Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G33019 Trifolium pratense HOM05D001386 ORTHO05D035039 1.6e-103 379.4 185 100.0
DCAR_032382 Daucus carota HOM05D002456 ORTHO05D045065 3.1e-51 205.7 185 60.0
DCAR_007801 Daucus carota HOM05D001386 ORTHO05D035039 4.8e-44 181.8 167 58.7
TPR.G12471 Trifolium pratense HOM05D002456 ORTHO05D045065 1.5e-29 133.7 120 58.3
DCAR_024987 Daucus carota HOM05D001386 ORTHO05D035039 4.2e-16 89.0 100 51.0
THA.LOC104810267 Tarenaya hassleriana HOM05D001386 ORTHO05D004014 6.8e-14 81.6 155 32.3
Aa31LG10G140 Aethionema arabicum HOM05D001386 ORTHO05D004014 1.5e-13 80.5 155 32.9
THA.LOC104816144 Tarenaya hassleriana HOM05D001386 ORTHO05D004014 2.6e-13 79.7 155 32.3
Thhalv10011387m.g Eutrema salsugineum HOM05D001386 ORTHO05D004014 3.4e-13 79.3 155 33.5
SHI26313 Sapria himalayana HOM05D001386 ORTHO05D004014 3.4e-13 79.3 155 32.9
Sp1g41760 Schrenkiella parvula HOM05D001386 ORTHO05D004014 3.4e-13 79.3 155 32.9
Carub.0001s4472 Capsella rubella HOM05D001386 ORTHO05D004014 5.7e-13 78.6 152 32.9
BcaC08g43679 Brassica carinata HOM05D001386 ORTHO05D004014 7.5e-13 78.2 155 32.9
BolC3t21638H Brassica oleracea HOM05D001386 ORTHO05D004014 7.5e-13 78.2 155 32.9
BraA08t32066Z Brassica rapa HOM05D001386 ORTHO05D004014 7.5e-13 78.2 155 32.9
BraSC56t46383Z Brassica rapa HOM05D001386 ORTHO05D004014 7.5e-13 78.2 155 32.9
Potri.015G092900 Populus trichocarpa HOM05D001386 ORTHO05D004014 9.8e-13 77.8 155 32.3
AT1G56110 Arabidopsis thaliana HOM05D001386 ORTHO05D004014 1.3e-12 77.4 155 32.3
C06p10990 Brassica napus HOM05D001386 ORTHO05D004014 1.7e-12 77.0 155 32.3
Nitab4.5_0001338g0160 Nicotiana tabacum HOM05D001386 ORTHO05D004014 2.2e-12 76.6 155 34.2
Nitab4.5_0013216g0010 Nicotiana tabacum HOM05D001386 ORTHO05D004014 2.2e-12 76.6 155 34.2
Prupe.5G153500 Prunus persica HOM05D001386 ORTHO05D004014 2.2e-12 76.6 155 32.3
AL1G64380 Arabidopsis lyrata HOM05D001386 ORTHO05D004014 2.8e-12 76.3 155 32.3
DCAR_021613 Daucus carota HOM05D001386 ORTHO05D004014 2.8e-12 76.3 155 30.3
Hund10178 Selenicereus undatus HOM05D001386 ORTHO05D004014 4.8e-12 75.5 155 32.3
ClCG06G017770 Citrullus lanatus HOM05D001386 ORTHO05D004014 6.3e-12 75.1 155 32.3
Duzib068G0731 Durio zibethinus HOM05D001386 ORTHO05D004014 6.3e-12 75.1 155 31.0
Gohir.A07G052200 Gossypium hirsutum HOM05D001386 ORTHO05D004014 6.3e-12 75.1 155 31.0
Lj9A707T56 Lonicera japonica HOM05D001386 ORTHO05D004014 6.3e-12 75.1 157 31.2
BcaB04g16920 Brassica carinata HOM05D001386 ORTHO05D004014 8.3e-12 74.7 155 32.3
Migut.D01257 Erythranthe guttata HOM05D001386 ORTHO05D004014 8.3e-12 74.7 155 32.9
Peaxi162Scf00673g00440 Petunia axillaris HOM05D001386 ORTHO05D004014 8.3e-12 74.7 155 32.9
Sopen01g044070 Solanum pennellii HOM05D001386 ORTHO05D004014 8.3e-12 74.7 155 34.2
Potri.012G095400 Populus trichocarpa HOM05D001386 ORTHO05D004014 1.1e-11 74.3 155 32.3
COL.COLO4_28077 Corchorus olitorius HOM05D001386 ORTHO05D004014 1.4e-11 73.9 155 31.0
Lj9C476G21 Lonicera japonica HOM05D001386 ORTHO05D004014 1.4e-11 73.9 157 31.8
Sc22g0004190 Simmondsia chinensis HOM05D001386 ORTHO05D004014 1.4e-11 73.9 155 32.3
TWI39G0283 Tripterygium wilfordii HOM05D001386 ORTHO05D004014 1.4e-11 73.9 155 31.6
HPP92_024996 Vanilla planifolia HOM05D001386 ORTHO05D004014 1.4e-11 73.9 155 32.3
CSS0000356 Camellia sinensis var. sinensis HOM05D001386 ORTHO05D004014 1.8e-11 73.6 155 32.3
Hma1.2p1_0014F.1_g009690 Hydrangea macrophylla HOM05D001386 ORTHO05D004014 1.8e-11 73.6 157 31.8
MELO3C026228.2 Cucumis melo HOM05D001386 ORTHO05D004014 2.4e-11 73.2 155 32.3
CsaV3_1G000680 Cucumis sativus L. HOM05D001386 ORTHO05D004014 2.4e-11 73.2 155 32.3
Manes.14G053300 Manihot esculenta HOM05D001386 ORTHO05D004014 2.4e-11 73.2 155 31.0
Solyc01g100570.4 Solanum lycopersicum HOM05D001386 ORTHO05D004014 2.4e-11 73.2 155 33.5
TWI14G0111 Tripterygium wilfordii HOM05D001386 ORTHO05D004014 2.4e-11 73.2 155 31.0
GSVIVG01008506001 Vitis vinifera HOM05D001386 ORTHO05D004014 2.4e-11 73.2 155 31.6
CiPaw.12G037600 Carya illinoinensis HOM05D001386 ORTHO05D004014 3.1e-11 72.8 155 32.3
Dinv11152 Davidia involucrata HOM05D001386 ORTHO05D004014 3.1e-11 72.8 157 31.8
Gohir.D07G056700 Gossypium hirsutum HOM05D001386 ORTHO05D004014 3.1e-11 72.8 154 30.5
Gorai.001G060200 Gossypium raimondii HOM05D001386 ORTHO05D004014 3.1e-11 72.8 154 30.5
Manes.06G117900 Manihot esculenta HOM05D001386 ORTHO05D004014 3.1e-11 72.8 155 31.0
PGSC0003DMG400002765 Solanum tuberosum HOM05D001386 ORTHO05D004014 3.1e-11 72.8 155 34.2
Thecc.03G126200 Theobroma cacao HOM05D001386 ORTHO05D004014 3.1e-11 72.8 155 29.7
Atru.chr9.1089 Acer truncatum HOM05D001386 ORTHO05D004014 4.1e-11 72.4 155 30.3
CSS0038009 Camellia sinensis var. sinensis HOM05D001386 ORTHO05D004014 4.1e-11 72.4 155 31.0
Carub.0003s1222 Capsella rubella HOM05D001386 ORTHO05D004014 4.1e-11 72.4 155 32.3
Cpa.g.sc2085.2 Carica papaya HOM05D001386 ORTHO05D004014 4.1e-11 72.4 155 32.3
Duzib205G1332 Durio zibethinus HOM05D001386 ORTHO05D004014 4.1e-11 72.4 155 29.7
Hund02424 Selenicereus undatus HOM05D001386 ORTHO05D004014 4.1e-11 72.4 156 32.7
BcaC01g04038 Brassica carinata HOM05D001386 ORTHO05D004014 5.4e-11 72.0 155 32.3
CSS0012516 Camellia sinensis var. sinensis HOM05D001386 ORTHO05D004014 5.4e-11 72.0 155 31.6
A03p37840 Brassica napus HOM05D001386 ORTHO05D004014 7.0e-11 71.6 155 32.3
C03p45900 Brassica napus HOM05D001386 ORTHO05D004014 7.0e-11 71.6 155 32.3
BolC3t16867H Brassica oleracea HOM05D001386 ORTHO05D004014 7.0e-11 71.6 155 32.3
Gohir.A11G035800 Gossypium hirsutum HOM05D001386 ORTHO05D004014 7.0e-11 71.6 155 30.3
Gohir.D11G039400 Gossypium hirsutum HOM05D001386 ORTHO05D004014 7.0e-11 71.6 155 30.3
Gorai.007G042300 Gossypium raimondii HOM05D001386 ORTHO05D004014 7.0e-11 71.6 155 30.3
Nitab4.5_0013308g0010 Nicotiana tabacum HOM05D001386 ORTHO05D004014 7.0e-11 71.6 155 32.9
PGR044G2092 Punica granatum HOM05D001386 ORTHO05D004014 7.0e-11 71.6 155 31.6
CAN.G1076.18 Capsicum annuum HOM05D001386 ORTHO05D004014 9.1e-11 71.2 155 33.5
HanXRQChr05g0153931 Helianthus annuus HOM05D001386 ORTHO05D004014 9.1e-11 71.2 155 32.3
Lsat_1_v5_gn_4_76561 Lactuca sativa HOM05D001386 ORTHO05D004014 9.1e-11 71.2 155 32.3
Nitab4.5_0000155g0130 Nicotiana tabacum HOM05D001386 ORTHO05D004014 9.1e-11 71.2 155 32.3
Ciclev10019526m.g Citrus clementina HOM05D001386 ORTHO05D004014 1.2e-10 70.9 155 30.3
Dinv04863 Davidia involucrata HOM05D001386 ORTHO05D004014 1.2e-10 70.9 155 31.0
MD14G1159900 Malus domestica HOM05D001386 ORTHO05D004014 1.2e-10 70.9 155 31.0
TAR622G1164 Trochodendron aralioides HOM05D001386 ORTHO05D004014 1.2e-10 70.9 155 31.0
Nn4g22384 Nelumbo nucifera HOM05D001386 ORTHO05D004014 1.6e-10 70.5 154 32.5
RcHm_v2.0_Chr7g0190581 Rosa chinensis HOM05D001386 ORTHO05D004014 1.6e-10 70.5 155 29.7
Sed0000726 Sechium edule HOM05D001386 ORTHO05D004014 1.6e-10 70.5 155 29.7
AL3G24530 Arabidopsis lyrata HOM05D001386 ORTHO05D004014 2.0e-10 70.1 155 31.6
BcaB07g30088 Brassica carinata HOM05D001386 ORTHO05D004014 2.0e-10 70.1 155 31.6
ECA232G5020 Erigeron canadensis HOM05D001386 ORTHO05D004014 2.0e-10 70.1 155 32.9
QL10p004371 Quercus lobata HOM05D001386 ORTHO05D004014 2.0e-10 70.1 155 31.6
Sed0002077 Sechium edule HOM05D001386 ORTHO05D004014 2.0e-10 70.1 155 32.3
AT3G12860 Arabidopsis thaliana HOM05D001386 ORTHO05D004014 2.7e-10 69.7 155 31.6
Eucgr.K02739 Eucalyptus grandis HOM05D001386 ORTHO05D004014 2.7e-10 69.7 155 31.0
Sp3g11000 Schrenkiella parvula HOM05D001386 ORTHO05D004014 2.7e-10 69.7 155 31.6
TPR.G35172 Trifolium pratense HOM05D040360 ORTHO05D035040 2.7e-10 69.7 149 31.5
TAR374G0987 Trochodendron aralioides HOM05D001386 ORTHO05D004014 2.7e-10 69.7 155 31.6
Cfa018857 Carpinus fangiana HOM05D001386 ORTHO05D004014 3.5e-10 69.3 155 29.7
Haze_07241 Corylus avellana HOM05D001386 ORTHO05D004014 3.5e-10 69.3 155 29.7
unitig_66.g29100 Utricularia gibba HOM05D001386 ORTHO05D004014 3.5e-10 69.3 157 30.6
unitig_736.g23007 Utricularia gibba HOM05D001386 ORTHO05D004014 3.5e-10 69.3 157 30.6
arahy.Tifrunner.gnm1.ann1.T2LSLY Arachis hypogaea HOM05D001386 ORTHO05D004014 4.5e-10 68.9 155 31.6
arahy.Tifrunner.gnm1.ann1.W1WWEB Arachis hypogaea HOM05D001386 ORTHO05D004014 4.5e-10 68.9 155 31.6
MSTRG.9320 Avicennia marina HOM05D001386 ORTHO05D004014 4.5e-10 68.9 157 31.2
BraA03t12939Z Brassica rapa HOM05D001386 ORTHO05D004014 4.5e-10 68.9 155 32.3
Migut.I00515 Erythranthe guttata HOM05D001386 ORTHO05D004014 4.5e-10 68.9 155 31.6
Lsat_1_v5_gn_1_29280 Lactuca sativa HOM05D001386 ORTHO05D004014 4.5e-10 68.9 155 31.0
PSO478G0383 Papaver somniferum HOM05D001386 ORTHO05D004014 4.5e-10 68.9 155 30.3
FvH4_5g07871 Fragaria vesca HOM05D001386 ORTHO05D004014 5.9e-10 68.6 155 29.7
MD06G1145200 Malus domestica HOM05D001386 ORTHO05D004014 5.9e-10 68.6 155 30.3
PSO017G5462 Papaver somniferum HOM05D001386 ORTHO05D004014 5.9e-10 68.6 155 30.3
Aqoxy5G03467 Aquilegia oxysepala HOM05D001386 ORTHO05D004014 7.7e-10 68.2 155 31.0
HanXRQChr09g0273011 Helianthus annuus HOM05D001386 ORTHO05D004014 7.7e-10 68.2 155 31.6
CARHR045860 Cardamine hirsuta HOM05D001386 ORTHO05D004014 1.0e-09 67.8 155 30.3
Cc04_g10000 Coffea canephora HOM05D001386 ORTHO05D004014 1.0e-09 67.8 155 31.0
HanXRQChr16g0497801 Helianthus annuus HOM05D001386 ORTHO05D004014 1.0e-09 67.8 155 31.6
Oeu023478.1 Olea europaea HOM05D001386 ORTHO05D004014 1.0e-09 67.8 155 31.6
SGA_v2.0_scaffold5G02873 Striga asiatica HOM05D001386 ORTHO05D004014 1.0e-09 67.8 157 31.2
unitig_22.g5753 Utricularia gibba HOM05D001386 ORTHO05D004014 1.0e-09 67.8 157 30.6
ATR0686G022 Amborella trichopoda HOM05D001386 ORTHO05D004014 1.3e-09 67.4 155 31.0
DCAR_016408 Daucus carota HOM05D001386 ORTHO05D004014 1.3e-09 67.4 155 28.4
CDE04G1039 Ceratophyllum demersum HOM05D001386 ORTHO05D004014 1.7e-09 67.0 155 29.0
Thhalv10020558m.g Eutrema salsugineum HOM05D001386 ORTHO05D004014 1.7e-09 67.0 155 31.6
Lalb_Chr13g0297371 Lupinus albus HOM05D001386 ORTHO05D004014 1.7e-09 67.0 155 30.3
MBI11_g06762_MAGBIO Magnolia biondii HOM05D001386 ORTHO05D004014 1.7e-09 67.0 155 30.3
Thhalv10004082m.g Eutrema salsugineum HOM05D001386 ORTHO05D004014 2.3e-09 66.6 155 30.3
Lalb_Chr06g0172261 Lupinus albus HOM05D001386 ORTHO05D004014 3.8e-09 65.9 155 29.7
Lalb_Chr07g0183301 Lupinus albus HOM05D001386 ORTHO05D004014 3.8e-09 65.9 155 29.7
MBI15_g10562_MAGBIO Magnolia biondii HOM05D001386 ORTHO05D004014 3.8e-09 65.9 155 29.7
AUR62021844 Chenopodium quinoa HOM05D001386 ORTHO05D004014 5.0e-09 65.5 154 29.2
Lalb_Chr12g0202131 Lupinus albus HOM05D001386 ORTHO05D004014 5.0e-09 65.5 155 29.7
SalBow1G2492 Salvia bowleyana HOM05D001386 ORTHO05D004014 5.0e-09 65.5 155 30.3
PSO063G7389 Papaver somniferum HOM05D001386 ORTHO05D004014 8.6e-09 64.7 155 29.7
Oeu056005.1 Olea europaea HOM05D001386 ORTHO05D004014 1.5e-08 63.9 157 31.2
Psat4g063120 Pisum sativum HOM05D001386 ORTHO05D004014 2.5e-08 63.2 155 30.3
PSO782G3915 Papaver somniferum HOM05D001386 ORTHO05D004014 4.2e-08 62.4 155 29.0
AUR62025915 Chenopodium quinoa HOM05D001386 ORTHO05D004014 5.5e-08 62.0 154 28.6
ECA246G0967 Erigeron canadensis HOM05D001386 ORTHO05D004014 5.5e-08 62.0 151 30.5
TPR.G30017 Trifolium pratense HOM05D001386 ORTHO05D004014 5.5e-08 62.0 155 29.7
Ah.02g115290 Amaranthus hybridus HOM05D001386 ORTHO05D004014 9.5e-08 61.2 155 29.0
AUR62012809 Chenopodium quinoa HOM05D001386 ORTHO05D004014 9.5e-08 61.2 154 28.6
EL10As4g23419 Beta vulgaris HOM05D001386 ORTHO05D004014 1.6e-07 60.5 155 28.4
SGA_v2.0_scaffold37G14621 Striga asiatica HOM05D001386 ORTHO05D004014 3.0e-06 56.2 183 27.3
Actinidia08862 Actinidia chinensis HOM05D001386 ORTHO05D004014 4.0e-06 55.8 146 30.1


User provided reference genes

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