Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G3315 Trifolium pratense HOM05D002388 ORTHO05D004745 7.7e-109 397.1 197 100.0
Psat4g121840 Pisum sativum HOM05D002388 ORTHO05D004745 6.0e-93 344.4 197 87.3
Ca_22658_v3 Cicer arietinum L. HOM05D002388 ORTHO05D004745 6.8e-89 330.9 197 83.8
Medtr8g066470 Medicago truncatula HOM05D002388 ORTHO05D004745 3.6e-82 308.5 212 77.4
TPR.G8093 Trifolium pratense HOM05D002388 ORTHO05D004745 1.9e-62 243.0 199 65.3
Ca_25190_v3 Cicer arietinum L. HOM05D002388 ORTHO05D004745 9.3e-62 240.7 199 64.3
arahy.Tifrunner.gnm1.ann1.DQ9IRR Arachis hypogaea HOM05D002388 ORTHO05D004745 5.1e-60 235.0 200 63.5
arahy.Tifrunner.gnm1.ann1.JAYF1A Arachis hypogaea HOM05D002388 ORTHO05D004745 5.1e-60 235.0 200 63.5
Dinv28990 Davidia involucrata HOM05D002388 ORTHO05D004745 8.7e-60 234.2 205 61.5
Psat2g138920 Pisum sativum HOM05D002388 ORTHO05D004745 2.5e-59 232.6 199 62.8
Medtr5g029600 Medicago truncatula HOM05D002388 ORTHO05D004745 5.6e-59 231.5 196 62.2
Lj2g0009669 Lotus japonicus HOM05D002388 ORTHO05D004745 7.3e-59 231.1 193 63.7
Atru.chr6.1616 Acer truncatum HOM05D002388 ORTHO05D004745 9.6e-59 230.7 200 63.0
Lalb_Chr16g0381151 Lupinus albus HOM05D002388 ORTHO05D004745 6.2e-58 228.0 199 60.8
CiPaw.11G097400 Carya illinoinensis HOM05D002388 ORTHO05D004745 2.4e-57 226.1 201 63.2
Dinv25247 Davidia involucrata HOM05D002388 ORTHO05D004745 2.6e-56 222.6 205 59.5
Hma1.2p1_0572F.1_g181220 Hydrangea macrophylla HOM05D002388 ORTHO05D004745 2.6e-56 222.6 203 58.6
Lalb_Chr09g0325541 Lupinus albus HOM05D002388 ORTHO05D004745 2.9e-55 219.2 213 54.5
CSS0030959 Camellia sinensis var. sinensis HOM05D002388 ORTHO05D004745 4.9e-55 218.4 204 57.4
GSVIVG01013067001 Vitis vinifera HOM05D002388 ORTHO05D004745 4.9e-55 218.4 206 59.2
QL12p001291 Quercus lobata HOM05D002388 ORTHO05D004745 1.1e-54 217.2 200 59.5
Cpa.g.sc90.11 Carica papaya HOM05D002388 ORTHO05D004745 1.4e-54 216.9 200 60.0
TWI15G0743 Tripterygium wilfordii HOM05D002388 ORTHO05D004745 1.4e-54 216.9 198 58.1
Glyma.09G207100 Glycine max HOM05D002388 ORTHO05D004745 1.9e-54 216.5 198 60.1
Ciclev10002550m.g Citrus clementina HOM05D002388 ORTHO05D004745 2.4e-54 216.1 198 58.6
MD06G1025400 Malus domestica HOM05D002388 ORTHO05D004745 3.2e-54 215.7 200 57.5
Potri.003G095600 Populus trichocarpa HOM05D002388 ORTHO05D004745 5.4e-54 214.9 205 60.5
Prupe.5G029700 Prunus persica HOM05D002388 ORTHO05D004745 2.1e-53 213.0 198 58.6
FAN18G3398 Fragaria x ananassa HOM05D002388 ORTHO05D004745 2.7e-53 212.6 201 57.7
FAN18G3813 Fragaria x ananassa HOM05D002388 ORTHO05D004745 2.7e-53 212.6 201 57.7
VMungo1215G2489 Vigna mungo HOM05D002388 ORTHO05D004745 2.7e-53 212.6 197 58.4
RcHm_v2.0_Chr7g0211591 Rosa chinensis HOM05D002388 ORTHO05D004745 3.5e-53 212.2 202 56.4
TWI60G0128 Tripterygium wilfordii HOM05D002388 ORTHO05D004745 3.5e-53 212.2 202 56.4
VMungo0251G2329 Vigna mungo HOM05D002388 ORTHO05D004745 6.0e-53 211.5 199 57.8
Glyma.01G015300 Glycine max HOM05D002388 ORTHO05D004745 7.9e-53 211.1 198 59.6
Duzib205G0909 Durio zibethinus HOM05D002388 ORTHO05D004745 1.0e-52 210.7 202 56.9
PGR042G0491 Punica granatum HOM05D002388 ORTHO05D004745 1.0e-52 210.7 200 57.5
Cfa012514 Carpinus fangiana HOM05D002388 ORTHO05D004745 1.3e-52 210.3 207 59.4
FAN08G3109 Fragaria x ananassa HOM05D002388 ORTHO05D004745 2.3e-52 209.5 201 56.7
CANSAT35G0066 Cannabis sativa HOM05D002388 ORTHO05D004745 5.1e-52 208.4 202 58.9
Duzib068G1098 Durio zibethinus HOM05D002388 ORTHO05D004745 6.7e-52 208.0 202 56.4
FAN04G3082 Fragaria x ananassa HOM05D002388 ORTHO05D004745 8.7e-52 207.6 201 55.7
Phvul.003G283700 Phaseolus vulgaris HOM05D002388 ORTHO05D004745 8.7e-52 207.6 199 59.8
Eucgr.E00235 Eucalyptus grandis HOM05D002388 ORTHO05D004745 1.1e-51 207.2 202 56.4
vmacro00293 Vaccinium macrocarpon HOM05D002388 ORTHO05D004745 1.1e-51 207.2 199 56.8
vmacro00300 Vaccinium macrocarpon HOM05D002388 ORTHO05D004745 1.1e-51 207.2 199 56.8
FvH4_5g22890 Fragaria vesca HOM05D002388 ORTHO05D004745 3.3e-51 205.7 208 55.8
Actinidia03351 Actinidia chinensis HOM05D002388 ORTHO05D004745 5.6e-51 204.9 206 55.8
FAN13G2852 Fragaria x ananassa HOM05D002388 ORTHO05D004745 7.4e-51 204.5 201 55.7
Gorai.004G182900 Gossypium raimondii HOM05D002388 ORTHO05D004745 9.6e-51 204.1 200 58.0
SGA_v2.0_scaffold20G09262 Striga asiatica HOM05D002388 ORTHO05D004745 9.6e-51 204.1 200 52.0
Gohir.A08G154400 Gossypium hirsutum HOM05D002388 ORTHO05D004745 1.3e-50 203.8 200 58.0
Gohir.D08G175075 Gossypium hirsutum HOM05D002388 ORTHO05D004745 1.3e-50 203.8 200 58.0
Manes.15G188200 Manihot esculenta HOM05D002388 ORTHO05D004745 1.3e-50 203.8 202 57.4
Phvul.002G137900 Phaseolus vulgaris HOM05D002388 ORTHO05D004745 1.6e-50 203.4 198 55.6
Potri.001G138200 Populus trichocarpa HOM05D002388 ORTHO05D004745 6.2e-50 201.4 203 56.2
Ciclev10002623m.g Citrus clementina HOM05D002388 ORTHO05D004745 1.8e-49 199.9 196 56.6
THA.LOC104798489 Tarenaya hassleriana HOM05D002388 ORTHO05D004745 2.4e-49 199.5 209 53.1
Thecc.03G308500 Theobroma cacao HOM05D002388 ORTHO05D004745 2.4e-49 199.5 207 54.6
Cc08_g03410 Coffea canephora HOM05D002388 ORTHO05D004745 3.1e-49 199.1 202 55.0
CARHR031630 Cardamine hirsuta HOM05D002388 ORTHO05D004745 5.3e-49 198.4 199 56.8
Nn1g00186 Nelumbo nucifera HOM05D002388 ORTHO05D004745 1.2e-48 197.2 207 52.7
Rhsim07G0131100 Rhododendron simsii HOM05D002388 ORTHO05D004745 2.0e-48 196.4 199 58.8
MSTRG.13744 Avicennia marina HOM05D002388 ORTHO05D004745 5.8e-48 194.9 196 53.6
Cfa012499 Carpinus fangiana HOM05D002388 ORTHO05D004745 5.8e-48 194.9 186 57.0
Ah.12g055410 Amaranthus hybridus HOM05D002388 ORTHO05D004745 1.0e-47 194.1 206 51.5
AT1G32260 Arabidopsis thaliana HOM05D002388 ORTHO05D004745 1.3e-47 193.7 211 52.1
Carub.0001s3059 Capsella rubella HOM05D002388 ORTHO05D004745 1.7e-47 193.4 201 54.7
THA.LOC104814421 Tarenaya hassleriana HOM05D002388 ORTHO05D004745 1.7e-47 193.4 203 53.7
A09p33880 Brassica napus HOM05D002388 ORTHO05D004745 2.2e-47 193.0 205 54.1
BraA09t38936Z Brassica rapa HOM05D002388 ORTHO05D004745 2.2e-47 193.0 205 54.1
Haze_08151 Corylus avellana HOM05D002388 ORTHO05D004745 2.9e-47 192.6 216 53.2
CsaV3_3G001460 Cucumis sativus L. HOM05D002388 ORTHO05D004745 4.9e-47 191.8 198 55.6
COL.COLO4_16959 Corchorus olitorius HOM05D002388 ORTHO05D004745 6.5e-47 191.4 208 52.4
Nn3g19408 Nelumbo nucifera HOM05D002388 ORTHO05D004745 6.5e-47 191.4 205 51.7
PSO339G4108 Papaver somniferum HOM05D002388 ORTHO05D004745 8.4e-47 191.0 204 51.5
BcaB07g32907 Brassica carinata HOM05D002388 ORTHO05D004745 1.1e-46 190.7 204 52.9
Thhalv10008414m.g Eutrema salsugineum HOM05D002388 ORTHO05D004745 1.1e-46 190.7 208 51.4
ClCG10G001380 Citrullus lanatus HOM05D002388 ORTHO05D004745 1.9e-46 189.9 198 56.1
Sp1g27940 Schrenkiella parvula HOM05D002388 ORTHO05D004745 3.2e-46 189.1 212 50.5
Haze_08172 Corylus avellana HOM05D002388 ORTHO05D004745 5.5e-46 188.3 190 57.4
C05p31720 Brassica napus HOM05D002388 ORTHO05D004745 7.1e-46 188.0 204 54.9
BolC5t31898H Brassica oleracea HOM05D002388 ORTHO05D004745 7.1e-46 188.0 204 54.9
Hund14363 Selenicereus undatus HOM05D002388 ORTHO05D004745 9.3e-46 187.6 206 51.9
EL10Ac5g12028 Beta vulgaris HOM05D002388 ORTHO05D004745 2.1e-45 186.4 201 50.7
Cfa012512 Carpinus fangiana HOM05D002388 ORTHO05D004745 2.1e-45 186.4 202 55.9
Cfa021255 Carpinus fangiana HOM05D002388 ORTHO05D004745 2.1e-45 186.4 202 55.9
Sabra01G0106900 Salix brachista HOM05D002388 ORTHO05D008833 2.1e-45 186.4 219 51.1
BcaC05g27267 Brassica carinata HOM05D002388 ORTHO05D004745 4.6e-45 185.3 204 54.4
Gohir.D03G175500 Gossypium hirsutum HOM05D002388 ORTHO05D004745 1.0e-44 184.1 204 52.0
Solyc08g076510.3 Solanum lycopersicum HOM05D002388 ORTHO05D004745 1.0e-44 184.1 202 50.5
Sopen08g025090 Solanum pennellii HOM05D002388 ORTHO05D004745 1.0e-44 184.1 202 50.5
MSTRG.1999 Avicennia marina HOM05D002388 ORTHO05D004745 1.3e-44 183.7 204 50.5
Aa31LG2G13740 Aethionema arabicum HOM05D002388 ORTHO05D004745 1.8e-44 183.3 202 52.5
Ciclev10003612m.g Citrus clementina HOM05D002388 ORTHO05D004745 3.0e-44 182.6 198 54.0
Aqoxy3G02211 Aquilegia oxysepala HOM05D004797 ORTHO05D004745 5.1e-44 181.8 196 50.5
Migut.E00774 Erythranthe guttata HOM05D002388 ORTHO05D004745 6.7e-44 181.4 199 50.3
Rhsim11G0019800 Rhododendron simsii HOM05D002388 ORTHO05D004745 6.7e-44 181.4 272 43.0
Gorai.003G184500 Gossypium raimondii HOM05D002388 ORTHO05D004745 8.7e-44 181.0 204 51.5
Peaxi162Scf00170g00816 Petunia axillaris HOM05D002388 ORTHO05D004745 1.5e-43 180.3 203 48.3
Sc22g0001810 Simmondsia chinensis HOM05D002388 ORTHO05D004745 1.5e-43 180.3 205 49.8
PGSC0003DMG400014808 Solanum tuberosum HOM05D002388 ORTHO05D004745 1.5e-43 180.3 203 48.3
Nitab4.5_0000529g0040 Nicotiana tabacum HOM05D002388 ORTHO05D004745 1.9e-43 179.9 203 48.8
Nitab4.5_0001595g0030 Nicotiana tabacum HOM05D002388 ORTHO05D004745 4.3e-43 178.7 203 48.3
Aa31LG9G15470 Aethionema arabicum HOM05D002388 ORTHO05D004745 1.6e-42 176.8 200 48.0
Ciclev10003879m.g Citrus clementina HOM05D002388 ORTHO05D004745 1.6e-42 176.8 198 51.5
Lsat_1_v5_gn_6_3520 Lactuca sativa HOM05D002388 ORTHO05D004745 3.7e-42 175.6 194 49.5
Thhalv10017272m.g Eutrema salsugineum HOM05D002388 ORTHO05D004745 8.2e-42 174.5 202 47.5
HanXRQChr02g0049371 Helianthus annuus HOM05D002388 ORTHO05D004745 8.2e-42 174.5 193 48.7
Oeu028869.2 Olea europaea HOM05D002388 ORTHO05D004745 8.2e-42 174.5 260 41.5
SalBow1G6210 Salvia bowleyana HOM05D002388 ORTHO05D004745 8.2e-42 174.5 194 49.5
Sp4g17700 Schrenkiella parvula HOM05D002388 ORTHO05D004745 1.8e-41 173.3 207 49.3
Sed0016521 Sechium edule HOM05D002388 ORTHO05D004745 4.0e-41 172.2 201 48.3
Haze_08150 Corylus avellana HOM05D002388 ORTHO05D004745 5.3e-41 171.8 153 62.1
AUR62018656 Chenopodium quinoa HOM05D002388 ORTHO05D004745 9.0e-41 171.0 206 50.0
AUR62007343 Chenopodium quinoa HOM05D002388 ORTHO05D004745 1.2e-40 170.6 204 48.0
Gohir.A03G000041 Gossypium hirsutum HOM05D002388 ORTHO05D004745 1.5e-40 170.2 204 49.5
BcaB02g09426 Brassica carinata HOM05D002388 ORTHO05D004745 2.6e-40 169.5 200 51.0
Lsat_1_v5_gn_6_95801 Lactuca sativa HOM05D002388 ORTHO05D004745 4.5e-40 168.7 221 47.1
ECA233G5493 Erigeron canadensis HOM05D002388 ORTHO05D004745 7.6e-40 167.9 197 48.7
CARHR129630 Cardamine hirsuta HOM05D002388 ORTHO05D004745 1.3e-39 167.2 209 46.9
PSO384G0605 Papaver somniferum HOM05D002388 ORTHO05D004745 2.2e-39 166.4 172 52.3
Ciclev10003570m.g Citrus clementina HOM05D002388 ORTHO05D004745 6.5e-39 164.9 116 70.7
BcaC02g11653 Brassica carinata HOM05D002388 ORTHO05D004745 1.1e-38 164.1 207 49.3
C04p12700 Brassica napus HOM05D002388 ORTHO05D004745 1.1e-38 164.1 207 49.3
BolC4t22918H Brassica oleracea HOM05D002388 ORTHO05D004745 1.1e-38 164.1 207 49.3
HanXRQChr13g0419911 Helianthus annuus HOM05D002388 ORTHO05D004745 1.1e-38 164.1 204 47.5
AL4G31530 Arabidopsis lyrata HOM05D002388 ORTHO05D004745 1.9e-38 163.3 200 47.5
Sabra03G0064500 Salix brachista HOM05D002388 ORTHO05D004745 9.3e-38 161.0 328 37.2
Haze_09168 Corylus avellana HOM05D002388 ORTHO05D004745 2.1e-37 159.8 153 57.5
A05p10250 Brassica napus HOM05D002388 ORTHO05D004745 3.5e-37 159.1 206 46.6
BraA05t19965Z Brassica rapa HOM05D002388 ORTHO05D004745 3.5e-37 159.1 206 46.6
Carub.0004s1717 Capsella rubella HOM05D002388 ORTHO05D004745 6.1e-37 158.3 201 47.8
HPP92_025448 Vanilla planifolia HOM05D002388 ORTHO05D004745 1.1e-35 154.1 206 45.6
PGR042G2052 Punica granatum HOM05D002388 ORTHO05D004745 1.9e-35 153.3 201 46.8
Zm00001eb208800 Zea mays HOM05D002388 ORTHO05D004745 3.3e-35 152.5 200 48.0
AT2G35480 Arabidopsis thaliana HOM05D002388 ORTHO05D004745 5.7e-35 151.8 198 43.9
CsaV3_3G048910 Cucumis sativus L. HOM05D002388 ORTHO05D004745 2.2e-34 149.8 199 44.7
CDE02G3148 Ceratophyllum demersum HOM05D002388 ORTHO05D004745 6.9e-33 144.8 143 53.8
unitig_21.g20893 Utricularia gibba HOM05D005023 ORTHO05D004745 1.2e-32 144.1 187 44.4
ECA240G1207 Erigeron canadensis HOM05D002388 ORTHO05D004745 1.1e-30 137.5 177 45.8
ATR0829G180 Amborella trichopoda HOM05D002388 ORTHO05D004745 3.2e-30 136.0 149 51.0
SEGI_33523 Sequoiadendron giganteum HOM05D002388 ORTHO05D004745 2.1e-29 133.3 94 69.1
TPR.G3332 Trifolium pratense HOM05D000188 ORTHO05D000362 3.6e-29 132.5 71 87.3
Pp3c21_10750 Physcomitrium patens HOM05D002388 ORTHO05D004745 3.0e-28 129.4 116 56.0
Pp3c18_19000 Physcomitrium patens HOM05D002388 ORTHO05D004745 2.0e-27 126.7 100 62.0
Ciclev10003604m.g Citrus clementina HOM05D002388 ORTHO05D004745 5.7e-27 125.2 154 48.7
DCAR_004282 Daucus carota HOM05D002388 ORTHO05D004745 1.7e-26 123.6 151 44.4
DCAR_008237 Daucus carota HOM05D002388 ORTHO05D004745 1.7e-26 123.6 161 42.2
Mapoly0149s0010 Marchantia polymorpha HOM05D002388 ORTHO05D004745 3.7e-26 122.5 94 62.8
ClCG09G011710 Citrullus lanatus HOM05D002388 ORTHO05D004745 1.4e-25 120.6 201 38.3
AagrBONN_evm.TU.Sc2ySwM_362.667 Anthoceros agrestis HOM05D002388 ORTHO05D004745 2.4e-25 119.8 90 60.0
Lj8A306G57 Lonicera japonica HOM05D002388 ORTHO05D004745 9.1e-25 117.9 154 44.8
SMO347G0656 Selaginella moellendorffii HOM05D002388 ORTHO05D004745 1.5e-24 117.1 88 62.5
Os02g0127900 Oryza sativa ssp. japonica HOM05D002388 ORTHO05D004745 7.7e-24 114.8 155 47.7
CAN.G1298.37 Capsicum annuum HOM05D002388 ORTHO05D004745 2.2e-23 113.2 167 38.3
MELO3C013831.2 Cucumis melo HOM05D002388 ORTHO05D004745 1.0e-20 104.4 137 46.0
Hund11196 Selenicereus undatus HOM05D002388 ORTHO05D004745 1.1e-19 100.9 167 39.5
SHI07361 Sapria himalayana HOM05D002388 ORTHO05D000131 9.1e-17 91.3 100 46.0
Hma1.2p1_0870F.1_g230820 Hydrangea macrophylla HOM05D002388 ORTHO05D004745 3.5e-16 89.4 124 47.6
Actinidia07899 Actinidia chinensis HOM05D002388 ORTHO05D004745 1.2e-13 80.9 73 56.2
Sed0007566 Sechium edule HOM05D002388 ORTHO05D004745 1.0e-12 77.8 197 35.5
Hma1.2p1_0572F.1_g181210 Hydrangea macrophylla HOM05D002388 ORTHO05D004745 4.4e-11 72.4 44 79.5
Hma1.2p1_3278F.1_g334816 Hydrangea macrophylla HOM05D002388 ORTHO05D004745 4.4e-11 72.4 44 79.5
Lj8C306G7 Lonicera japonica HOM05D002388 ORTHO05D004745 5.7e-11 72.0 44 79.5
SHI07360 Sapria himalayana HOM05D002388 ORTHO05D000001 1.7e-10 70.5 52 63.5
CBR_g48716 Chara braunii HOM05D002388 ORTHO05D004745 6.3e-10 68.6 84 42.9
Haze_08149 Corylus avellana HOM05D007538 ORTHO05D009464 6.3e-10 68.6 40 80.0
AL1G46410 Arabidopsis lyrata HOM05D002388 ORTHO05D004745 7.2e-06 55.1 125 34.4


User provided reference genes

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