Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G32980 Trifolium pratense HOM05D005184 ORTHO05D006222 6.1e-97 357.5 178 100.0
Medtr8g063230 Medicago truncatula HOM05D005184 ORTHO05D006222 5.8e-87 324.3 183 89.1
Ca_22770_v3 Cicer arietinum L. HOM05D005184 ORTHO05D006222 2.1e-81 305.8 170 88.8
Glyma.18G133800 Glycine max HOM05D005184 ORTHO05D006222 2.3e-75 285.8 171 83.0
Psat4g125480 Pisum sativum HOM05D005184 ORTHO05D006222 3.0e-75 285.4 177 83.1
Phvul.003G054400 Phaseolus vulgaris HOM05D005184 ORTHO05D006222 5.1e-75 284.6 175 80.6
Glyma.08G290400 Glycine max HOM05D005184 ORTHO05D006222 6.6e-75 284.3 171 82.5
VMungo0251G1371 Vigna mungo HOM05D005184 ORTHO05D006222 8.6e-75 283.9 171 81.9
Lalb_Chr11g0071121 Lupinus albus HOM05D005184 ORTHO05D006222 1.1e-74 283.5 170 83.5
Lj4g0016473 Lotus japonicus HOM05D005184 ORTHO05D006222 8.1e-73 277.3 168 81.0
arahy.Tifrunner.gnm1.ann1.GIV1JF Arachis hypogaea HOM05D005184 ORTHO05D006222 8.9e-72 273.9 176 79.5
Potri.008G146200 Populus trichocarpa HOM05D005184 ORTHO05D006222 2.6e-71 272.3 175 75.4
Manes.01G197300 Manihot esculenta HOM05D005184 ORTHO05D006222 9.9e-71 270.4 170 77.6
PGR119G0379 Punica granatum HOM05D005184 ORTHO05D006222 2.2e-70 269.2 168 79.2
CiPaw.05G149300 Carya illinoinensis HOM05D005184 ORTHO05D006222 3.8e-70 268.5 170 78.8
Ciclev10032867m.g Citrus clementina HOM05D005184 ORTHO05D006222 6.4e-70 267.7 170 78.8
Atru.chr11.1971 Acer truncatum HOM05D005184 ORTHO05D006222 3.2e-69 265.4 170 77.1
Cfa009129 Carpinus fangiana HOM05D005184 ORTHO05D006222 4.1e-69 265.0 170 78.2
COL.COLO4_19542 Corchorus olitorius HOM05D005184 ORTHO05D006222 4.1e-69 265.0 169 77.5
TAR374G1061 Trochodendron aralioides HOM05D005184 ORTHO05D006222 4.1e-69 265.0 176 73.9
Thecc.02G243600 Theobroma cacao HOM05D005184 ORTHO05D006222 2.7e-68 262.3 169 76.3
Nn4g22873 Nelumbo nucifera HOM05D005184 ORTHO05D006222 3.5e-68 261.9 176 73.9
CsaV3_5G031800 Cucumis sativus L. HOM05D005184 ORTHO05D006222 1.0e-67 260.4 170 77.1
FvH4_4g34930 Fragaria vesca HOM05D005184 ORTHO05D006222 1.3e-67 260.0 168 75.6
CANSAT01G1514 Cannabis sativa HOM05D005184 ORTHO05D006222 3.9e-67 258.5 175 73.7
Duzib268G0446 Durio zibethinus HOM05D005184 ORTHO05D006222 3.9e-67 258.5 170 74.1
Potri.010G095601 Populus trichocarpa HOM05D005184 ORTHO05D006222 6.6e-67 257.7 170 74.7
TWI18G1303 Tripterygium wilfordii HOM05D005184 ORTHO05D006222 8.6e-67 257.3 165 76.4
Actinidia27771 Actinidia chinensis HOM05D005184 ORTHO05D006222 1.9e-66 256.1 171 75.4
Gohir.D01G129700 Gossypium hirsutum HOM05D005184 ORTHO05D006222 1.9e-66 256.1 169 74.6
Gohir.A01G139200 Gossypium hirsutum HOM05D005184 ORTHO05D006222 7.3e-66 254.2 169 74.0
Cpa.g.sc5.359 Carica papaya HOM05D005184 ORTHO05D006222 9.6e-66 253.8 174 73.0
HanXRQChr04g0103681 Helianthus annuus HOM05D005184 ORTHO05D006222 9.6e-66 253.8 171 73.7
PSO478G1620 Papaver somniferum HOM05D005184 ORTHO05D006222 2.8e-65 252.3 176 71.0
Aqoxy3G03072 Aquilegia oxysepala HOM05D005184 ORTHO05D006222 3.6e-65 251.9 175 70.9
MSTRG.614 Avicennia marina HOM05D005184 ORTHO05D006222 6.2e-65 251.1 172 74.4
Lsat_1_v5_gn_4_6340 Lactuca sativa HOM05D005184 ORTHO05D006222 6.2e-65 251.1 171 73.1
Migut.E00145 Erythranthe guttata HOM05D005184 ORTHO05D006222 8.1e-65 250.8 172 72.1
Sabra10G0068200 Salix brachista HOM05D005184 ORTHO05D006222 8.1e-65 250.8 174 71.8
MELO3C012019.2 Cucumis melo HOM05D005184 ORTHO05D006222 1.4e-64 250.0 159 78.0
Medtr8g461280 Medicago truncatula HOM05D005184 ORTHO05D006222 1.4e-64 250.0 165 75.8
arahy.Tifrunner.gnm1.ann1.G4BVC6 Arachis hypogaea HOM05D005184 ORTHO05D006222 5.2e-64 248.1 235 59.6
ECA234G0428 Erigeron canadensis HOM05D005184 ORTHO05D003386 9.0e-64 247.3 169 72.2
Cc11_g14330 Coffea canephora HOM05D005184 ORTHO05D006222 1.2e-63 246.9 180 69.4
PSO017G3562 Papaver somniferum HOM05D005184 ORTHO05D006222 2.0e-63 246.1 166 72.3
RcHm_v2.0_Chr5g0030111 Rosa chinensis HOM05D005184 ORTHO05D006222 2.6e-63 245.7 173 70.5
ClCG05G025100 Citrullus lanatus HOM05D005184 ORTHO05D006222 1.7e-62 243.0 159 76.7
MD16G1088100 Malus domestica HOM05D005184 ORTHO05D006222 6.4e-62 241.1 176 69.3
Eucgr.B02549 Eucalyptus grandis HOM05D005184 ORTHO05D006222 8.4e-62 240.7 168 70.2
Oeu039485.1 Olea europaea HOM05D005184 ORTHO05D006222 8.4e-62 240.7 173 70.5
Oeu040755.2 Olea europaea HOM05D005184 ORTHO05D006222 8.4e-62 240.7 173 68.8
Gorai.002G161300 Gossypium raimondii HOM05D005184 ORTHO05D006222 4.2e-61 238.4 204 61.8
Rhsim12G0048500 Rhododendron simsii HOM05D005184 ORTHO05D006222 5.4e-61 238.0 188 67.6
MD13G1087800 Malus domestica HOM05D005184 ORTHO05D006222 9.3e-61 237.3 186 64.5
CSS0049337 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 4.6e-60 235.0 174 68.4
CDE04G2481 Ceratophyllum demersum HOM05D006272 ORTHO05D006222 3.9e-59 231.9 187 65.2
Sc04g0008930 Simmondsia chinensis HOM05D005184 ORTHO05D006222 5.1e-59 231.5 170 69.4
Mapoly0065s0085 Marchantia polymorpha HOM05D005184 ORTHO05D006222 6.6e-59 231.1 170 66.5
Haze_12160 Corylus avellana HOM05D005184 ORTHO05D006222 1.9e-58 229.6 170 70.6
FAN12G2936 Fragaria x ananassa HOM05D005184 ORTHO05D006222 1.9e-58 229.6 168 69.6
FAN17G0007 Fragaria x ananassa HOM05D005184 ORTHO05D006222 9.6e-58 227.3 168 69.0
FAN22G1244 Fragaria x ananassa HOM05D005184 ORTHO05D006222 9.6e-58 227.3 168 69.0
CSS0034024 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 2.1e-57 226.1 173 66.5
FAN07G0314 Fragaria x ananassa HOM05D005184 ORTHO05D006222 3.6e-57 225.3 168 67.9
Os02g0741900 Oryza sativa ssp. japonica HOM05D005184 ORTHO05D006222 3.6e-57 225.3 172 64.5
Zm00001eb254250 Zea mays HOM05D005184 ORTHO05D006222 8.1e-57 224.2 173 64.2
TAR622G1169 Trochodendron aralioides HOM05D005184 ORTHO05D006222 4.0e-56 221.9 166 69.3
Zm00001eb194690 Zea mays HOM05D005184 ORTHO05D006222 5.3e-56 221.5 172 63.4
CSS0033197 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 3.4e-55 218.8 178 64.0
CSS0002866 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 6.4e-54 214.5 167 65.9
GSVIVG01020163001 Vitis vinifera HOM05D005184 ORTHO05D006222 6.4e-54 214.5 133 80.5
DCAR_007099 Daucus carota HOM05D005184 ORTHO05D006222 2.4e-53 212.6 187 64.7
HPP92_015265 Vanilla planifolia HOM05D000076 ORTHO05D002949 3.5e-52 208.8 170 63.5
CSS0009826 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 4.6e-52 208.4 165 64.8
CDE06G1803 Ceratophyllum demersum HOM05D005184 ORTHO05D006222 1.8e-51 206.5 166 66.3
SGA_v2.0_scaffold166G38348 Striga asiatica HOM05D005184 ORTHO05D006222 2.3e-51 206.1 137 75.9
CBR_g30806 Chara braunii HOM05D005184 ORTHO05D006222 1.1e-50 203.8 169 59.2
CBR_g30798 Chara braunii HOM05D005184 ORTHO05D006222 2.5e-50 202.6 169 59.2
Carub.0001s2347 Capsella rubella HOM05D005184 ORTHO05D006222 3.3e-50 202.2 170 58.2
unitig_749.g13268 Utricularia gibba HOM05D005184 ORTHO05D006222 3.3e-50 202.2 187 57.2
Pp3c1_7410 Physcomitrium patens HOM05D005184 ORTHO05D006222 7.4e-50 201.1 169 60.4
AUR62005318 Chenopodium quinoa HOM05D005184 ORTHO05D006222 1.6e-49 199.9 135 74.8
Aa31LG7G7840 Aethionema arabicum HOM05D005184 ORTHO05D006222 3.7e-49 198.7 170 58.2
THA.LOC104822060 Tarenaya hassleriana HOM05D005184 ORTHO05D006222 3.7e-49 198.7 169 57.4
Lj3A1049G57 Lonicera japonica HOM05D005184 ORTHO05D006222 4.8e-49 198.4 132 75.8
RcHm_v2.0_Chr3g0467191 Rosa chinensis HOM05D005184 ORTHO05D006222 1.1e-48 197.2 162 61.7
THA.LOC104808902 Tarenaya hassleriana HOM05D005184 ORTHO05D006222 1.4e-48 196.8 169 56.8
AT1G24050 Arabidopsis thaliana HOM05D005184 ORTHO05D006222 6.9e-48 194.5 170 57.1
AL1G37810 Arabidopsis lyrata HOM05D005184 ORTHO05D006222 9.0e-48 194.1 170 56.5
Sp1g21380 Schrenkiella parvula HOM05D005184 ORTHO05D006222 1.5e-47 193.4 170 56.5
RcHm_v2.0_Chr1g0347741 Rosa chinensis HOM05D005184 ORTHO05D006222 2.6e-47 192.6 138 67.4
BcaC05g26302 Brassica carinata HOM05D005184 ORTHO05D006222 2.9e-46 189.1 173 54.9
ATR1149G050 Amborella trichopoda HOM05D005184 ORTHO05D006222 6.4e-46 188.0 131 71.0
AagrBONN_evm.TU.Sc2ySwM_344.3206 Anthoceros agrestis HOM05D005184 ORTHO05D006222 1.4e-45 186.8 157 57.3
Thhalv10009785m.g Eutrema salsugineum HOM05D005184 ORTHO05D006222 2.4e-45 186.0 168 55.4
BolC5t31020H Brassica oleracea HOM05D005184 ORTHO05D006222 7.1e-45 184.5 174 54.6
BcaB07g32379 Brassica carinata HOM05D005184 ORTHO05D006222 2.1e-44 183.0 168 54.2
BraA07t29118Z Brassica rapa HOM05D005184 ORTHO05D006222 1.0e-43 180.6 168 53.0
C07p20080 Brassica napus HOM05D005184 ORTHO05D006222 1.8e-43 179.9 168 52.4
BolC7t42528H Brassica oleracea HOM05D005184 ORTHO05D006222 1.8e-43 179.9 168 52.4
BraA09t39575Z Brassica rapa HOM05D005184 ORTHO05D006222 2.3e-43 179.5 174 53.4
SMO117G0191 Selaginella moellendorffii HOM05D005184 ORTHO05D006222 2.3e-43 179.5 170 55.9
Phvul.003G054101 Phaseolus vulgaris HOM05D005184 ORTHO05D006222 3.0e-43 179.1 118 76.3
Nitab4.5_0000031g0060 Nicotiana tabacum HOM05D005184 ORTHO05D006222 3.9e-43 178.7 195 54.4
RcHm_v2.0_Chr2g0143691 Rosa chinensis HOM05D005184 ORTHO05D006222 1.1e-42 177.2 138 64.5
Sed0020204 Sechium edule HOM05D005184 ORTHO05D006222 1.3e-41 173.7 121 71.9
C05p23190 Brassica napus HOM05D001690 ORTHO05D009096 1.6e-41 173.3 165 54.5
Hund05960 Selenicereus undatus HOM05D005184 ORTHO05D006222 2.8e-41 172.6 120 72.5
RcHm_v2.0_Chr7g0224821 Rosa chinensis HOM05D005184 ORTHO05D006222 1.8e-40 169.9 117 69.2
A09p40800 Brassica napus HOM05D001690 ORTHO05D009096 2.4e-40 169.5 165 53.3
RcHm_v2.0_Chr4g0444381 Rosa chinensis HOM05D005184 ORTHO05D006222 5.3e-40 168.3 108 77.8
Duzib248G0500 Durio zibethinus HOM05D005184 ORTHO05D006222 2.2e-38 162.9 135 63.7
BcaB03g14122 Brassica carinata HOM05D005184 ORTHO05D006222 6.7e-35 151.4 119 61.3
Prupe.1G258500 Prunus persica HOM05D005184 ORTHO05D006222 8.7e-35 151.0 124 62.1
Pp3c7_23840 Physcomitrium patens HOM05D005184 ORTHO05D006222 5.7e-34 148.3 133 58.6
AL2G29520 Arabidopsis lyrata HOM05D005184 ORTHO05D006222 7.4e-34 147.9 169 45.6
Sp5g25350 Schrenkiella parvula HOM05D005184 ORTHO05D006222 1.3e-33 147.1 179 42.5
Thhalv10019170m.g Eutrema salsugineum HOM05D005184 ORTHO05D006222 2.8e-33 146.0 187 44.4
Carub.0002s1692 Capsella rubella HOM05D005184 ORTHO05D006222 8.2e-33 144.4 170 46.5
BcaC03g15168 Brassica carinata HOM05D005184 ORTHO05D006222 1.8e-32 143.3 178 46.1
CSS0000441 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 4.1e-32 142.1 117 63.2
BolC2t08801H Brassica oleracea HOM05D005184 ORTHO05D006222 1.5e-31 140.2 178 45.5
BraA02t06699Z Brassica rapa HOM05D005184 ORTHO05D006222 1.5e-31 140.2 173 43.9
C02p27410 Brassica napus HOM05D005184 ORTHO05D006222 3.4e-31 139.0 178 44.9
CARHR024350 Cardamine hirsuta HOM05D005184 ORTHO05D006222 4.5e-31 138.7 137 52.6
A02p16400 Brassica napus HOM05D005184 ORTHO05D006222 2.9e-30 136.0 191 40.8
CARHR063340 Cardamine hirsuta HOM05D005184 ORTHO05D006222 2.9e-30 136.0 170 44.1
AT1G70220 Arabidopsis thaliana HOM05D005184 ORTHO05D006222 1.4e-29 133.7 169 41.4
EL10Ac6g13619 Beta vulgaris HOM05D005184 ORTHO05D006222 1.9e-29 133.3 156 50.0
BcaC06g35075 Brassica carinata HOM05D005184 ORTHO05D006222 3.6e-28 129.0 138 50.7
Cc02_g24860 Coffea canephora HOM05D005184 ORTHO05D006222 3.0e-27 125.9 158 48.1
vmacro22616 Vaccinium macrocarpon HOM05D005184 ORTHO05D006222 6.9e-24 114.8 78 74.4
BcaB05g24540 Brassica carinata HOM05D005184 ORTHO05D006222 1.3e-22 110.5 130 47.7
Cre10.g421850 Chlamydomonas reinhardtii HOM05D005184 ORTHO05D006222 1.3e-22 110.5 167 37.1
A07p13470 Brassica napus HOM05D005184 ORTHO05D006222 1.1e-21 107.5 159 37.1
MCO16G256 Micromonas commoda HOM05D005184 ORTHO05D006222 2.7e-20 102.8 171 37.4
Cc00_g31660 Coffea canephora HOM05D005184 ORTHO05D006222 4.7e-20 102.1 126 48.4
BcaB02g09680 Brassica carinata HOM05D000630 ORTHO05D014858 3.1e-16 89.4 77 57.1
Solyc04g025670.4 Solanum lycopersicum HOM05D005184 ORTHO05D006222 3.1e-16 89.4 53 81.1
QL03p062286 Quercus lobata HOM05D005184 ORTHO05D006222 4.1e-16 89.0 56 78.6
Nitab4.5_0000925g0110 Nicotiana tabacum HOM05D005184 ORTHO05D006222 9.1e-16 87.8 53 81.1
Prupe.1G258600 Prunus persica HOM05D005184 ORTHO05D006222 9.1e-16 87.8 52 82.7
vmacro22617 Vaccinium macrocarpon HOM05D005184 ORTHO05D006222 9.1e-16 87.8 52 80.8
Cc00_g05590 Coffea canephora HOM05D005184 ORTHO05D006222 4.2e-13 79.0 78 51.3
CSS0046251 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 7.2e-13 78.2 52 73.1
PRCOL_00005775 Prasinoderma coloniale HOM05D005184 ORTHO05D006222 7.2e-13 78.2 87 48.3
Peaxi162Scf00792g00021 Petunia axillaris HOM05D005184 ORTHO05D006222 3.6e-12 75.9 41 87.8
Cc00_g11840 Coffea canephora HOM05D001087 ORTHO05D006222 1.1e-10 70.9 66 53.0
BolC5t28869H Brassica oleracea HOM05D000630 ORTHO05D014858 6.3e-09 65.1 64 48.4
RcHm_v2.0_Chr4g0444371 Rosa chinensis HOM05D005184 ORTHO05D006222 1.0e-06 57.8 35 68.6


User provided reference genes

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