Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G330 Trifolium pratense HOM05D004723 ORTHO05D006176 1.4e-81 306.2 156 100.0
Medtr4g073330 Medicago truncatula HOM05D004723 ORTHO05D006176 8.4e-42 174.1 270 41.9
TPR.G36124 Trifolium pratense HOM05D004723 ORTHO05D006176 1.4e-41 173.3 93 94.6
TPR.G3121 Trifolium pratense HOM05D004723 ORTHO05D006176 9.0e-36 154.1 83 94.0
Psat7g090000 Pisum sativum HOM05D004723 ORTHO05D006176 2.9e-26 122.5 106 61.3
Lj4g0028127 Lotus japonicus HOM05D004723 ORTHO05D006176 1.1e-25 120.6 282 33.3
Glyma.16G122800 Glycine max HOM05D004723 ORTHO05D006176 1.9e-25 119.8 105 60.0
Lalb_Chr16g0391491 Lupinus albus HOM05D004723 ORTHO05D006176 3.2e-25 119.0 283 32.2
TPR.G21433 Trifolium pratense HOM05D004723 ORTHO05D006176 9.4e-25 117.5 66 86.4
Ca_18264_v3 Cicer arietinum L. HOM05D004723 ORTHO05D006176 1.6e-24 116.7 129 54.3
arahy.Tifrunner.gnm1.ann1.DG5MW5 Arachis hypogaea HOM05D004723 ORTHO05D006176 7.9e-24 114.4 283 30.4
arahy.Tifrunner.gnm1.ann1.7VD04T Arachis hypogaea HOM05D004723 ORTHO05D006176 1.0e-23 114.0 283 31.4
Glyma.02G045200 Glycine max HOM05D004723 ORTHO05D006176 1.4e-23 113.6 270 31.5
Haze_03712 Corylus avellana HOM05D004723 ORTHO05D006176 1.8e-23 113.2 281 31.7
Medtr4g096820 Medicago truncatula HOM05D004723 ORTHO05D006176 1.8e-23 113.2 90 63.3
Phvul.003G266400 Phaseolus vulgaris HOM05D004723 ORTHO05D006176 1.1e-22 110.5 77 67.5
TPR.G4863 Trifolium pratense HOM05D004723 ORTHO05D006176 2.6e-22 109.4 104 54.8
VMungo0251G3240 Vigna mungo HOM05D004723 ORTHO05D006176 2.6e-22 109.4 280 28.9
TWI09G0244 Tripterygium wilfordii HOM05D004723 ORTHO05D006176 5.7e-22 108.2 278 31.7
TAR628G1348 Trochodendron aralioides HOM05D004723 ORTHO05D006176 7.4e-22 107.8 280 31.1
Sed0008382 Sechium edule HOM05D004723 ORTHO05D006176 2.8e-21 105.9 105 56.2
Potri.005G108800 Populus trichocarpa HOM05D004723 ORTHO05D006176 3.7e-21 105.5 282 31.9
Sabra05G0089200 Salix brachista HOM05D004723 ORTHO05D006176 4.8e-21 105.1 282 31.2
CiPaw.07G062200 Carya illinoinensis HOM05D004723 ORTHO05D006176 6.3e-21 104.8 278 29.5
ECA232G2222 Erigeron canadensis HOM05D004723 ORTHO05D006176 6.3e-21 104.8 107 53.3
Duzib147G1420 Durio zibethinus HOM05D004723 ORTHO05D006176 1.1e-20 104.0 281 30.2
Thecc.08G139800 Theobroma cacao HOM05D004723 ORTHO05D006176 1.1e-20 104.0 107 56.1
ClCG05G000690 Citrullus lanatus HOM05D004723 ORTHO05D006176 1.4e-20 103.6 105 55.2
Gohir.A05G376600 Gossypium hirsutum HOM05D004723 ORTHO05D006176 1.4e-20 103.6 107 55.1
FAN23G0842 Fragaria x ananassa HOM05D004723 ORTHO05D006176 4.1e-20 102.1 105 52.4
Gorai.012G044400 Gossypium raimondii HOM05D004723 ORTHO05D006176 4.1e-20 102.1 283 29.3
Prupe.7G173800 Prunus persica HOM05D004723 ORTHO05D006176 4.1e-20 102.1 79 63.3
QL06p051414 Quercus lobata HOM05D004723 ORTHO05D006176 4.1e-20 102.1 84 64.3
Ciclev10025027m.g Citrus clementina HOM05D004723 ORTHO05D006176 5.3e-20 101.7 107 49.5
BcaC05g30387 Brassica carinata HOM05D004723 ORTHO05D006176 7.0e-20 101.3 102 52.0
Gohir.D04G039432 Gossypium hirsutum HOM05D004723 ORTHO05D006176 7.0e-20 101.3 103 56.3
Atru.chr3.886 Acer truncatum HOM05D004723 ORTHO05D006176 9.1e-20 100.9 281 29.9
Atru.chr3.897 Acer truncatum HOM05D004723 ORTHO05D006176 9.1e-20 100.9 281 29.9
BolC5t35121H Brassica oleracea HOM05D004723 ORTHO05D006176 9.1e-20 100.9 102 51.0
Cpa.g.sc6.304 Carica papaya HOM05D004723 ORTHO05D006176 9.1e-20 100.9 296 29.7
C09p75390 Brassica napus HOM05D004723 ORTHO05D006176 1.2e-19 100.5 102 51.0
COL.COLO4_34179 Corchorus olitorius HOM05D004723 ORTHO05D006176 2.0e-19 99.8 145 44.1
Nn5g30820 Nelumbo nucifera HOM05D004723 ORTHO05D006176 2.0e-19 99.8 280 30.7
PGR119G2074 Punica granatum HOM05D004723 ORTHO05D006176 2.0e-19 99.8 106 54.7
RcHm_v2.0_Chr2g0098611 Rosa chinensis HOM05D004723 ORTHO05D006176 2.0e-19 99.8 105 51.4
MD15G1238700 Malus domestica HOM05D004723 ORTHO05D006176 2.6e-19 99.4 77 61.0
Hund14070 Selenicereus undatus HOM05D004723 ORTHO05D006176 3.5e-19 99.0 67 68.7
A05p44800 Brassica napus HOM05D004723 ORTHO05D006176 4.5e-19 98.6 105 49.5
BraA05t23177Z Brassica rapa HOM05D004723 ORTHO05D006176 4.5e-19 98.6 105 49.5
Cc07_g11220 Coffea canephora HOM05D004723 ORTHO05D006176 4.5e-19 98.6 106 54.7
AT3G01160 Arabidopsis thaliana HOM05D004723 ORTHO05D006176 5.9e-19 98.2 106 47.2
Manes.10G142700 Manihot esculenta HOM05D004723 ORTHO05D006176 5.9e-19 98.2 107 50.5
EL10Ac6g15170 Beta vulgaris HOM05D004723 ORTHO05D006176 7.7e-19 97.8 68 66.2
Cfa007019 Carpinus fangiana HOM05D004723 ORTHO05D006176 7.7e-19 97.8 281 29.5
AUR62018009 Chenopodium quinoa HOM05D004723 ORTHO05D006176 7.7e-19 97.8 256 32.4
Eucgr.I02314 Eucalyptus grandis HOM05D004723 ORTHO05D006176 7.7e-19 97.8 281 29.5
FvH4_1g11200 Fragaria vesca HOM05D004723 ORTHO05D006176 1.0e-18 97.4 76 63.2
FAN19G1371 Fragaria x ananassa HOM05D004723 ORTHO05D006176 1.0e-18 97.4 76 63.2
AL3G11100 Arabidopsis lyrata HOM05D004723 ORTHO05D006176 1.3e-18 97.1 106 48.1
CsaV3_3G007910 Cucumis sativus L. HOM05D004723 ORTHO05D006176 1.3e-18 97.1 105 51.4
BcaC05g30489 Brassica carinata HOM05D004723 ORTHO05D006176 1.7e-18 96.7 109 48.6
MELO3C006009.2 Cucumis melo HOM05D004723 ORTHO05D006176 1.7e-18 96.7 280 29.6
Gohir.1Z049326 Gossypium hirsutum HOM05D004723 ORTHO05D006176 1.7e-18 96.7 258 31.4
Sp3g00960 Schrenkiella parvula HOM05D004723 ORTHO05D006176 1.7e-18 96.7 82 57.3
Carub.0003s0100 Capsella rubella HOM05D004723 ORTHO05D006176 2.2e-18 96.3 67 65.7
Lj4A224T28 Lonicera japonica HOM05D004723 ORTHO05D006176 2.2e-18 96.3 103 51.5
FAN26G3228 Fragaria x ananassa HOM05D004723 ORTHO05D006176 2.9e-18 95.9 105 49.5
CANSAT25G3056 Cannabis sativa HOM05D004723 ORTHO05D006176 3.8e-18 95.5 79 60.8
MD02G1124600 Malus domestica HOM05D004723 ORTHO05D006176 3.8e-18 95.5 107 48.6
ATR0665G361 Amborella trichopoda HOM05D004723 ORTHO05D006176 5.0e-18 95.1 100 49.0
Thhalv10020182m.g Eutrema salsugineum HOM05D004723 ORTHO05D006176 6.5e-18 94.7 69 62.3
Lsat_1_v5_gn_4_144101 Lactuca sativa HOM05D004723 ORTHO05D006176 8.5e-18 94.4 105 49.5
MSTRG.10980 Avicennia marina HOM05D004723 ORTHO05D006176 1.4e-17 93.6 265 30.2
Aqoxy6G02087 Aquilegia oxysepala HOM05D004723 ORTHO05D006176 2.5e-17 92.8 105 47.6
GSVIVG01007226001 Vitis vinifera HOM05D004723 ORTHO05D006176 2.5e-17 92.8 102 46.1
Sc07g0001170 Simmondsia chinensis HOM05D004723 ORTHO05D006176 4.2e-17 92.0 66 65.2
Aa31LG5G12460 Aethionema arabicum HOM05D004723 ORTHO05D006176 7.2e-17 91.3 105 44.8
HanXRQChr09g0257321 Helianthus annuus HOM05D004723 ORTHO05D006176 7.2e-17 91.3 108 49.1
Rhsim08G0030800 Rhododendron simsii HOM05D004723 ORTHO05D006176 7.2e-17 91.3 107 46.7
Dinv40130 Davidia involucrata HOM05D004723 ORTHO05D006176 9.4e-17 90.9 283 27.2
Actinidia35669 Actinidia chinensis HOM05D004723 ORTHO05D006176 1.2e-16 90.5 89 51.7
Ah.01g003790 Amaranthus hybridus HOM05D004723 ORTHO05D006176 1.2e-16 90.5 63 66.7
BcaC01g04506 Brassica carinata HOM05D004723 ORTHO05D006176 1.2e-16 90.5 66 60.6
CSS0036730 Camellia sinensis var. sinensis HOM05D004723 ORTHO05D006176 1.6e-16 90.1 283 28.3
Nitab4.5_0006899g0060 Nicotiana tabacum HOM05D004723 ORTHO05D006176 1.6e-16 90.1 106 47.2
CDE05G0976 Ceratophyllum demersum HOM05D004723 ORTHO05D006176 2.1e-16 89.7 129 41.1
AUR62003701 Chenopodium quinoa HOM05D004723 ORTHO05D006176 2.1e-16 89.7 267 29.6
Migut.F01827 Erythranthe guttata HOM05D004723 ORTHO05D006176 2.1e-16 89.7 106 45.3
SMO239G0207 Selaginella moellendorffii HOM05D004723 ORTHO05D006176 2.1e-16 89.7 76 57.9
SEGI_08029 Sequoiadendron giganteum HOM05D004723 ORTHO05D006176 2.7e-16 89.4 128 39.8
PGSC0003DMG400003588 Solanum tuberosum HOM05D004723 ORTHO05D006176 2.7e-16 89.4 106 49.1
vmacro18436 Vaccinium macrocarpon HOM05D004723 ORTHO05D006176 2.7e-16 89.4 106 47.2
PSO541G1155 Papaver somniferum HOM05D004723 ORTHO05D006176 3.6e-16 89.0 106 47.2
Solyc02g083470.3 Solanum lycopersicum HOM05D004723 ORTHO05D006176 4.7e-16 88.6 78 57.7
CARHR075890 Cardamine hirsuta HOM05D004723 ORTHO05D006176 6.1e-16 88.2 58 69.0
PSO675G8954 Papaver somniferum HOM05D004723 ORTHO05D006176 8.0e-16 87.8 106 48.1
Peaxi162Scf00198g00136 Petunia axillaris HOM05D004723 ORTHO05D006176 1.0e-15 87.4 107 48.6
SMO232G0062 Selaginella moellendorffii HOM05D004723 ORTHO05D006176 1.0e-15 87.4 76 56.6
CSS0012813 Camellia sinensis var. sinensis HOM05D004723 ORTHO05D006176 3.0e-15 85.9 106 47.2
CAN.G890.41 Capsicum annuum HOM05D004723 ORTHO05D006176 3.9e-15 85.5 105 45.7
Sopen02g028260 Solanum pennellii HOM05D004723 ORTHO05D006176 3.9e-15 85.5 108 47.2
Nitab4.5_0001789g0050 Nicotiana tabacum HOM05D004723 ORTHO05D006176 8.8e-15 84.3 105 44.8
HPP92_019125 Vanilla planifolia HOM05D004723 ORTHO05D006176 8.8e-15 84.3 106 41.5
DCAR_024713 Daucus carota HOM05D004723 ORTHO05D006176 1.1e-14 84.0 102 48.0
Os07g0531700 Oryza sativa ssp. japonica HOM05D004723 ORTHO05D006176 1.5e-14 83.6 65 55.4
CBR_g41392 Chara braunii HOM05D004723 ORTHO05D006176 4.4e-14 82.0 65 55.4
Medtr3g107350 Medicago truncatula HOM05D004723 ORTHO05D006176 7.4e-14 81.3 47 80.9
unitig_22.g6210 Utricularia gibba HOM05D004119 ORTHO05D004797 1.8e-12 76.6 101 42.6
Zm00001eb323180 Zea mays HOM05D004723 ORTHO05D006176 1.8e-12 76.6 80 46.2
AagrBONN_evm.TU.Sc2ySwM_117.2822 Anthoceros agrestis HOM05D004723 ORTHO05D006176 4.1e-12 75.5 97 42.3
AagrBONN_evm.TU.Sc2ySwM_368.2747 Anthoceros agrestis HOM05D004723 ORTHO05D006176 2.0e-11 73.2 93 40.9
SHI00027 Sapria himalayana HOM05D004723 ORTHO05D006176 2.0e-11 73.2 75 52.0
Mapoly0061s0018 Marchantia polymorpha HOM05D004723 ORTHO05D006176 3.5e-11 72.4 80 41.2
Cre10.g452500 Chlamydomonas reinhardtii HOM05D004723 ORTHO05D006176 4.5e-11 72.0 61 50.8
Pp3c17_7210 Physcomitrium patens HOM05D004723 ORTHO05D006176 1.5e-09 67.0 57 45.6
TAR628G1016 Trochodendron aralioides HOM05D004723 ORTHO05D005421 1.5e-09 67.0 78 48.7
C03p39900 Brassica napus HOM05D004723 ORTHO05D006176 4.2e-09 65.5 59 54.2
SGA_v2.0_scaffold111G31425 Striga asiatica HOM05D004723 ORTHO05D006176 7.2e-09 64.7 155 31.0
MCO13G085 Micromonas commoda HOM05D004723 ORTHO05D006176 9.4e-09 64.3 86 39.5
PRCOL_00004947 Prasinoderma coloniale HOM05D004723 ORTHO05D006176 3.6e-08 62.4 58 46.6
Gohir.1Z049627 Gossypium hirsutum HOM05D004723 ORTHO05D006176 2.3e-07 59.7 78 43.6
Thecc.01G155000 Theobroma cacao HOM05D004723 ORTHO05D006176 3.3e-06 55.8 98 34.7


User provided reference genes

Program Settings