Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G32964 Trifolium pratense HOM05D002637 ORTHO05D008095 2.5e-43 178.3 87 100.0
TPR.G28606 Trifolium pratense HOM05D002637 ORTHO05D008095 5.8e-40 167.2 87 94.3
Psat0s4320g0040 Pisum sativum HOM05D002637 ORTHO05D008095 2.7e-37 158.3 87 86.2
Medtr7g407140 Medicago truncatula HOM05D002637 ORTHO05D008095 7.3e-35 150.2 87 87.4
Lj1g0002851 Lotus japonicus HOM05D002637 ORTHO05D008095 9.5e-35 149.8 87 85.1
Phvul.011G190700 Phaseolus vulgaris HOM05D002637 ORTHO05D008095 2.1e-34 148.7 87 82.8
Glyma.13G187300 Glycine max HOM05D002637 ORTHO05D008095 1.1e-33 146.4 87 82.8
Lalb_Chr03g0040331 Lupinus albus HOM05D002637 ORTHO05D008095 4.0e-33 144.4 87 80.5
arahy.Tifrunner.gnm1.ann1.XZZ81X Arachis hypogaea HOM05D002637 ORTHO05D008095 5.2e-33 144.1 87 81.6
VMungo1127G0026 Vigna mungo HOM05D002637 ORTHO05D008095 6.8e-33 143.7 87 79.3
arahy.Tifrunner.gnm1.ann1.FQ7S35 Arachis hypogaea HOM05D002637 ORTHO05D008095 1.5e-32 142.5 87 79.3
Nitab4.5_0003696g0060 Nicotiana tabacum HOM05D002637 ORTHO05D008095 5.4e-30 134.0 86 69.8
QL04p030554 Quercus lobata HOM05D002637 ORTHO05D008095 9.2e-30 133.3 87 72.4
Nitab4.5_0003553g0010 Nicotiana tabacum HOM05D002637 ORTHO05D008095 6.0e-29 130.6 86 68.6
Ciclev10021077m.g Citrus clementina HOM05D002637 ORTHO05D008095 7.8e-29 130.2 90 67.8
Peaxi162Scf00030g00416 Petunia axillaris HOM05D002637 ORTHO05D008095 7.8e-29 130.2 86 68.6
Dinv43626 Davidia involucrata HOM05D002637 ORTHO05D008095 1.3e-28 129.4 87 71.3
Atru.chr5.146 Acer truncatum HOM05D002637 ORTHO05D008095 1.7e-28 129.0 87 69.0
Haze_02837 Corylus avellana HOM05D002637 ORTHO05D008095 3.9e-28 127.9 87 70.1
Cc02_g25040 Coffea canephora HOM05D002637 ORTHO05D008095 6.6e-28 127.1 87 67.8
Carub.0004s2744 Capsella rubella HOM05D002637 ORTHO05D008095 8.6e-28 126.7 88 69.3
Sed0022781 Sechium edule HOM05D002637 ORTHO05D008095 1.1e-27 126.3 87 69.0
CSS0015236 Camellia sinensis var. sinensis HOM05D002637 ORTHO05D008095 1.5e-27 125.9 87 67.8
CSS0036120 Camellia sinensis var. sinensis HOM05D002637 ORTHO05D008095 1.5e-27 125.9 87 67.8
Cfa011079 Carpinus fangiana HOM05D002637 ORTHO05D008095 3.3e-27 124.8 87 69.0
ClCG05G000440 Citrullus lanatus HOM05D002637 ORTHO05D008095 3.3e-27 124.8 87 67.8
CsaV3_3G007610 Cucumis sativus L. HOM05D002637 ORTHO05D008095 5.6e-27 124.0 87 65.5
Duzib133G1175 Durio zibethinus HOM05D002637 ORTHO05D008095 7.3e-27 123.6 87 65.5
Solyc01g090380.3 Solanum lycopersicum HOM05D002637 ORTHO05D008095 7.3e-27 123.6 86 67.4
Sopen01g036170 Solanum pennellii HOM05D002637 ORTHO05D008095 7.3e-27 123.6 86 67.4
MELO3C005982.2 Cucumis melo HOM05D002637 ORTHO05D008095 1.2e-26 122.9 87 66.7
PGSC0003DMG402026045 Solanum tuberosum HOM05D002637 ORTHO05D008095 1.6e-26 122.5 86 66.3
Thecc.01G393500 Theobroma cacao HOM05D002637 ORTHO05D008095 1.6e-26 122.5 87 66.7
Nn1g00861 Nelumbo nucifera HOM05D002637 ORTHO05D008095 2.8e-26 121.7 87 64.4
SGA_v2.0_scaffold153G36910 Striga asiatica HOM05D002637 ORTHO05D008095 3.6e-26 121.3 87 64.4
TWI59G1212 Tripterygium wilfordii HOM05D002637 ORTHO05D008095 6.2e-26 120.6 87 66.7
Lj7A545T102 Lonicera japonica HOM05D002637 ORTHO05D008095 8.1e-26 120.2 87 64.4
Cpa.g.sc166.42 Carica papaya HOM05D002637 ORTHO05D008095 2.3e-25 118.6 87 64.4
Hma1.2p1_0405F.1_g145580 Hydrangea macrophylla HOM05D002637 ORTHO05D008095 2.3e-25 118.6 87 64.4
Hma1.2p1_3157F.1_g333383 Hydrangea macrophylla HOM05D002637 ORTHO05D008095 2.3e-25 118.6 87 64.4
SHI13611 Sapria himalayana HOM05D002637 ORTHO05D008095 2.3e-25 118.6 87 65.5
Gohir.D08G068100 Gossypium hirsutum HOM05D002637 ORTHO05D008095 3.1e-25 118.2 87 60.9
Gorai.004G071300 Gossypium raimondii HOM05D002637 ORTHO05D008095 3.1e-25 118.2 87 60.9
Actinidia12150 Actinidia chinensis HOM05D002637 ORTHO05D008095 4.0e-25 117.9 87 62.1
MSTRG.20697 Avicennia marina HOM05D002637 ORTHO05D008095 4.0e-25 117.9 87 69.0
Thhalv10001543m.g Eutrema salsugineum HOM05D002637 ORTHO05D008095 4.0e-25 117.9 89 61.8
CANSAT64G0516 Cannabis sativa HOM05D002637 ORTHO05D008095 8.9e-25 116.7 87 63.2
Manes.01G272700 Manihot esculenta HOM05D002637 ORTHO05D008095 8.9e-25 116.7 87 63.2
Prupe.2G132600 Prunus persica HOM05D002637 ORTHO05D008095 8.9e-25 116.7 87 62.1
GSVIVG01018268001 Vitis vinifera HOM05D002637 ORTHO05D008095 8.9e-25 116.7 87 62.1
ECA240G0640 Erigeron canadensis HOM05D002637 ORTHO05D008095 1.5e-24 115.9 87 60.9
Oeu063231.1 Olea europaea HOM05D002637 ORTHO05D008095 1.5e-24 115.9 86 62.8
SalBow5G4529 Salvia bowleyana HOM05D002637 ORTHO05D008095 2.0e-24 115.5 86 62.8
Gohir.A08G058900 Gossypium hirsutum HOM05D002637 ORTHO05D008095 2.6e-24 115.2 87 59.8
AL4G43950 Arabidopsis lyrata HOM05D002637 ORTHO05D008095 3.4e-24 114.8 91 62.6
MD07G1104800 Malus domestica HOM05D002637 ORTHO05D008095 5.8e-24 114.0 87 63.2
RcHm_v2.0_Chr1g0347591 Rosa chinensis HOM05D002637 ORTHO05D008095 7.5e-24 113.6 87 63.2
Migut.B01542 Erythranthe guttata HOM05D002637 ORTHO05D008095 1.3e-23 112.8 87 64.4
Sc26g0001610 Simmondsia chinensis HOM05D002637 ORTHO05D008095 1.3e-23 112.8 87 60.9
THA.LOC104827587 Tarenaya hassleriana HOM05D002637 ORTHO05D008095 1.3e-23 112.8 87 58.6
CARHR140110 Cardamine hirsuta HOM05D002637 ORTHO05D008095 2.9e-23 111.7 91 60.4
TAR629G1915 Trochodendron aralioides HOM05D002637 ORTHO05D008095 2.9e-23 111.7 87 62.1
C04p71280 Brassica napus HOM05D002637 ORTHO05D008095 4.9e-23 110.9 87 59.8
BolC4t28632H Brassica oleracea HOM05D002637 ORTHO05D008095 4.9e-23 110.9 87 59.8
FvH4_7g09990 Fragaria vesca HOM05D002637 ORTHO05D008095 4.9e-23 110.9 87 62.1
PSO063G7293 Papaver somniferum HOM05D002637 ORTHO05D008095 6.4e-23 110.5 87 56.3
BcaC02g07119 Brassica carinata HOM05D002637 ORTHO05D008095 8.3e-23 110.2 87 60.9
A04p33520 Brassica napus HOM05D002637 ORTHO05D008095 1.1e-22 109.8 87 58.6
BraA04t18814Z Brassica rapa HOM05D002637 ORTHO05D008095 1.1e-22 109.8 87 58.6
EL10Ac1g00753 Beta vulgaris HOM05D002637 ORTHO05D008095 1.9e-22 109.0 87 60.9
FAN03G3044 Fragaria x ananassa HOM05D002637 ORTHO05D008095 1.9e-22 109.0 87 60.9
Lsat_1_v5_gn_3_131600 Lactuca sativa HOM05D002637 ORTHO05D008095 1.9e-22 109.0 87 57.5
Potri.002G137300 Populus trichocarpa HOM05D002637 ORTHO05D008095 1.9e-22 109.0 86 60.5
Aa31LG1G26400 Aethionema arabicum HOM05D002637 ORTHO05D008095 2.4e-22 108.6 102 54.9
Aqoxy3G02741 Aquilegia oxysepala HOM05D002637 ORTHO05D008095 3.2e-22 108.2 90 57.8
Sabra02G0106200 Salix brachista HOM05D001766 ORTHO05D001875 3.2e-22 108.2 86 60.5
BcaB06g29403 Brassica carinata HOM05D002637 ORTHO05D008095 5.4e-22 107.5 87 58.6
PGR004G1933 Punica granatum HOM05D002637 ORTHO05D008095 7.1e-22 107.1 87 58.6
CDE09G0379 Ceratophyllum demersum HOM05D002637 ORTHO05D008095 1.6e-21 105.9 87 59.8
CAN.G362.5 Capsicum annuum HOM05D002637 ORTHO05D008095 2.1e-21 105.5 86 57.0
Ah.05g177920 Amaranthus hybridus HOM05D002637 ORTHO05D008095 3.5e-21 104.8 87 58.6
unitig_8.g3841 Utricularia gibba HOM05D002637 ORTHO05D008095 3.5e-21 104.8 87 58.6
HanXRQChr13g0423181 Helianthus annuus HOM05D002637 ORTHO05D008095 6.0e-21 104.0 87 56.3
DCAR_015837 Daucus carota HOM05D002637 ORTHO05D008095 7.8e-21 103.6 87 59.8
PSO782G4032 Papaver somniferum HOM05D002637 ORTHO05D008095 7.8e-21 103.6 87 54.0
Sp4g26950 Schrenkiella parvula HOM05D002637 ORTHO05D008095 1.7e-20 102.4 91 56.0
FAN06G0182 Fragaria x ananassa HOM05D002637 ORTHO05D008095 3.0e-20 101.7 95 55.8
FAN06G4488 Fragaria x ananassa HOM05D002637 ORTHO05D008095 3.0e-20 101.7 95 55.8
SEGI_39924 Sequoiadendron giganteum HOM05D002637 ORTHO05D008095 3.0e-20 101.7 86 60.5
AUR62021542 Chenopodium quinoa HOM05D002637 ORTHO05D008095 3.9e-20 101.3 86 55.8
AUR62008551 Chenopodium quinoa HOM05D002637 ORTHO05D008095 5.1e-20 100.9 86 55.8
Eucgr.D01520 Eucalyptus grandis HOM05D002637 ORTHO05D008095 3.3e-19 98.2 87 51.7
Eucgr.D01526 Eucalyptus grandis HOM05D002637 ORTHO05D008095 5.6e-19 97.4 87 50.6
Ca_04041_v3 Cicer arietinum L. HOM05D002637 ORTHO05D008095 2.8e-18 95.1 51 88.2
Rhsim07G0035200 Rhododendron simsii HOM05D002637 ORTHO05D008095 8.1e-18 93.6 69 65.2
TPR.G36686 Trifolium pratense HOM05D002637 ORTHO05D008095 8.1e-18 93.6 58 82.8
FAN10G1960 Fragaria x ananassa HOM05D002637 ORTHO05D008095 1.8e-17 92.4 95 52.6
AagrBONN_evm.TU.Sc2ySwM_117.1982 Anthoceros agrestis HOM05D002637 ORTHO05D008095 5.8e-16 87.4 84 51.2
Prupe.2G128900 Prunus persica HOM05D002637 ORTHO05D008095 1.3e-15 86.3 82 56.1
Pp3c4_13850 Physcomitrium patens HOM05D002637 ORTHO05D008095 2.9e-15 85.1 85 51.8
COL.COLO4_12421 Corchorus olitorius HOM05D002637 ORTHO05D008095 1.9e-14 82.4 87 49.4
Zm00001eb186370 Zea mays HOM05D002637 ORTHO05D008095 1.9e-14 82.4 87 49.4
Pp3c12_10320 Physcomitrium patens HOM05D002637 ORTHO05D008095 3.2e-14 81.6 85 49.4
Os02g0655100 Oryza sativa ssp. japonica HOM05D002637 ORTHO05D008095 5.4e-14 80.9 87 48.3
MBI04_g07220_MAGBIO Magnolia biondii HOM05D002637 ORTHO05D008095 9.2e-14 80.1 75 56.0
AT2G44850 Arabidopsis thaliana HOM05D002637 ORTHO05D008095 1.6e-13 79.3 51 72.5
vmacro13491 Vaccinium macrocarpon HOM05D002637 ORTHO05D008095 1.3e-12 76.3 51 66.7
CiPaw.13G027200 Carya illinoinensis HOM05D002637 ORTHO05D008095 1.1e-11 73.2 51 64.7
HPP92_014683 Vanilla planifolia HOM05D002637 ORTHO05D008095 7.3e-11 70.5 88 42.0
ATR0057G061 Amborella trichopoda HOM05D002637 ORTHO05D008095 9.6e-11 70.1 68 52.9
FAN06G2370 Fragaria x ananassa HOM05D002637 ORTHO05D008095 9.0e-09 63.5 47 63.8
Phvul.011G167200 Phaseolus vulgaris HOM05D002637 ORTHO05D008095 7.6e-08 60.5 35 80.0
Aa31LG7G11720 Aethionema arabicum HOM05D002637 ORTHO05D008095 1.3e-07 59.7 51 54.9


User provided reference genes

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