Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G33171 Trifolium pratense HOM05D004381 ORTHO05D005200 7.0e-85 317.4 176 100.0
Psat7g213080 Pisum sativum HOM05D004381 ORTHO05D005200 6.4e-14 81.6 43 90.7
Glyma.11G132500 Glycine max HOM05D004381 ORTHO05D005200 1.9e-13 80.1 43 88.4
Medtr4g065640 Medicago truncatula HOM05D004381 ORTHO05D005200 1.9e-13 80.1 53 73.6
Phvul.011G058500 Phaseolus vulgaris HOM05D004381 ORTHO05D005200 1.9e-13 80.1 43 88.4
Ca_20572_v3 Cicer arietinum L. HOM05D004381 ORTHO05D005200 2.4e-13 79.7 43 88.4
Ca_30507_v3 Cicer arietinum L. HOM05D004381 ORTHO05D005200 2.4e-13 79.7 43 88.4
TPR.G35036 Trifolium pratense HOM05D004381 ORTHO05D005200 2.4e-13 79.7 43 88.4
Lalb_Chr19g0138141 Lupinus albus HOM05D004381 ORTHO05D005200 4.2e-13 79.0 52 75.0
VMungo1127G1882 Vigna mungo HOM05D004381 ORTHO05D005200 9.3e-13 77.8 42 85.7
Rhsim13G0223600 Rhododendron simsii HOM05D004381 ORTHO05D005200 1.2e-12 77.4 43 81.4
arahy.Tifrunner.gnm1.ann1.BUZ3KN Arachis hypogaea HOM05D004381 ORTHO05D005200 2.1e-12 76.6 43 83.7
arahy.Tifrunner.gnm1.ann1.N626J4 Arachis hypogaea HOM05D004381 ORTHO05D005200 2.1e-12 76.6 43 83.7
Lj3g0009499 Lotus japonicus HOM05D004381 ORTHO05D005200 3.5e-12 75.9 43 83.7
CANSAT35G1357 Cannabis sativa HOM05D004381 ORTHO05D005200 4.6e-12 75.5 43 83.7
Aqoxy7G00799 Aquilegia oxysepala HOM05D004381 ORTHO05D005200 6.0e-12 75.1 43 83.7
Glyma.13G340900 Glycine max HOM05D004381 ORTHO05D005200 6.0e-12 75.1 43 83.7
Glyma.15G033500 Glycine max HOM05D004381 ORTHO05D005200 6.0e-12 75.1 43 83.7
Lj3g0004330 Lotus japonicus HOM05D004381 ORTHO05D005200 6.0e-12 75.1 43 83.7
Phvul.L011443 Phaseolus vulgaris HOM05D004381 ORTHO05D005200 6.0e-12 75.1 43 83.7
Potri.001G018800 Populus trichocarpa HOM05D004381 ORTHO05D005200 6.0e-12 75.1 43 83.7
Sabra01G0013400 Salix brachista HOM05D004381 ORTHO05D005200 6.0e-12 75.1 43 83.7
VMungo1080G0554 Vigna mungo HOM05D004381 ORTHO05D005200 6.0e-12 75.1 43 83.7
arahy.Tifrunner.gnm1.ann1.E88S00 Arachis hypogaea HOM05D004381 ORTHO05D005200 7.9e-12 74.7 43 83.7
arahy.Tifrunner.gnm1.ann1.T21L4I Arachis hypogaea HOM05D004381 ORTHO05D005200 7.9e-12 74.7 43 83.7
Ca_01288_v3 Cicer arietinum L. HOM05D004381 ORTHO05D005200 7.9e-12 74.7 43 83.7
Duzib150G0594 Durio zibethinus HOM05D004381 ORTHO05D005200 7.9e-12 74.7 43 83.7
Lalb_Chr22g0352331 Lupinus albus HOM05D004381 ORTHO05D005200 7.9e-12 74.7 43 83.7
Medtr2g098150 Medicago truncatula HOM05D004381 ORTHO05D005200 7.9e-12 74.7 43 83.7
Psat5g287120 Pisum sativum HOM05D004381 ORTHO05D005200 7.9e-12 74.7 43 83.7
TPR.G6819 Trifolium pratense HOM05D004381 ORTHO05D005200 7.9e-12 74.7 43 83.7
EL10Ac4g10297 Beta vulgaris HOM05D004381 ORTHO05D005200 1.0e-11 74.3 44 79.5
MBI04_g13625_MAGBIO Magnolia biondii HOM05D004381 ORTHO05D005200 1.3e-11 73.9 43 81.4
MD11G1029400 Malus domestica HOM05D004381 ORTHO05D005200 1.3e-11 73.9 43 81.4
Manes.06G166500 Manihot esculenta HOM05D004381 ORTHO05D005200 1.3e-11 73.9 43 81.4
Os02g0196000 Oryza sativa ssp. japonica HOM05D004381 ORTHO05D005200 1.3e-11 73.9 43 81.4
SGA_v2.0_scaffold247G44855 Striga asiatica HOM05D004381 ORTHO05D005200 1.3e-11 73.9 43 81.4
Thecc.09G228300 Theobroma cacao HOM05D004381 ORTHO05D005200 1.3e-11 73.9 43 81.4
Atru.chr3.2598 Acer truncatum HOM05D004381 ORTHO05D005200 1.8e-11 73.6 43 81.4
MSTRG.21391 Avicennia marina HOM05D004381 ORTHO05D005200 1.8e-11 73.6 43 81.4
Cpa.g.sc84.75 Carica papaya HOM05D004381 ORTHO05D005200 1.8e-11 73.6 43 81.4
CiPaw.13G163200 Carya illinoinensis HOM05D004381 ORTHO05D005200 1.8e-11 73.6 43 81.4
CDE10G0019 Ceratophyllum demersum HOM05D004381 ORTHO05D005200 1.8e-11 73.6 43 81.4
Ciclev10016213m.g Citrus clementina HOM05D004381 ORTHO05D005200 1.8e-11 73.6 43 81.4
Cc06_g22560 Coffea canephora HOM05D004381 ORTHO05D005200 1.8e-11 73.6 43 81.4
COL.COLO4_24848 Corchorus olitorius HOM05D004381 ORTHO05D005200 1.8e-11 73.6 43 81.4
Haze_23102 Corylus avellana HOM05D004381 ORTHO05D005200 1.8e-11 73.6 43 81.4
Dinv36273 Davidia involucrata HOM05D004381 ORTHO05D005200 1.8e-11 73.6 43 81.4
Eucgr.J00789 Eucalyptus grandis HOM05D004381 ORTHO05D005200 1.8e-11 73.6 43 81.4
Gohir.A08G013200 Gossypium hirsutum HOM05D004381 ORTHO05D005200 1.8e-11 73.6 43 81.4
Gohir.D08G023600 Gossypium hirsutum HOM05D004381 ORTHO05D005200 1.8e-11 73.6 43 81.4
Gorai.004G018900 Gossypium raimondii HOM05D004381 ORTHO05D005200 1.8e-11 73.6 43 81.4
HanXRQChr02g0056281 Helianthus annuus HOM05D004381 ORTHO05D005200 1.8e-11 73.6 43 81.4
MBI01_g27615_MAGBIO Magnolia biondii HOM05D004381 ORTHO05D005200 1.8e-11 73.6 40 90.0
MD03G1024300 Malus domestica HOM05D004381 ORTHO05D005200 1.8e-11 73.6 43 79.1
Potri.003G205100 Populus trichocarpa HOM05D004381 ORTHO05D005200 1.8e-11 73.6 43 81.4
Prupe.6G023700 Prunus persica HOM05D004381 ORTHO05D005200 1.8e-11 73.6 43 81.4
Hund22064 Selenicereus undatus HOM05D004381 ORTHO05D005200 1.8e-11 73.6 43 81.4
TAR623G1292 Trochodendron aralioides HOM05D004381 ORTHO05D005200 1.8e-11 73.6 43 81.4
HPP92_020510 Vanilla planifolia HOM05D004381 ORTHO05D005200 1.8e-11 73.6 43 81.4
Ah.06g193660 Amaranthus hybridus HOM05D004381 ORTHO05D005200 2.3e-11 73.2 43 81.4
CSS0020783 Camellia sinensis var. sinensis HOM05D004381 ORTHO05D005200 2.3e-11 73.2 43 79.1
Cfa009743 Carpinus fangiana HOM05D004381 ORTHO05D005200 2.3e-11 73.2 43 81.4
DCAR_031567 Daucus carota HOM05D004381 ORTHO05D005200 2.3e-11 73.2 43 81.4
ECA233G0542 Erigeron canadensis HOM05D004381 ORTHO05D005200 2.3e-11 73.2 43 81.4
Migut.D00582 Erythranthe guttata HOM05D004381 ORTHO05D005200 2.3e-11 73.2 43 81.4
Migut.O00580 Erythranthe guttata HOM05D004381 ORTHO05D005200 2.3e-11 73.2 43 81.4
FvH4_3g43050 Fragaria vesca HOM05D004381 ORTHO05D005200 2.3e-11 73.2 43 79.1
FAN11G3745 Fragaria x ananassa HOM05D004381 ORTHO05D005200 2.3e-11 73.2 43 79.1
FAN16G2672 Fragaria x ananassa HOM05D004381 ORTHO05D005200 2.3e-11 73.2 43 79.1
FAN21G3999 Fragaria x ananassa HOM05D004381 ORTHO05D005200 2.3e-11 73.2 43 79.1
FAN25G0848 Fragaria x ananassa HOM05D004381 ORTHO05D005200 2.3e-11 73.2 43 79.1
Lsat_1_v5_gn_6_48200 Lactuca sativa HOM05D004381 ORTHO05D005200 2.3e-11 73.2 43 81.4
QL01p005255 Quercus lobata HOM05D004381 ORTHO05D005200 2.3e-11 73.2 43 81.4
RcHm_v2.0_Chr5g0077111 Rosa chinensis HOM05D004381 ORTHO05D005200 2.3e-11 73.2 43 79.1
arahy.Tifrunner.gnm1.ann1.LPI13M Arachis hypogaea HOM05D004381 ORTHO05D005200 3.9e-11 72.4 43 81.4
Lj1A348T17 Lonicera japonica HOM05D004381 ORTHO05D005200 3.9e-11 72.4 42 81.0
Nn7g36163 Nelumbo nucifera HOM05D004381 ORTHO05D005200 3.9e-11 72.4 43 81.4
arahy.Tifrunner.gnm1.ann1.H592TP Arachis hypogaea HOM05D004381 ORTHO05D005200 5.1e-11 72.0 43 79.1
AUR62000098 Chenopodium quinoa HOM05D004381 ORTHO05D005200 5.1e-11 72.0 42 81.0
AUR62019272 Chenopodium quinoa HOM05D004381 ORTHO05D005200 5.1e-11 72.0 42 81.0
Hma1.2p1_0118F.1_g056480 Hydrangea macrophylla HOM05D004381 ORTHO05D005200 5.1e-11 72.0 42 81.0
Oeu035739.1 Olea europaea HOM05D004381 ORTHO05D005200 5.1e-11 72.0 42 81.0
Oeu052046.2 Olea europaea HOM05D004381 ORTHO05D005200 5.1e-11 72.0 42 81.0
CAN.G71.8 Capsicum annuum HOM05D004381 ORTHO05D005200 6.7e-11 71.6 43 79.1
Peaxi162Scf00029g02914 Petunia axillaris HOM05D004381 ORTHO05D005200 6.7e-11 71.6 43 79.1
Sabra03G0151600 Salix brachista HOM05D004381 ORTHO05D005200 6.7e-11 71.6 43 79.1
Solyc11g062020.2 Solanum lycopersicum HOM05D004381 ORTHO05D005200 6.7e-11 71.6 43 79.1
Sopen11g023990 Solanum pennellii HOM05D004381 ORTHO05D005200 6.7e-11 71.6 43 79.1
TWI60G0262 Tripterygium wilfordii HOM05D004381 ORTHO05D005200 6.7e-11 71.6 43 79.1
unitig_26.g10132 Utricularia gibba HOM05D004381 ORTHO05D005200 6.7e-11 71.6 57 64.9
MSTRG.18417 Avicennia marina HOM05D004381 ORTHO05D005200 8.7e-11 71.2 43 79.1
vmacro04193 Vaccinium macrocarpon HOM05D004381 ORTHO05D005200 8.7e-11 71.2 42 78.6
GSVIVG01025302001 Vitis vinifera HOM05D004381 ORTHO05D005200 8.7e-11 71.2 43 79.1
ATR0605G196 Amborella trichopoda HOM05D004381 ORTHO05D005200 1.1e-10 70.9 43 79.1
Gohir.D11G292000 Gossypium hirsutum HOM05D004381 ORTHO05D005200 1.1e-10 70.9 43 76.7
Gorai.007G316100 Gossypium raimondii HOM05D004381 ORTHO05D005200 1.1e-10 70.9 43 76.7
Nn2g15439 Nelumbo nucifera HOM05D004381 ORTHO05D005200 1.1e-10 70.9 43 76.7
Os08g0100200 Oryza sativa ssp. japonica HOM05D004381 ORTHO05D005200 1.1e-10 70.9 47 74.5
PSO210G6888 Papaver somniferum HOM05D004381 ORTHO05D005200 1.1e-10 70.9 40 85.0
THA.LOC104817902 Tarenaya hassleriana HOM05D004381 ORTHO05D005200 1.1e-10 70.9 43 79.1
Aa31LG8G7690 Aethionema arabicum HOM05D004381 ORTHO05D005200 1.9e-10 70.1 43 76.7
BcaC05g28200 Brassica carinata HOM05D004381 ORTHO05D005200 1.9e-10 70.1 43 76.7
A05p27840 Brassica napus HOM05D004381 ORTHO05D005200 1.9e-10 70.1 43 76.7
C05p43180 Brassica napus HOM05D004381 ORTHO05D005200 1.9e-10 70.1 43 76.7
BolC5t33048H Brassica oleracea HOM05D004381 ORTHO05D005200 1.9e-10 70.1 43 76.7
BraA05t21671Z Brassica rapa HOM05D004381 ORTHO05D005200 1.9e-10 70.1 43 76.7
CARHR096750 Cardamine hirsuta HOM05D004381 ORTHO05D005200 1.9e-10 70.1 43 76.7
Duzib168G0673 Durio zibethinus HOM05D004381 ORTHO05D005200 1.9e-10 70.1 43 76.7
Thhalv10021300m.g Eutrema salsugineum HOM05D004381 ORTHO05D005200 1.9e-10 70.1 43 76.7
Nitab4.5_0000492g0060 Nicotiana tabacum HOM05D004381 ORTHO05D005200 1.9e-10 70.1 42 78.6
Nitab4.5_0002026g0030 Nicotiana tabacum HOM05D004381 ORTHO05D005200 1.9e-10 70.1 42 78.6
Sp3g18900 Schrenkiella parvula HOM05D004381 ORTHO05D005200 1.9e-10 70.1 43 76.7
AL3G34820 Arabidopsis lyrata HOM05D004381 ORTHO05D005200 2.5e-10 69.7 43 76.7
AT3G20870 Arabidopsis thaliana HOM05D004381 ORTHO05D005200 2.5e-10 69.7 43 76.7
Carub.0003s2085 Capsella rubella HOM05D004381 ORTHO05D005200 2.5e-10 69.7 43 76.7
SEGI_07837 Sequoiadendron giganteum HOM05D004381 ORTHO05D005200 2.5e-10 69.7 43 76.7
CiPaw.14G121000 Carya illinoinensis HOM05D004381 ORTHO05D005200 3.3e-10 69.3 43 79.1
MELO3C014607.2 Cucumis melo HOM05D004381 ORTHO05D005200 3.3e-10 69.3 43 76.7
CsaV3_4G024140 Cucumis sativus L. HOM05D004381 ORTHO05D005200 3.3e-10 69.3 43 76.7
PSO210G5188 Papaver somniferum HOM05D004381 ORTHO05D005200 3.3e-10 69.3 40 85.0
Zm00001eb205960 Zea mays HOM05D004381 ORTHO05D005200 3.3e-10 69.3 43 76.7
TWI34G1572 Tripterygium wilfordii HOM05D004381 ORTHO05D005200 5.6e-10 68.6 43 76.7
Glyma.08G063100 Glycine max HOM05D004381 ORTHO05D005200 7.4e-10 68.2 47 63.8
HanXRQChr17g0534131 Helianthus annuus HOM05D004381 ORTHO05D005200 7.4e-10 68.2 43 79.1
MBI09_g41969_MAGBIO Magnolia biondii HOM05D004381 ORTHO05D005200 7.4e-10 68.2 40 82.5
Actinidia16315 Actinidia chinensis HOM05D004381 ORTHO05D005200 9.6e-10 67.8 85 43.5
Sed0000340 Sechium edule HOM05D004381 ORTHO05D005200 1.3e-09 67.4 43 74.4
SMO347G0569 Selaginella moellendorffii HOM05D004381 ORTHO05D005200 2.1e-09 66.6 53 62.3
Zm00001eb213530 Zea mays HOM05D004381 ORTHO05D005200 2.1e-09 66.6 40 80.0
AagrBONN_evm.TU.Sc2ySwM_362.691 Anthoceros agrestis HOM05D004381 ORTHO05D005200 5.3e-08 62.0 88 43.2
Pp3c16_16530 Physcomitrium patens HOM05D004381 ORTHO05D005200 6.9e-08 61.6 43 62.8
MSTRG.21390 Avicennia marina HOM05D004381 ORTHO05D005200 9.0e-08 61.2 43 65.1
ClCG02G023360 Citrullus lanatus HOM05D004381 ORTHO05D005200 3.4e-07 59.3 46 60.9
Mapoly0039s0091 Marchantia polymorpha HOM05D004381 ORTHO05D005200 4.5e-07 58.9 43 65.1


User provided reference genes

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