Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G33016 Trifolium pratense HOM05D001425 ORTHO05D001272 2.2e-48 195.3 99 100.0
TPR.G6770 Trifolium pratense HOM05D001425 ORTHO05D001272 3.8e-40 167.9 87 96.6
Medtr8g085150 Medicago truncatula HOM05D001425 ORTHO05D001272 1.5e-36 156.0 98 79.6
Psat0s2741g0080 Pisum sativum HOM05D001425 ORTHO05D001272 7.0e-34 147.1 97 75.3
Ca_17900_v3 Cicer arietinum L. HOM05D001425 ORTHO05D001272 1.9e-31 139.0 93 78.5
Phvul.002G240800 Phaseolus vulgaris HOM05D001425 ORTHO05D001272 7.3e-31 137.1 94 72.3
TPR.G6742 Trifolium pratense HOM05D001425 ORTHO05D001272 1.2e-30 136.3 87 77.0
Glyma.05G160700 Glycine max HOM05D001425 ORTHO05D001272 2.3e-29 132.1 91 71.4
VMungo0251G3022 Vigna mungo HOM05D001425 ORTHO05D001272 3.0e-29 131.7 93 71.0
Medtr8g087020 Medicago truncatula HOM05D001425 ORTHO05D001272 4.0e-29 131.3 95 68.4
Glyma.08G118100 Glycine max HOM05D001425 ORTHO05D001272 1.3e-27 126.3 92 66.3
Psat7g069880 Pisum sativum HOM05D001425 ORTHO05D001272 7.0e-26 120.6 86 72.1
Lalb_Chr07g0186331 Lupinus albus HOM05D001425 ORTHO05D001272 1.6e-25 119.4 94 64.9
Lalb_Chr12g0204971 Lupinus albus HOM05D001425 ORTHO05D001272 5.9e-25 117.5 95 63.2
Lj4g0009651 Lotus japonicus HOM05D001425 ORTHO05D001272 1.3e-24 116.3 87 67.8
arahy.Tifrunner.gnm1.ann1.A8KLXT Arachis hypogaea HOM05D001425 ORTHO05D001272 5.8e-20 100.9 85 58.8
Duzib160G0077 Durio zibethinus HOM05D001425 ORTHO05D001272 2.9e-19 98.6 85 64.7
Gohir.A06G132900 Gossypium hirsutum HOM05D001425 ORTHO05D001272 8.3e-19 97.1 85 60.0
Gohir.D06G138400 Gossypium hirsutum HOM05D001425 ORTHO05D001272 1.1e-18 96.7 83 60.2
Thecc.06G166200 Theobroma cacao HOM05D001425 ORTHO05D001272 1.1e-18 96.7 81 66.7
Gorai.010G160900 Gossypium raimondii HOM05D001425 ORTHO05D001272 1.9e-18 95.9 85 58.8
GSVIVG01021251001 Vitis vinifera HOM05D001425 ORTHO05D001272 5.4e-18 94.4 87 56.3
Duzib235G0112 Durio zibethinus HOM05D001425 ORTHO05D001272 9.2e-18 93.6 85 57.6
TAR626G1246 Trochodendron aralioides HOM05D001425 ORTHO05D001272 1.2e-17 93.2 81 61.7
arahy.Tifrunner.gnm1.ann1.T2RFJB Arachis hypogaea HOM05D001425 ORTHO05D001272 1.6e-17 92.8 95 52.6
CSS0039671 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 1.6e-17 92.8 81 59.3
CiPaw.09G072500 Carya illinoinensis HOM05D001425 ORTHO05D001272 4.6e-17 91.3 85 55.3
COL.COLO4_31243 Corchorus olitorius HOM05D001425 ORTHO05D001272 1.3e-16 89.7 100 51.0
Gorai.011G037600 Gossypium raimondii HOM05D001425 ORTHO05D001272 1.3e-16 89.7 90 55.6
TAR629G2569 Trochodendron aralioides HOM05D001425 ORTHO05D001272 1.7e-16 89.4 77 62.3
Gorai.009G160900 Gossypium raimondii HOM05D001425 ORTHO05D001272 2.3e-16 89.0 86 57.0
Gohir.A05G153700 Gossypium hirsutum HOM05D001425 ORTHO05D001272 3.9e-16 88.2 82 57.3
Gohir.A10G035000 Gossypium hirsutum HOM05D001425 ORTHO05D001272 5.0e-16 87.8 87 56.3
Cfa000649 Carpinus fangiana HOM05D001425 ORTHO05D001272 8.6e-16 87.0 81 51.9
Nn1g04511 Nelumbo nucifera HOM05D001425 ORTHO05D001272 1.1e-15 86.7 81 58.0
QL05p049746 Quercus lobata HOM05D001425 ORTHO05D001272 1.1e-15 86.7 82 53.7
Gohir.D10G035700 Gossypium hirsutum HOM05D001425 ORTHO05D001272 1.5e-15 86.3 97 53.6
Nn3g21110 Nelumbo nucifera HOM05D001425 ORTHO05D001272 1.9e-15 85.9 81 59.3
TWI09G0354 Tripterygium wilfordii HOM05D001425 ORTHO05D001272 3.3e-15 85.1 93 53.8
Haze_06180 Corylus avellana HOM05D001425 ORTHO05D001272 5.6e-15 84.3 78 52.6
Gohir.D05G156400 Gossypium hirsutum HOM05D001425 ORTHO05D001272 1.2e-14 83.2 82 57.3
Eucgr.D00475 Eucalyptus grandis HOM05D001425 ORTHO05D001272 2.8e-14 82.0 87 54.0
Prupe.4G066300 Prunus persica HOM05D001425 ORTHO05D001272 2.8e-14 82.0 77 57.1
Dinv12758 Davidia involucrata HOM05D001425 ORTHO05D001272 3.6e-14 81.6 79 54.4
MD10G1275900 Malus domestica HOM05D001425 ORTHO05D001272 4.7e-14 81.3 90 52.2
FvH4_3g07370 Fragaria vesca HOM05D001425 ORTHO05D001272 1.1e-13 80.1 82 54.9
FAN11G3009 Fragaria x ananassa HOM05D001425 ORTHO05D001272 1.4e-13 79.7 82 54.9
FAN16G2157 Fragaria x ananassa HOM05D001425 ORTHO05D001272 1.4e-13 79.7 82 53.7
Sed0000998 Sechium edule HOM05D001425 ORTHO05D001272 1.4e-13 79.7 87 57.5
THA.LOC104812642 Tarenaya hassleriana HOM05D001425 ORTHO05D001272 1.8e-13 79.3 92 52.2
Peaxi162Scf00405g00117 Petunia axillaris HOM05D001425 ORTHO05D001272 2.3e-13 79.0 87 54.0
FAN13G2418 Fragaria x ananassa HOM05D001425 ORTHO05D001272 3.1e-13 78.6 82 53.7
FAN21G1795 Fragaria x ananassa HOM05D001425 ORTHO05D001272 3.1e-13 78.6 82 53.7
FAN25G1823 Fragaria x ananassa HOM05D001425 ORTHO05D001272 3.1e-13 78.6 82 53.7
Sed0026621 Sechium edule HOM05D001425 ORTHO05D001272 3.1e-13 78.6 76 57.9
Actinidia35598 Actinidia chinensis HOM05D001425 ORTHO05D001272 4.0e-13 78.2 85 50.6
Hma1.2p1_0829F.1_g225230 Hydrangea macrophylla HOM05D001425 ORTHO05D001272 4.0e-13 78.2 84 51.2
Nitab4.5_0002458g0050 Nicotiana tabacum HOM05D001425 ORTHO05D001272 5.2e-13 77.8 82 52.4
Cc02_g15540 Coffea canephora HOM05D001425 ORTHO05D001272 6.8e-13 77.4 86 48.8
Sabra11G0058000 Salix brachista HOM05D001425 ORTHO05D001272 1.2e-12 76.6 82 52.4
ClCG01G023870 Citrullus lanatus HOM05D001425 ORTHO05D001272 1.5e-12 76.3 91 53.8
RcHm_v2.0_Chr5g0011571 Rosa chinensis HOM05D001425 ORTHO05D001272 1.5e-12 76.3 80 52.5
Dinv32343 Davidia involucrata HOM05D001425 ORTHO05D001272 2.0e-12 75.9 89 50.6
THA.LOC104820606 Tarenaya hassleriana HOM05D001425 ORTHO05D001272 2.0e-12 75.9 96 47.9
Potri.011G070000 Populus trichocarpa HOM05D001425 ORTHO05D001272 2.6e-12 75.5 79 54.4
Ciclev10016999m.g Citrus clementina HOM05D001425 ORTHO05D001272 3.4e-12 75.1 89 51.7
Sopen03g002050 Solanum pennellii HOM05D001425 ORTHO05D001272 3.4e-12 75.1 87 51.7
Manes.16G038700 Manihot esculenta HOM05D001425 ORTHO05D001272 4.4e-12 74.7 89 51.7
Atru.chr10.1575 Acer truncatum HOM05D001425 ORTHO05D001272 7.5e-12 73.9 82 56.1
MELO3C007201.2 Cucumis melo HOM05D001425 ORTHO05D001272 7.5e-12 73.9 87 51.7
CsaV3_6G051020 Cucumis sativus L. HOM05D001425 ORTHO05D001272 1.7e-11 72.8 87 50.6
Nitab4.5_0005428g0040 Nicotiana tabacum HOM05D001425 ORTHO05D001272 1.7e-11 72.8 79 49.4
Potri.004G060800 Populus trichocarpa HOM05D001425 ORTHO05D001272 1.7e-11 72.8 83 49.4
PGSC0003DMG400026751 Solanum tuberosum HOM05D001425 ORTHO05D001272 1.7e-11 72.8 87 50.6
MD05G1295800 Malus domestica HOM05D001425 ORTHO05D001272 2.9e-11 72.0 81 54.3
Solyc03g006040.3 Solanum lycopersicum HOM05D001425 ORTHO05D001272 3.7e-11 71.6 87 49.4
Actinidia16777 Actinidia chinensis HOM05D001425 ORTHO05D001272 4.9e-11 71.2 91 47.3
MSTRG.16167 Avicennia marina HOM05D001425 ORTHO05D001272 4.9e-11 71.2 84 47.6
SalBow7G3660 Salvia bowleyana HOM05D001425 ORTHO05D001272 6.4e-11 70.9 84 48.8
CAN.G866.32 Capsicum annuum HOM05D001425 ORTHO05D001272 1.1e-10 70.1 88 46.6
Sabra04G0040100 Salix brachista HOM05D001425 ORTHO05D001272 1.1e-10 70.1 80 48.8
Oeu041734.1 Olea europaea HOM05D001425 ORTHO05D001272 1.4e-10 69.7 90 43.3
Oeu039884.1 Olea europaea HOM05D001425 ORTHO05D001272 1.9e-10 69.3 90 43.3
Cpa.g.sc7.94 Carica papaya HOM05D001425 ORTHO05D001272 3.2e-10 68.6 94 45.7
PGR042G0512 Punica granatum HOM05D001425 ORTHO05D001272 3.2e-10 68.6 83 50.6
MSTRG.13230 Avicennia marina HOM05D001425 ORTHO05D001272 4.1e-10 68.2 85 47.1
Thhalv10009779m.g Eutrema salsugineum HOM05D001425 ORTHO05D001272 7.1e-10 67.4 82 47.6
SGA_v2.0_scaffold1G00076 Striga asiatica HOM05D001425 ORTHO05D001272 9.2e-10 67.0 86 47.7
MSTRG.7426 Avicennia marina HOM05D001425 ORTHO05D001272 1.2e-09 66.6 80 46.2
Manes.17G058800 Manihot esculenta HOM05D001425 ORTHO05D001272 1.6e-09 66.2 76 48.7
CARHR028590 Cardamine hirsuta HOM05D001425 ORTHO05D001272 2.7e-09 65.5 82 48.8
Oeu060166.1 Olea europaea HOM05D001425 ORTHO05D001272 2.7e-09 65.5 78 47.4
TAR626G0916 Trochodendron aralioides HOM05D001425 ORTHO05D001272 2.7e-09 65.5 62 56.5
Aa31LG6G6260 Aethionema arabicum HOM05D001425 ORTHO05D001272 3.5e-09 65.1 89 48.3
AT1G29270 Arabidopsis thaliana HOM05D001425 ORTHO05D001272 3.5e-09 65.1 81 48.1
BraA07t28870Z Brassica rapa HOM05D001425 ORTHO05D001272 3.5e-09 65.1 77 49.4
PSO782G3214 Papaver somniferum HOM05D001425 ORTHO05D001272 3.5e-09 65.1 86 46.5
BcaC06g35421 Brassica carinata HOM05D001425 ORTHO05D001272 6.0e-09 64.3 77 49.4
A07p10760 Brassica napus HOM05D001425 ORTHO05D001272 6.0e-09 64.3 77 49.4
Carub.0001s2748 Capsella rubella HOM05D001425 ORTHO05D001272 6.0e-09 64.3 81 49.4
C07p16370 Brassica napus HOM05D001425 ORTHO05D001272 7.8e-09 63.9 77 49.4
BolC7t42131H Brassica oleracea HOM05D001425 ORTHO05D001272 7.8e-09 63.9 77 49.4
GSVIVG01020751001 Vitis vinifera HOM05D001425 ORTHO05D001272 7.8e-09 63.9 79 48.1
AL1G43060 Arabidopsis lyrata HOM05D001425 ORTHO05D001272 1.0e-08 63.5 83 47.0
PSO170G6757 Papaver somniferum HOM05D001425 ORTHO05D001272 1.0e-08 63.5 88 44.3
Sp1g25200 Schrenkiella parvula HOM05D001425 ORTHO05D001272 1.7e-08 62.8 82 47.6
BcaB03g13893 Brassica carinata HOM05D001425 ORTHO05D001272 8.6e-08 60.5 77 45.5
Ah.09g233510 Amaranthus hybridus HOM05D037095 ORTHO05D001272 2.5e-07 58.9 77 46.8
EL10Ac8g20563 Beta vulgaris HOM05D001425 ORTHO05D001272 3.3e-07 58.5 84 45.2
Hund21446 Selenicereus undatus HOM05D001425 ORTHO05D001272 3.3e-07 58.5 92 40.2
DCAR_005135 Daucus carota HOM05D001425 ORTHO05D001272 4.3e-07 58.2 80 45.0
ATR1127G099 Amborella trichopoda HOM05D001425 ORTHO05D001272 7.3e-07 57.4 88 38.6
Eucgr.A00656 Eucalyptus grandis HOM05D001425 ORTHO05D001272 1.2e-06 56.6 85 44.7
Prupe.6G045200 Prunus persica HOM05D001425 ORTHO05D001272 2.1e-06 55.8 80 43.8
CDE06G2729 Ceratophyllum demersum HOM05D001425 ORTHO05D001272 2.8e-06 55.5 76 43.4
MBI15_g26251_MAGBIO Magnolia biondii HOM05D001425 ORTHO05D001272 4.7e-06 54.7 82 43.9


User provided reference genes

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