Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G32973 Trifolium pratense HOM05D005297 ORTHO05D006545 2.4e-40 168.3 82 100.0
VMungo1080G0855 Vigna mungo HOM05D005392 ORTHO05D006709 4.6e-23 110.9 70 74.3
Medtr0227s0030 Medicago truncatula HOM05D005297 ORTHO05D006545 1.9e-21 105.5 62 83.9
FvH4_3g29610 Fragaria vesca HOM05D005297 ORTHO05D006545 9.6e-21 103.2 55 89.1
FAN11G1678 Fragaria x ananassa HOM05D005297 ORTHO05D006545 9.6e-21 103.2 55 89.1
FAN16G3468 Fragaria x ananassa HOM05D005297 ORTHO05D006545 1.1e-19 99.8 52 90.4
FAN21G1663 Fragaria x ananassa HOM05D005297 ORTHO05D006545 1.1e-19 99.8 52 90.4
Prupe.6G124400 Prunus persica HOM05D005297 ORTHO05D006545 1.1e-19 99.8 52 88.5
Ca_09074_v3 Cicer arietinum L. HOM05D005297 ORTHO05D006545 2.4e-19 98.6 52 90.4
Lalb_Chr24g0395231 Lupinus albus HOM05D005297 ORTHO05D006545 2.4e-19 98.6 52 88.5
Sed0022012 Sechium edule HOM05D005297 ORTHO05D006545 2.4e-19 98.6 52 90.4
AT4G04190 Arabidopsis thaliana HOM05D005297 ORTHO05D006545 3.1e-19 98.2 52 88.5
Manes.11G159700 Manihot esculenta HOM05D005297 ORTHO05D006545 3.1e-19 98.2 52 90.4
Manes.14G159600 Manihot esculenta HOM05D005297 ORTHO05D006545 3.1e-19 98.2 52 90.4
Haze_23424 Corylus avellana HOM05D005297 ORTHO05D006545 4.0e-19 97.8 52 88.5
Dinv29444 Davidia involucrata HOM05D005297 ORTHO05D006545 4.0e-19 97.8 52 88.5
MD11G1160800 Malus domestica HOM05D005297 ORTHO05D006545 4.0e-19 97.8 52 84.6
Phvul.005G125900 Phaseolus vulgaris HOM05D005297 ORTHO05D006545 4.0e-19 97.8 52 86.5
Psat2g130440 Pisum sativum HOM05D005297 ORTHO05D006545 4.0e-19 97.8 52 90.4
PGR119G1280 Punica granatum HOM05D005297 ORTHO05D006545 4.0e-19 97.8 52 88.5
QL02p014091 Quercus lobata HOM05D005297 ORTHO05D006545 4.0e-19 97.8 52 88.5
TAR623G0730 Trochodendron aralioides HOM05D005297 ORTHO05D006545 4.0e-19 97.8 52 88.5
Glyma.12G183000 Glycine max HOM05D005297 ORTHO05D006545 5.3e-19 97.4 52 86.5
Glyma.13G318100 Glycine max HOM05D005297 ORTHO05D006545 5.3e-19 97.4 52 86.5
Lj2g0006626 Lotus japonicus HOM05D005297 ORTHO05D006545 5.3e-19 97.4 52 86.5
RcHm_v2.0_Chr5g0054661 Rosa chinensis HOM05D005297 ORTHO05D006545 5.3e-19 97.4 52 88.5
RcHm_v2.0_Chr5g0054901 Rosa chinensis HOM05D005297 ORTHO05D006545 5.3e-19 97.4 52 88.5
HPP92_006421 Vanilla planifolia HOM05D005297 ORTHO05D006545 5.3e-19 97.4 54 87.0
MELO3C003122.2 Cucumis melo HOM05D005297 ORTHO05D006545 6.9e-19 97.1 52 88.5
CsaV3_4G024870 Cucumis sativus L. HOM05D005297 ORTHO05D006545 6.9e-19 97.1 52 88.5
THA.LOC104799541 Tarenaya hassleriana HOM05D005297 ORTHO05D006545 6.9e-19 97.1 52 88.5
AL6G47810 Arabidopsis lyrata HOM05D005297 ORTHO05D006545 9.0e-19 96.7 52 86.5
CiPaw.13G138500 Carya illinoinensis HOM05D005297 ORTHO05D006545 9.0e-19 96.7 52 86.5
Nn2g14072 Nelumbo nucifera HOM05D005297 ORTHO05D006545 9.0e-19 96.7 52 86.5
arahy.Tifrunner.gnm1.ann1.Q11QUE Arachis hypogaea HOM05D005297 ORTHO05D006545 1.2e-18 96.3 55 83.6
Potri.009G146100 Populus trichocarpa HOM05D005297 ORTHO05D006545 1.2e-18 96.3 52 86.5
TAR369G0691 Trochodendron aralioides HOM05D005297 ORTHO05D006545 1.2e-18 96.3 52 86.5
Atru.chr3.3335 Acer truncatum HOM05D005297 ORTHO05D006545 1.5e-18 95.9 52 86.5
Duzib150G0109 Durio zibethinus HOM05D005297 ORTHO05D006545 1.5e-18 95.9 52 86.5
Sp7g17550 Schrenkiella parvula HOM05D005297 ORTHO05D006545 1.5e-18 95.9 52 86.5
CSS0010276 Camellia sinensis var. sinensis HOM05D005297 ORTHO05D006545 2.0e-18 95.5 52 86.5
CSS0048581 Camellia sinensis var. sinensis HOM05D005297 ORTHO05D006545 2.0e-18 95.5 52 86.5
unitig_736.g22397 Utricularia gibba HOM05D005297 ORTHO05D006545 2.0e-18 95.5 52 88.5
CANSAT64G2769 Cannabis sativa HOM05D005297 ORTHO05D006545 2.6e-18 95.1 52 84.6
Medtr4g088775 Medicago truncatula HOM05D005297 ORTHO05D006545 2.6e-18 95.1 52 88.5
Solyc11g067150.2 Solanum lycopersicum HOM05D005297 ORTHO05D006545 2.6e-18 95.1 52 86.5
Sopen11g026830 Solanum pennellii HOM05D005297 ORTHO05D006545 2.6e-18 95.1 52 86.5
PGSC0003DMG400007409 Solanum tuberosum HOM05D005297 ORTHO05D006545 2.6e-18 95.1 52 86.5
Ciclev10029400m.g Citrus clementina HOM05D005297 ORTHO05D006545 3.4e-18 94.7 52 86.5
Nitab4.5_0003532g0010 Nicotiana tabacum HOM05D005297 ORTHO05D006545 3.4e-18 94.7 52 86.5
PSO170G0247 Papaver somniferum HOM05D005297 ORTHO05D006545 3.4e-18 94.7 52 84.6
PSO801G0702 Papaver somniferum HOM05D005297 ORTHO05D006545 3.4e-18 94.7 52 84.6
BcaB01g01797 Brassica carinata HOM05D005297 ORTHO05D006545 4.5e-18 94.4 52 84.6
BcaC04g21280 Brassica carinata HOM05D005297 ORTHO05D006545 4.5e-18 94.4 52 84.6
Carub.0006s3210 Capsella rubella HOM05D005297 ORTHO05D006545 4.5e-18 94.4 52 84.6
ECA236G0310 Erigeron canadensis HOM05D005297 ORTHO05D006545 4.5e-18 94.4 52 84.6
Migut.N00940 Erythranthe guttata HOM05D005297 ORTHO05D006545 4.5e-18 94.4 52 84.6
Thhalv10029010m.g Eutrema salsugineum HOM05D005297 ORTHO05D006545 4.5e-18 94.4 52 84.6
Lsat_1_v5_gn_8_117180 Lactuca sativa HOM05D005297 ORTHO05D006545 4.5e-18 94.4 52 82.7
Sabra09G0113000 Salix brachista HOM05D005297 ORTHO05D006545 4.5e-18 94.4 52 82.7
Sabra09G0115400 Salix brachista HOM05D005297 ORTHO05D006545 4.5e-18 94.4 52 82.7
Sp6g04610 Schrenkiella parvula HOM05D005297 ORTHO05D006545 4.5e-18 94.4 52 84.6
Aa31LG6G1540 Aethionema arabicum HOM05D005297 ORTHO05D006545 5.8e-18 94.0 52 82.7
HanXRQChr13g0408991 Helianthus annuus HOM05D005297 ORTHO05D006545 5.8e-18 94.0 52 84.6
MSTRG.18743 Avicennia marina HOM05D005297 ORTHO05D006545 7.6e-18 93.6 52 84.6
Gorai.001G120900 Gossypium raimondii HOM05D005297 ORTHO05D006545 7.6e-18 93.6 52 84.6
Gorai.006G055300 Gossypium raimondii HOM05D005297 ORTHO05D006545 7.6e-18 93.6 52 84.6
Rhsim13G0107700 Rhododendron simsii HOM05D005297 ORTHO05D006545 7.6e-18 93.6 54 77.8
Rhsim13G0108000 Rhododendron simsii HOM05D005297 ORTHO05D006545 7.6e-18 93.6 52 82.7
Aqoxy4G02831 Aquilegia oxysepala HOM05D005297 ORTHO05D006545 1.0e-17 93.2 52 84.6
PSO384G0067 Papaver somniferum HOM05D005297 ORTHO05D006545 1.0e-17 93.2 52 82.7
PSO425G0036 Papaver somniferum HOM05D005297 ORTHO05D006545 1.0e-17 93.2 52 82.7
Rhsim05G0032500 Rhododendron simsii HOM05D005297 ORTHO05D006545 1.0e-17 93.2 52 84.6
vmacro03296 Vaccinium macrocarpon HOM05D005297 ORTHO05D006545 1.0e-17 93.2 52 82.7
Eucgr.J00466 Eucalyptus grandis HOM05D005297 ORTHO05D006545 1.3e-17 92.8 52 84.6
arahy.Tifrunner.gnm1.ann1.LDL4WN Arachis hypogaea HOM05D005297 ORTHO05D006545 1.7e-17 92.4 55 80.0
CARHR253330 Cardamine hirsuta HOM05D005297 ORTHO05D006545 1.7e-17 92.4 52 82.7
Gohir.D07G112500 Gossypium hirsutum HOM05D005297 ORTHO05D006545 1.7e-17 92.4 52 82.7
Hund18738 Selenicereus undatus HOM05D005297 ORTHO05D006545 1.7e-17 92.4 61 72.1
Duzib168G0206 Durio zibethinus HOM05D005297 ORTHO05D006545 2.2e-17 92.0 52 84.6
Gohir.A07G108700 Gossypium hirsutum HOM05D005297 ORTHO05D006545 2.2e-17 92.0 52 82.7
Gohir.A07G108780 Gossypium hirsutum HOM05D005297 ORTHO05D006545 2.2e-17 92.0 52 82.7
Gorai.003G055900 Gossypium raimondii HOM05D005297 ORTHO05D006545 2.2e-17 92.0 52 82.7
arahy.Tifrunner.gnm1.ann1.CT6H1M Arachis hypogaea HOM05D005297 ORTHO05D006545 2.9e-17 91.7 52 82.7
Sc15g0007560 Simmondsia chinensis HOM05D005297 ORTHO05D006545 2.9e-17 91.7 52 80.8
Sc21g0007210 Simmondsia chinensis HOM05D005297 ORTHO05D006545 2.9e-17 91.7 52 80.8
EL10Ac7g15793 Beta vulgaris HOM05D005297 ORTHO05D006545 3.8e-17 91.3 52 80.8
MBI17_g16878_MAGBIO Magnolia biondii HOM05D005297 ORTHO05D006545 4.9e-17 90.9 51 80.4
A09p26430 Brassica napus HOM05D005297 ORTHO05D006545 6.5e-17 90.5 50 84.0
C09p33610 Brassica napus HOM05D002056 ORTHO05D002289 6.5e-17 90.5 50 84.0
Gohir.D09G053026 Gossypium hirsutum HOM05D005297 ORTHO05D006545 6.5e-17 90.5 52 80.8
Thecc.09G287800 Theobroma cacao HOM05D005297 ORTHO05D006545 8.4e-17 90.1 52 82.7
CAN.G644.6 Capsicum annuum HOM05D005297 ORTHO05D006545 1.1e-16 89.7 52 82.7
AUR62009792 Chenopodium quinoa HOM05D005297 ORTHO05D006545 1.1e-16 89.7 52 80.8
PSO339G2689 Papaver somniferum HOM05D005297 ORTHO05D006545 1.1e-16 89.7 52 78.8
PSO339G0592 Papaver somniferum HOM05D005297 ORTHO05D006545 1.4e-16 89.4 52 80.8
SGA_v2.0_scaffold147G36360 Striga asiatica HOM05D005297 ORTHO05D006545 1.9e-16 89.0 50 82.0
Gorai.003G076100 Gossypium raimondii HOM05D005297 ORTHO05D006545 2.5e-16 88.6 51 82.4
CSS0004713 Camellia sinensis var. sinensis HOM05D005297 ORTHO05D006545 3.2e-16 88.2 50 82.0
CDE11G0319 Ceratophyllum demersum HOM05D005297 ORTHO05D006545 3.2e-16 88.2 52 80.8
Rhsim13G0108200 Rhododendron simsii HOM05D005297 ORTHO05D006545 3.2e-16 88.2 49 81.6
SalBow6G5239 Salvia bowleyana HOM05D005297 ORTHO05D006545 3.2e-16 88.2 53 79.2
Gohir.D06G133032 Gossypium hirsutum HOM05D005297 ORTHO05D006545 9.3e-16 86.7 49 81.6
Zm00001eb084080 Zea mays HOM05D005297 ORTHO05D006545 2.7e-15 85.1 52 76.9
arahy.Tifrunner.gnm1.ann1.K2P72U Arachis hypogaea HOM05D005780 ORTHO05D006545 4.6e-15 84.3 46 84.8
arahy.Tifrunner.gnm1.ann1.S3X3J8 Arachis hypogaea HOM05D005297 ORTHO05D006545 4.6e-15 84.3 46 84.8
CAN.G1177.8 Capsicum annuum HOM05D005297 ORTHO05D006545 1.8e-14 82.4 44 86.4
COL.COLO4_19936 Corchorus olitorius HOM05D005297 ORTHO05D006545 1.8e-14 82.4 44 86.4
Lj2A987T34 Lonicera japonica HOM05D005297 ORTHO05D006545 1.8e-14 82.4 44 86.4
PSO782G5408 Papaver somniferum HOM05D005297 ORTHO05D006545 1.8e-14 82.4 52 75.0
Peaxi162Scf00544g00918 Petunia axillaris HOM05D005297 ORTHO05D006545 1.8e-14 82.4 44 86.4
Cc01_g09520 Coffea canephora HOM05D005297 ORTHO05D006545 2.3e-14 82.0 44 86.4
Gorai.005G178100 Gossypium raimondii HOM05D005297 ORTHO05D006545 2.3e-14 82.0 52 73.1
Hma1.2p1_0305F.1_g119460 Hydrangea macrophylla HOM05D005297 ORTHO05D006545 2.3e-14 82.0 44 86.4
Nitab4.5_0021448g0010 Nicotiana tabacum HOM05D005297 ORTHO05D006545 2.3e-14 82.0 44 86.4
Os04g0410300 Oryza sativa ssp. japonica HOM05D005297 ORTHO05D006545 2.3e-14 82.0 52 73.1
SEGI_17822 Sequoiadendron giganteum HOM05D005297 ORTHO05D006545 2.3e-14 82.0 50 78.0
SHI11151 Sapria himalayana HOM05D005297 ORTHO05D000023 3.0e-14 81.6 46 78.3
BolC9t56195H Brassica oleracea HOM05D002056 ORTHO05D002289 5.1e-14 80.9 44 84.1
BraA09t38217Z Brassica rapa HOM05D005297 ORTHO05D006545 5.1e-14 80.9 44 84.1
TWI79G0927 Tripterygium wilfordii HOM05D005297 ORTHO05D006545 5.1e-14 80.9 52 73.1
ATR0820G241 Amborella trichopoda HOM05D005297 ORTHO05D006545 6.7e-14 80.5 44 84.1
Lsat_1_v5_gn_8_90380 Lactuca sativa HOM05D005297 ORTHO05D006545 6.7e-14 80.5 44 84.1
TWI79G0105 Tripterygium wilfordii HOM05D005297 ORTHO05D006545 6.7e-14 80.5 52 73.1
GSVIVG01036187001 Vitis vinifera HOM05D005297 ORTHO05D006545 6.7e-14 80.5 44 84.1
Thhalv10005498m.g Eutrema salsugineum HOM05D005297 ORTHO05D006545 1.1e-13 79.7 44 81.8
Cpa.g.sc32.130 Carica papaya HOM05D005297 ORTHO05D006545 1.5e-13 79.3 44 81.8
Nitab4.5_0024933g0010 Nicotiana tabacum HOM05D005297 ORTHO05D006545 2.5e-13 78.6 44 84.1
Medtr4g073910 Medicago truncatula HOM05D005297 ORTHO05D006545 1.3e-12 76.3 60 66.7
Os01g0191000 Oryza sativa ssp. japonica HOM05D005297 ORTHO05D006545 2.8e-12 75.1 50 72.0
RcHm_v2.0_Chr5g0054771 Rosa chinensis HOM05D005297 ORTHO05D006545 6.2e-12 73.9 37 91.9
Mapoly0068s0054 Marchantia polymorpha HOM05D005297 ORTHO05D006545 8.2e-12 73.6 51 62.7
AUR62039239 Chenopodium quinoa HOM05D005297 ORTHO05D006545 3.1e-11 71.6 42 76.2
Pp3c27_2700 Physcomitrium patens HOM05D005297 ORTHO05D006545 4.5e-10 67.8 42 66.7
Gohir.D02G158550 Gossypium hirsutum HOM05D005297 ORTHO05D006545 8.4e-09 63.5 43 67.4
Oeu050204.1 Olea europaea HOM05D005297 ORTHO05D006545 8.4e-09 63.5 34 85.3
PSO541G0924 Papaver somniferum HOM05D005117 ORTHO05D005956 2.7e-07 58.5 33 78.8
CBR_g82609 Chara braunii HOM05D005297 ORTHO05D006545 7.9e-07 57.0 42 57.1


User provided reference genes

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