Corchorus olitorius HOM05D005736 ORTHO05D007215 8.3e-140 500.7 301 78.1
TAR633G1366 Trochodendron aralioides HOM05D005736 ORTHO05D007215 1.1e-139 500.4 308 76.9
MD12G1212900 Malus domestica HOM05D005736 ORTHO05D007215 1.8e-139 499.6 302 78.8
PGR031G0613 Punica granatum HOM05D005736 ORTHO05D007215 2.4e-139 499.2 308 77.9
Potri.013G017000 Populus trichocarpa HOM05D005736 ORTHO05D007215 4.1e-139 498.4 301 77.4
Prupe.6G320500 Prunus persica HOM05D005736 ORTHO05D007215 1.2e-138 496.9 302 77.8
Thecc.05G313100 Theobroma cacao HOM05D005736 ORTHO05D007215 1.2e-138 496.9 301 77.7
Psat3g011440 Pisum sativum HOM05D005736 ORTHO05D007215 1.6e-138 496.5 264 92.0
Atru.chr2.31 Acer truncatum HOM05D005736 ORTHO05D007215 2.0e-138 496.1 300 78.3
Sabra13G0020000 Salix brachista HOM05D005736 ORTHO05D007215 2.0e-138 496.1 301 77.1
TWI36G0679 Tripterygium wilfordii HOM05D005736 ORTHO05D007215 2.7e-138 495.7 300 77.3
RcHm_v2.0_Chr3g0455751 Rosa chinensis HOM05D005736 ORTHO05D007215 7.8e-138 494.2 302 77.8
Sabra13G0015800 Salix brachista HOM05D005736 ORTHO05D007215 7.8e-138 494.2 301 76.7
Aqoxy5G00736 Aquilegia oxysepala HOM05D005736 ORTHO05D007215 1.3e-137 493.4 312 72.8
Potri.005G025300 Populus trichocarpa HOM05D005736 ORTHO05D007215 1.3e-137 493.4 301 76.1
Hma1.2p1_1292F.1_g273760 Hydrangea macrophylla HOM05D005736 ORTHO05D007215 1.7e-137 493.0 303 75.6
Peaxi162Scf00037g01216 Petunia axillaris HOM05D005736 ORTHO05D007215 1.7e-137 493.0 302 76.5
Gorai.007G300100 Gossypium raimondii HOM05D005736 ORTHO05D007215 6.6e-137 491.1 301 76.4
PSO210G0197 Papaver somniferum HOM05D005736 ORTHO05D007215 6.6e-137 491.1 303 74.9
CSS0016231 Camellia sinensis var. sinensis HOM05D005736 ORTHO05D007215 8.6e-137 490.7 307 75.9
Gohir.D11G277900 Gossypium hirsutum HOM05D005736 ORTHO05D007215 1.5e-136 490.0 301 76.4
PSO832G2303 Papaver somniferum HOM05D005736 ORTHO05D007215 2.5e-136 489.2 303 74.6
Gohir.A11G268000 Gossypium hirsutum HOM05D005736 ORTHO05D007215 3.3e-136 488.8 301 76.4
CSS0007199 Camellia sinensis var. sinensis HOM05D005736 ORTHO05D007215 5.6e-136 488.0 307 75.6
ClCG02G015270 Citrullus lanatus HOM05D005736 ORTHO05D007215 7.3e-136 487.6 301 75.7
Nitab4.5_0003844g0030 Nicotiana tabacum HOM05D005736 ORTHO05D007215 9.5e-136 487.3 310 74.2
FvH4_6g06571 Fragaria vesca HOM05D005736 ORTHO05D007215 1.2e-135 486.9 302 76.2
MD04G1200300 Malus domestica HOM05D005736 ORTHO05D007215 2.1e-135 486.1 304 77.0
CsaV3_2G006740 Cucumis sativus L. HOM05D005736 ORTHO05D007215 6.2e-135 484.6 301 75.4
DCAR_003356 Daucus carota HOM05D005736 ORTHO05D007215 2.3e-134 482.6 302 73.8
Ciclev10001982m.g Citrus clementina HOM05D005736 ORTHO05D007215 5.2e-134 481.5 300 76.0
SGA_v2.0_scaffold196G40952 Striga asiatica HOM05D005736 ORTHO05D007215 8.9e-134 480.7 300 73.3
CAN.G1459.12 Capsicum annuum HOM05D005736 ORTHO05D007215 1.5e-133 479.9 302 74.2
Lsat_1_v5_gn_7_69261 Lactuca sativa HOM05D005736 ORTHO05D007215 2.0e-133 479.6 307 72.3
Manes.09G170200 Manihot esculenta HOM05D005736 ORTHO05D007215 2.0e-133 479.6 306 75.2
TAR362G0909 Trochodendron aralioides HOM05D005736 ORTHO05D007215 2.0e-133 479.6 305 74.1
Cc02_g34150 Coffea canephora HOM05D005736 ORTHO05D007215 3.4e-133 478.8 310 71.9
PGSC0003DMG400024712 Solanum tuberosum HOM05D005736 ORTHO05D007215 1.7e-132 476.5 301 73.1
Cfa006630 Carpinus fangiana HOM05D005736 ORTHO05D007215 3.7e-132 475.3 300 75.3
Sc09g0002940 Simmondsia chinensis HOM05D005736 ORTHO05D007215 3.7e-132 475.3 303 74.3
HanXRQChr16g0513361 Helianthus annuus HOM05D005736 ORTHO05D007215 6.4e-132 474.6 304 73.4
Sed0015517 Sechium edule HOM05D005736 ORTHO05D007215 8.3e-132 474.2 301 73.8
Hund07098 Selenicereus undatus HOM05D005736 ORTHO05D007215 1.4e-131 473.4 307 73.3
Oeu043344.1 Olea europaea HOM05D005736 ORTHO05D007215 2.4e-131 472.6 300 72.7
HanXRQChr10g0296691 Helianthus annuus HOM05D005736 ORTHO05D007215 4.1e-131 471.9 305 73.4
Sopen01g043240 Solanum pennellii HOM05D005736 ORTHO05D007215 4.1e-131 471.9 301 72.8
Solyc09g065950.3 Solanum lycopersicum HOM05D005736 ORTHO05D007215 1.6e-130 469.9 301 72.1
HPP92_002147 Vanilla planifolia HOM05D005736 ORTHO05D007215 6.0e-130 468.0 304 70.1
FAN05G2751 Fragaria x ananassa HOM05D001134 ORTHO05D007215 1.0e-129 467.2 302 74.5
THA.LOC104818718 Tarenaya hassleriana HOM05D005736 ORTHO05D007215 1.3e-129 466.8 315 68.6
Nn3g21454 Nelumbo nucifera HOM05D005736 ORTHO05D007215 3.0e-129 465.7 302 72.2
AUR62005207 Chenopodium quinoa HOM05D005736 ORTHO05D007215 5.0e-129 464.9 305 71.8
FAN09G2204 Fragaria x ananassa HOM05D001134 ORTHO05D007215 5.0e-129 464.9 302 74.5
ATR0796G081 Amborella trichopoda HOM05D005736 ORTHO05D007215 6.6e-129 464.5 306 70.3
Aa31LG5G15870 Aethionema arabicum HOM05D005736 ORTHO05D007215 8.6e-129 464.2 308 70.1
Ah.06g189800 Amaranthus hybridus HOM05D005736 ORTHO05D007215 8.6e-129 464.2 306 72.2
EL10Ac4g09914 Beta vulgaris HOM05D005736 ORTHO05D007215 8.6e-129 464.2 309 72.2
MSTRG.20415 Avicennia marina HOM05D005736 ORTHO05D007215 3.3e-128 462.2 301 71.8
AL3G16120 Arabidopsis lyrata HOM05D005736 ORTHO05D007215 9.5e-128 460.7 308 69.5
Gohir.A11G294600 Gossypium hirsutum HOM05D005736 ORTHO05D007215 9.5e-128 460.7 302 70.9
ECA234G1428 Erigeron canadensis HOM05D005736 ORTHO05D007215 1.2e-127 460.3 297 69.7
Migut.N02084 Erythranthe guttata HOM05D005736 ORTHO05D007215 1.2e-127 460.3 301 70.8
Migut.O00559 Erythranthe guttata HOM05D005736 ORTHO05D007215 1.6e-127 459.9 301 70.8
FAN02G0934 Fragaria x ananassa HOM05D005736 ORTHO05D007215 1.8e-126 456.4 339 67.0
Sp3g04350 Schrenkiella parvula HOM05D005736 ORTHO05D007215 2.3e-126 456.1 308 68.8
vmacro04813 Vaccinium macrocarpon HOM05D005736 ORTHO05D007215 2.3e-126 456.1 373 61.9
Rhsim07G0188500 Rhododendron simsii HOM05D002832 ORTHO05D008667 8.9e-126 454.1 382 59.9
FAN14G1274 Fragaria x ananassa HOM05D001134 ORTHO05D001035 2.0e-125 453.0 312 71.2
AT3G05520 Arabidopsis thaliana HOM05D005736 ORTHO05D007215 7.5e-125 451.1 308 68.2
BNapus_Darmor_BZH_scaffold_114p00020 Brassica napus HOM05D005736 ORTHO05D007215 7.5e-125 451.1 307 68.4
BraA03t12591Z Brassica rapa HOM05D005736 ORTHO05D007215 7.5e-125 451.1 308 68.2
Carub.0003s0481 Capsella rubella HOM05D005736 ORTHO05D007215 9.9e-125 450.7 309 68.0
BraSC132t45500Z Brassica rapa HOM05D005736 ORTHO05D007215 1.7e-124 449.9 307 68.4
Dinv30811 Davidia involucrata HOM05D005736 ORTHO05D007215 1.7e-124 449.9 303 70.6
BcaB04g19260 Brassica carinata HOM05D005736 ORTHO05D007215 4.9e-124 448.4 303 69.0
BolC3t16437H Brassica oleracea HOM05D005736 ORTHO05D007215 1.1e-123 447.2 303 68.0
CARHR079910 Cardamine hirsuta HOM05D005736 ORTHO05D007215 1.1e-123 447.2 308 68.2
Thhalv10021069m.g Eutrema salsugineum HOM05D005736 ORTHO05D007215 1.9e-123 446.4 313 67.1
CDE02G3291 Ceratophyllum demersum HOM05D005736 ORTHO05D007215 4.1e-123 445.3 305 70.2
Gorai.007G341300 Gossypium raimondii HOM05D005736 ORTHO05D007215 1.2e-122 443.7 326 65.6
BcaB04g19261 Brassica carinata HOM05D005736 ORTHO05D007215 2.1e-122 443.0 308 67.2
A03p34170 Brassica napus HOM05D005736 ORTHO05D007215 2.1e-122 443.0 307 67.4
C03p41560 Brassica napus HOM05D005736 ORTHO05D007215 2.7e-122 442.6 317 66.2
Zm00001eb330450 Zea mays HOM05D005736 ORTHO05D007215 8.1e-119 431.0 306 64.4
MELO3C004216.2 Cucumis melo HOM05D005736 ORTHO05D007215 6.8e-118 427.9 301 68.8
BolC1t05691H Brassica oleracea HOM05D005736 ORTHO05D007215 8.9e-118 427.6 331 63.1
Eucgr.H04534 Eucalyptus grandis HOM05D005736 ORTHO05D007215 3.5e-114 415.6 271 73.8
Cpa.g.sc48.100 Carica papaya HOM05D005736 ORTHO05D007215 4.6e-114 415.2 306 67.0
Zm00001eb111300 Zea mays HOM05D005736 ORTHO05D007215 1.1e-112 410.6 306 62.7
AUR62000762 Chenopodium quinoa HOM05D005736 ORTHO05D007215 2.1e-103 379.8 266 67.3
unitig_46.g18374 Utricularia gibba HOM05D005736 ORTHO05D007215 2.6e-101 372.9 260 65.8
Gohir.D11G309300 Gossypium hirsutum HOM05D005736 ORTHO05D007215 1.0e-97 360.9 232 71.1
Mapoly0002s0253 Marchantia polymorpha HOM05D005736 ORTHO05D007215 1.8e-94 350.1 301 53.2
unitig_46.g18363 Utricularia gibba HOM05D005736 ORTHO05D007215 1.5e-93 347.1 301 56.1
AagrBONN_evm.TU.Sc2ySwM_344.5036 Anthoceros agrestis HOM05D005736 ORTHO05D007215 9.9e-93 344.4 299 55.9
Os07g0414800 Oryza sativa ssp. japonica HOM05D005736 ORTHO05D007215 3.9e-89 332.4 215 69.8
RcHm_v2.0_Chr1g0327431 Rosa chinensis HOM05D005736 ORTHO05D007215 3.9e-89 332.4 200 78.0
Actinidia35560 Actinidia chinensis HOM05D002832 ORTHO05D008667 2.1e-87 326.6 268 62.3
SMO196G0013 Selaginella moellendorffii HOM05D005736 ORTHO05D007215 4.0e-86 322.4 291 54.6
unitig_48.g30289 Utricularia gibba HOM05D005736 ORTHO05D007215 1.7e-84 317.0 301 54.2
Nitab4.5_0018629g0010 Nicotiana tabacum HOM05D005736 ORTHO05D007215 4.6e-82 308.9 176 79.5
Sopen09g027740 Solanum pennellii HOM05D005736 ORTHO05D007215 7.4e-80 301.6 176 77.3
BcaC09g47830 Brassica carinata HOM05D005736 ORTHO05D007215 1.5e-77 293.9 210 66.2
Lj5A420T26 Lonicera japonica HOM05D005736 ORTHO05D007215 8.5e-68 261.5 177 70.6
Pp3c10_25170 Physcomitrium patens HOM05D005736 ORTHO05D007215 8.5e-68 261.5 236 52.5
RcHm_v2.0_Chr1g0322221 Rosa chinensis HOM05D005736 ORTHO05D007215 2.7e-66 256.5 180 70.6
RcHm_v2.0_Chr3g0465741 Rosa chinensis HOM05D005736 ORTHO05D007215 1.1e-59 234.6 142 76.1
Pp3c20_23130 Physcomitrium patens HOM05D005736 ORTHO05D007215 9.7e-56 221.5 185 57.8
MBI18_g08112_MAGBIO Magnolia biondii HOM05D005736 ORTHO05D007215 4.4e-48 196.1 130 70.8
BcaB05g23235 Brassica carinata HOM05D005736 ORTHO05D007215 6.3e-47 192.2 170 54.7
Actinidia16813 Actinidia chinensis HOM05D005736 ORTHO05D007215 2.4e-46 190.3 129 72.9
RcHm_v2.0_Chr1g0322051 Rosa chinensis HOM05D005736 ORTHO05D007215 2.4e-46 190.3 124 74.2
Actinidia16814 Actinidia chinensis HOM05D005736 ORTHO05D007215 5.9e-45 185.7 106 80.2
BcaB04g21446 Brassica carinata HOM05D005736 ORTHO05D007215 1.5e-43 181.0 130 67.7
MBI18_g44147_MAGBIO Magnolia biondii HOM05D005736 ORTHO05D007215 8.8e-41 171.8 116 69.8
RcHm_v2.0_Chr1g0322151 Rosa chinensis HOM05D005736 ORTHO05D007215 3.8e-36 156.4 103 72.8
Nitab4.5_0003658g0100 Nicotiana tabacum HOM05D001134 ORTHO05D001035 1.5e-35 154.5 110 70.0
TAR636G3309 Trochodendron aralioides HOM05D005736 ORTHO05D007215 1.4e-33 147.9 103 67.0
TAR629G2822 Trochodendron aralioides HOM05D005736 ORTHO05D007215 2.0e-32 144.1 103 67.0
unitig_48.g30291 Utricularia gibba HOM05D003281 ORTHO05D004128 1.2e-18 98.2 76 59.2
MBI18_g08111_MAGBIO Magnolia biondii HOM05D005736 ORTHO05D007215 3.7e-15 86.7 52 73.1


User provided reference genes

Program Settings