Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G32957 Trifolium pratense HOM05D003898 ORTHO05D004642 3.5e-183 644.8 323 100.0
Ca_02530_v3 Cicer arietinum L. HOM05D003898 ORTHO05D004642 9.9e-154 547.0 323 85.8
Medtr4g112080 Medicago truncatula HOM05D003898 ORTHO05D004642 5.4e-152 541.2 323 84.5
TPR.G26798 Trifolium pratense HOM05D003898 ORTHO05D004642 4.6e-151 538.1 326 83.7
Psat5g107440 Pisum sativum HOM05D003898 ORTHO05D004642 9.6e-149 530.4 325 82.5
Medtr3g073550 Medicago truncatula HOM05D003898 ORTHO05D004642 2.1e-148 529.3 326 83.7
Lalb_Chr08g0241771 Lupinus albus HOM05D003898 ORTHO05D004642 1.7e-145 519.6 319 81.2
Lalb_Chr11g0065591 Lupinus albus HOM05D003898 ORTHO05D004642 2.2e-145 519.2 321 81.0
Glyma.06G107500 Glycine max HOM05D003898 ORTHO05D004642 2.4e-144 515.8 315 81.6
Lj1g0002951 Lotus japonicus HOM05D003898 ORTHO05D004642 1.0e-142 510.4 324 81.5
Glyma.04G254600 Glycine max HOM05D003898 ORTHO05D004642 4.3e-141 505.0 327 79.8
VMungo1309G1855 Vigna mungo HOM05D003898 ORTHO05D004642 6.2e-140 501.1 326 77.9
Phvul.009G026700 Phaseolus vulgaris HOM05D003898 ORTHO05D004642 1.4e-139 500.0 326 77.9
arahy.Tifrunner.gnm1.ann1.K1QIEY Arachis hypogaea HOM05D003898 ORTHO05D004642 5.3e-131 471.5 370 69.2
arahy.Tifrunner.gnm1.ann1.PF76WK Arachis hypogaea HOM05D003898 ORTHO05D004642 1.2e-127 460.3 276 84.1
arahy.Tifrunner.gnm1.ann1.HG05DD Arachis hypogaea HOM05D003898 ORTHO05D004642 9.7e-125 450.7 278 80.9
QL12p035494 Quercus lobata HOM05D003898 ORTHO05D004642 3.7e-124 448.7 321 68.8
arahy.Tifrunner.gnm1.ann1.Z23D3B Arachis hypogaea HOM05D003898 ORTHO05D004642 6.3e-124 448.0 285 80.4
Manes.02G157700 Manihot esculenta HOM05D003898 ORTHO05D004642 1.5e-122 443.4 323 69.0
CiPaw.06G023700 Carya illinoinensis HOM05D003898 ORTHO05D004642 5.5e-120 434.9 311 69.1
RcHm_v2.0_Chr7g0240421 Rosa chinensis HOM05D003898 ORTHO05D004642 2.7e-119 432.6 312 68.3
PGR044G1262 Punica granatum HOM05D003898 ORTHO05D004642 1.0e-118 430.6 324 67.3
Cpa.g.sc49.114 Carica papaya HOM05D003898 ORTHO05D004642 1.4e-118 430.3 327 66.4
Dinv13069 Davidia involucrata HOM05D003898 ORTHO05D004642 3.9e-118 428.7 327 67.6
CSS0048138 Camellia sinensis var. sinensis HOM05D003898 ORTHO05D004642 2.0e-117 426.4 323 68.1
CiPaw.05G230800 Carya illinoinensis HOM05D003898 ORTHO05D004642 2.0e-117 426.4 322 66.8
FvH4_5g38420 Fragaria vesca HOM05D003898 ORTHO05D004642 2.6e-117 426.0 312 67.9
TAR625G0437 Trochodendron aralioides HOM05D003898 ORTHO05D004642 3.3e-117 425.6 324 67.0
CSS0037064 Camellia sinensis var. sinensis HOM05D003898 ORTHO05D004642 4.4e-117 425.2 321 67.9
Prupe.1G507900 Prunus persica HOM05D003898 ORTHO05D004642 1.3e-116 423.7 312 68.3
Thecc.08G115200 Theobroma cacao HOM05D003898 ORTHO05D004642 2.8e-116 422.5 308 67.2
CANSAT25G0948 Cannabis sativa HOM05D003898 ORTHO05D004642 4.8e-116 421.8 304 69.4
COL.COLO4_16517 Corchorus olitorius HOM05D003898 ORTHO05D004642 4.8e-116 421.8 310 67.1
vmacro04776 Vaccinium macrocarpon HOM05D003898 ORTHO05D004642 1.8e-115 419.9 327 66.1
Solyc12g056840.2 Solanum lycopersicum HOM05D003898 ORTHO05D004642 4.1e-115 418.7 317 65.6
RcHm_v2.0_Chr1g0340891 Rosa chinensis HOM05D003898 ORTHO05D004642 6.9e-115 417.9 312 66.3
MSTRG.24959 Avicennia marina HOM05D003898 ORTHO05D004642 1.5e-114 416.8 320 65.6
Sopen12g029520 Solanum pennellii HOM05D003898 ORTHO05D004642 1.5e-114 416.8 317 65.3
MD08G1174000 Malus domestica HOM05D003898 ORTHO05D004642 2.6e-114 416.0 309 68.6
Potri.002G090500 Populus trichocarpa HOM05D003898 ORTHO05D004642 3.4e-114 415.6 322 64.6
Actinidia33168 Actinidia chinensis HOM05D003898 ORTHO05D004642 1.0e-113 414.1 325 67.1
Duzib093G1469 Durio zibethinus HOM05D003898 ORTHO05D004642 1.0e-113 414.1 310 66.5
Gorai.002G220000 Gossypium raimondii HOM05D003898 ORTHO05D004642 1.0e-113 414.1 309 68.6
PGSC0003DMG401016958 Solanum tuberosum HOM05D003898 ORTHO05D004642 1.0e-113 414.1 318 64.5
Gohir.D01G182400 Gossypium hirsutum HOM05D003898 ORTHO05D004642 1.7e-113 413.3 303 69.6
ClCG08G010840 Citrullus lanatus HOM05D003898 ORTHO05D004642 2.2e-113 412.9 327 63.6
EL10Ac6g15432 Beta vulgaris HOM05D003898 ORTHO05D004642 2.9e-113 412.5 316 65.5
FvH4_7g08221 Fragaria vesca HOM05D003898 ORTHO05D004642 2.9e-113 412.5 301 67.4
Aqoxy2G00480 Aquilegia oxysepala HOM05D003898 ORTHO05D004642 3.8e-113 412.1 312 64.7
Nitab4.5_0000425g0260 Nicotiana tabacum HOM05D003898 ORTHO05D004642 5.0e-113 411.8 318 63.8
Sc16g0001430 Simmondsia chinensis HOM05D003898 ORTHO05D004642 8.5e-113 411.0 319 65.2
SGA_v2.0_scaffold11G05890 Striga asiatica HOM05D003898 ORTHO05D004642 8.5e-113 411.0 320 65.3
Gohir.A01G187300 Gossypium hirsutum HOM05D003898 ORTHO05D004642 1.4e-112 410.2 303 69.0
Rhsim07G0198900 Rhododendron simsii HOM05D003898 ORTHO05D004642 3.2e-112 409.1 330 65.2
Ciclev10005436m.g Citrus clementina HOM05D003898 ORTHO05D004642 4.2e-112 408.7 310 67.1
MELO3C011378.2 Cucumis melo HOM05D003898 ORTHO05D004642 9.4e-112 407.5 313 63.6
Potri.005G170600 Populus trichocarpa HOM05D003898 ORTHO05D004642 3.6e-111 405.6 322 64.0
HanXRQChr05g0162311 Helianthus annuus HOM05D003898 ORTHO05D004642 1.8e-110 403.3 322 63.7
CAN.G47.19 Capsicum annuum HOM05D003898 ORTHO05D004642 3.0e-110 402.5 343 60.1
CsaV3_6G035700 Cucumis sativus L. HOM05D003898 ORTHO05D004642 3.0e-110 402.5 313 63.6
ECA246G0783 Erigeron canadensis HOM05D003898 ORTHO05D004642 3.0e-110 402.5 311 64.3
Sed0026073 Sechium edule HOM05D003898 ORTHO05D004642 3.9e-110 402.1 313 63.3
PSO210G6710 Papaver somniferum HOM05D003898 ORTHO05D004642 8.8e-110 401.0 315 63.5
Peaxi162Scf00160g01643 Petunia axillaris HOM05D003898 ORTHO05D004642 8.8e-110 401.0 320 62.5
Sabra02G0071500 Salix brachista HOM05D003898 ORTHO05D004642 1.1e-109 400.6 338 61.2
Haze_00543 Corylus avellana HOM05D003898 ORTHO05D004642 2.0e-109 399.8 348 59.8
Migut.C00215 Erythranthe guttata HOM05D003898 ORTHO05D004642 2.6e-109 399.4 317 63.4
FAN13G1941 Fragaria x ananassa HOM05D003898 ORTHO05D004642 5.7e-109 398.3 339 62.2
HanXRQChr01g0001161 Helianthus annuus HOM05D003898 ORTHO05D004642 5.7e-109 398.3 322 63.0
GSVIVG01008958001 Vitis vinifera HOM05D003898 ORTHO05D004642 7.4e-109 397.9 308 64.3
PSO447G0107 Papaver somniferum HOM05D003898 ORTHO05D004642 1.7e-108 396.7 315 62.5
THA.LOC104813137 Tarenaya hassleriana HOM05D003898 ORTHO05D004642 1.7e-108 396.7 327 62.4
Cfa015947 Carpinus fangiana HOM05D003898 ORTHO05D004642 2.2e-108 396.4 272 70.6
FAN08G2468 Fragaria x ananassa HOM05D003898 ORTHO05D004642 2.2e-108 396.4 333 61.9
TWI12G0005 Tripterygium wilfordii HOM05D003898 ORTHO05D004642 3.7e-108 395.6 320 64.4
AUR62019012 Chenopodium quinoa HOM05D003898 ORTHO05D004642 6.3e-108 394.8 317 65.0
AUR62027853 Chenopodium quinoa HOM05D003898 ORTHO05D004642 4.1e-107 392.1 316 64.9
DCAR_028260 Daucus carota HOM05D003898 ORTHO05D004642 4.1e-107 392.1 307 64.5
TAR381G1034 Trochodendron aralioides HOM05D003898 ORTHO05D004642 7.0e-107 391.3 273 71.8
Carub.0001s1201 Capsella rubella HOM05D003898 ORTHO05D004642 7.7e-106 387.9 310 62.3
Lsat_1_v5_gn_9_70200 Lactuca sativa HOM05D003898 ORTHO05D004642 1.0e-105 387.5 306 63.7
CARHR012640 Cardamine hirsuta HOM05D003898 ORTHO05D004642 2.9e-105 386.0 309 64.1
CAN.G617.2 Capsicum annuum HOM05D003898 ORTHO05D004642 1.5e-104 383.6 324 58.3
Sopen04g028670 Solanum pennellii HOM05D003898 ORTHO05D004642 2.5e-104 382.9 318 58.8
CDE10G0849 Ceratophyllum demersum HOM05D003898 ORTHO05D004642 3.2e-104 382.5 321 62.3
FAN01G1002 Fragaria x ananassa HOM05D000001 ORTHO05D000003 7.2e-104 381.3 313 63.6
Sp6g40350 Schrenkiella parvula HOM05D003898 ORTHO05D004642 1.2e-103 380.6 309 63.1
A10p33510 Brassica napus HOM05D003898 ORTHO05D004642 1.6e-103 380.2 309 60.8
C09p74420 Brassica napus HOM05D003898 ORTHO05D004642 4.7e-103 378.6 309 61.5
Aa31LG9G14440 Aethionema arabicum HOM05D003898 ORTHO05D004642 8.0e-103 377.9 292 66.1
Thhalv10014147m.g Eutrema salsugineum HOM05D003898 ORTHO05D004642 8.0e-103 377.9 310 61.6
Nitab4.5_0006745g0040 Nicotiana tabacum HOM05D003898 ORTHO05D004642 1.4e-102 377.1 388 53.1
Lj4C109T16 Lonicera japonica HOM05D003898 ORTHO05D004642 5.2e-102 375.2 351 58.4
BcaNung04450 Brassica carinata HOM05D003898 ORTHO05D004642 8.8e-102 374.4 309 61.2
AT1G12350 Arabidopsis thaliana HOM05D003898 ORTHO05D004642 3.3e-101 372.5 310 61.6
BraA02t04709Z Brassica rapa HOM05D003898 ORTHO05D004642 3.3e-101 372.5 315 61.0
CANSAT01G0632 Cannabis sativa HOM05D003898 ORTHO05D004642 7.5e-101 371.3 311 63.3
Lsat_1_v5_gn_6_68860 Lactuca sativa HOM05D003898 ORTHO05D004642 1.7e-100 370.2 272 66.9
BolC9t60175H Brassica oleracea HOM05D003898 ORTHO05D004642 2.2e-100 369.8 309 60.5
Solyc04g072480.3 Solanum lycopersicum HOM05D003898 ORTHO05D004642 6.3e-100 368.2 348 54.6
BraA10t45381Z Brassica rapa HOM05D003898 ORTHO05D004642 1.8e-99 366.7 335 56.4
Cc10_g06070 Coffea canephora HOM05D003898 ORTHO05D004642 5.3e-99 365.2 275 65.1
Oeu038191.1 Olea europaea HOM05D003898 ORTHO05D004642 7.0e-99 364.8 292 63.7
AL1G23670 Arabidopsis lyrata HOM05D003898 ORTHO05D004642 3.5e-98 362.5 310 60.0
C02p00370 Brassica napus HOM05D003898 ORTHO05D004642 4.5e-98 362.1 308 60.1
BcaNung06026 Brassica carinata HOM05D003898 ORTHO05D004642 5.0e-97 358.6 308 59.4
SEGI_30417 Sequoiadendron giganteum HOM05D003898 ORTHO05D004642 4.0e-94 349.0 314 58.0
HPP92_006004 Vanilla planifolia HOM05D003898 ORTHO05D004642 1.2e-93 347.4 325 57.2
Os08g0176100 Oryza sativa ssp. japonica HOM05D003898 ORTHO05D004642 3.4e-93 345.9 304 57.6
SalBow7G2097 Salvia bowleyana HOM05D003898 ORTHO05D004642 4.4e-93 345.5 325 57.5
Os02g0575200 Oryza sativa ssp. japonica HOM05D003898 ORTHO05D004642 9.8e-93 344.4 307 57.7
Zm00001eb182920 Zea mays HOM05D003898 ORTHO05D004642 1.7e-92 343.6 304 58.2
Zm00001eb414730 Zea mays HOM05D003898 ORTHO05D004642 2.4e-91 339.7 317 56.8
RcHm_v2.0_Chr1g0340911 Rosa chinensis HOM05D003898 ORTHO05D004642 4.1e-91 339.0 254 66.9
Mapoly0004s0284 Marchantia polymorpha HOM05D003898 ORTHO05D004642 1.6e-90 337.0 314 56.1
Pp3c11_3000 Physcomitrium patens HOM05D003898 ORTHO05D004642 1.6e-90 337.0 307 54.1
FvH4_5g38402 Fragaria vesca HOM05D003898 ORTHO05D004642 2.7e-90 336.3 242 66.5
Nitab4.5_0001307g0170 Nicotiana tabacum HOM05D003898 ORTHO05D004642 6.5e-89 331.6 321 53.9
CSS0031031 Camellia sinensis var. sinensis HOM05D003898 ORTHO05D004642 2.3e-86 323.2 323 55.1
Nn1g05207 Nelumbo nucifera HOM05D003898 ORTHO05D004642 2.6e-85 319.7 243 63.4
Solyc10g011840.3 Solanum lycopersicum HOM05D003898 ORTHO05D004642 4.4e-85 318.9 324 52.2
Duzib116G0208 Durio zibethinus HOM05D003898 ORTHO05D004642 9.5e-80 301.2 310 52.9
FAN06G3434 Fragaria x ananassa HOM05D000001 ORTHO05D000003 2.1e-79 300.1 312 52.6
MD15G1360400 Malus domestica HOM05D003898 ORTHO05D004642 7.5e-77 291.6 227 65.6
ATR0564G227 Amborella trichopoda HOM05D003898 ORTHO05D004642 3.5e-74 282.7 232 60.8
ClCG08G002640 Citrullus lanatus HOM05D003898 ORTHO05D004642 3.5e-74 282.7 459 41.4
Psat4g046560 Pisum sativum HOM05D003898 ORTHO05D011365 2.5e-72 276.6 173 82.7
Ca_25770_v3 Cicer arietinum L. HOM05D003898 ORTHO05D004642 3.6e-71 272.7 168 83.9
AL6G11300 Arabidopsis lyrata HOM05D003898 ORTHO05D004642 4.7e-71 272.3 201 67.7
SMO137G0130 Selaginella moellendorffii HOM05D003898 ORTHO05D004642 1.1e-70 271.2 308 49.0
SalBow1G7967 Salvia bowleyana HOM05D003898 ORTHO05D004642 7.5e-69 265.0 307 48.5
FAN04G1035 Fragaria x ananassa HOM05D003898 ORTHO05D004642 2.0e-61 240.4 210 61.4
Atru.chr13.1300 Acer truncatum HOM05D003898 ORTHO05D004642 2.2e-60 236.9 171 71.3
SMO137G0020 Selaginella moellendorffii HOM05D003898 ORTHO05D004642 9.2e-59 231.5 268 50.0
PRCOL_00003493 Prasinoderma coloniale HOM05D003898 ORTHO05D004642 1.1e-56 224.6 355 39.4
CDE10G0276 Ceratophyllum demersum HOM05D003898 ORTHO05D004642 1.5e-56 224.2 162 66.7
PGSC0003DMG400027542 Solanum tuberosum HOM05D003898 ORTHO05D004642 1.5e-56 224.2 183 61.7
AT5G02080 Arabidopsis thaliana HOM05D003898 ORTHO05D004642 1.9e-56 223.8 195 60.0
AagrBONN_evm.TU.Sc2ySwM_344.1574 Anthoceros agrestis HOM05D003898 ORTHO05D004642 2.1e-55 220.3 199 55.8
Dinv44720 Davidia involucrata HOM05D003898 ORTHO05D004642 3.1e-54 216.5 180 63.3
BolC2t06037H Brassica oleracea HOM05D003898 ORTHO05D004642 8.9e-54 214.9 170 63.5
Cre01.g048050 Chlamydomonas reinhardtii HOM05D003898 ORTHO05D004642 1.3e-52 211.1 316 41.8
MCO09G707 Micromonas commoda HOM05D003898 ORTHO05D004642 1.7e-52 210.7 285 44.2
Eucgr.F04382 Eucalyptus grandis HOM05D003898 ORTHO05D004642 2.9e-52 209.9 148 68.9
DCAR_027594 Daucus carota HOM05D003898 ORTHO05D004642 1.9e-51 207.2 216 53.2
Sopen10g005660 Solanum pennellii HOM05D003898 ORTHO05D004642 7.1e-51 205.3 221 49.3
SMO137G0337 Selaginella moellendorffii HOM05D003898 ORTHO05D004642 1.7e-49 200.7 217 50.2
FAN18G1940 Fragaria x ananassa HOM05D003898 ORTHO05D004642 1.1e-46 191.4 195 54.9
Nitab4.5_0000553g0060 Nicotiana tabacum HOM05D003898 ORTHO05D004642 6.9e-46 188.7 248 45.6
Lj4C710T9 Lonicera japonica HOM05D003898 ORTHO05D004642 2.0e-45 187.2 138 68.8
unitig_32.g11143 Utricularia gibba HOM05D003898 ORTHO05D004642 3.2e-43 179.9 132 67.4
Atru.chr13.1301 Acer truncatum HOM05D003898 ORTHO05D004642 3.5e-42 176.4 138 60.9
Cfa024377 Carpinus fangiana HOM05D003898 ORTHO05D004642 4.6e-42 176.0 311 40.2
arahy.Tifrunner.gnm1.ann1.Z5SK82 Arachis hypogaea HOM05D003898 ORTHO05D004642 5.6e-40 169.1 182 55.5
CBR_g9000 Chara braunii HOM05D003898 ORTHO05D004642 1.3e-39 167.9 167 49.7
SEGI_10597 Sequoiadendron giganteum HOM05D003898 ORTHO05D004642 1.2e-37 161.4 149 57.0
Atru.chr4.493 Acer truncatum HOM05D003898 ORTHO05D004642 1.3e-36 157.9 121 61.2
Atru.chr1.2069 Acer truncatum HOM05D003898 ORTHO05D004642 4.9e-36 156.0 116 63.8
arahy.Tifrunner.gnm1.ann1.N7W281 Arachis hypogaea HOM05D003898 ORTHO05D004642 3.3e-32 143.3 143 59.4
Duzib041G0680 Durio zibethinus HOM05D003898 ORTHO05D004642 5.3e-30 136.0 106 66.0
CBR_g9001 Chara braunii HOM05D003898 ORTHO05D004642 6.7e-25 119.0 118 54.2
Aqoxy480s002 Aquilegia oxysepala HOM05D003898 ORTHO05D004642 1.3e-23 114.8 126 47.6
unitig_32.g11144 Utricularia gibba HOM05D003898 ORTHO05D004642 3.7e-23 113.2 136 49.3
arahy.Tifrunner.gnm1.ann1.9J7JQ6 Arachis hypogaea HOM05D003898 ORTHO05D004642 3.8e-20 103.2 62 79.0
QL10p044069 Quercus lobata HOM05D003898 ORTHO05D004642 2.5e-16 90.5 80 56.2
QL02p062685 Quercus lobata HOM05D003898 ORTHO05D004642 3.7e-15 86.7 80 55.0
arahy.Tifrunner.gnm1.ann1.KW4E90 Arachis hypogaea HOM05D003898 ORTHO05D004642 4.1e-14 83.2 97 50.5
Ah.05g170600 Amaranthus hybridus HOM05D003898 ORTHO05D004642 6.9e-14 82.4 90 48.9
QL10p009819 Quercus lobata HOM05D003898 ORTHO05D004642 3.2e-11 73.6 61 60.7
QL08p011560 Quercus lobata HOM05D003898 ORTHO05D004642 5.5e-11 72.8 61 60.7
Peaxi162Scf00756g00110 Petunia axillaris HOM05D003898 ORTHO05D004642 9.4e-11 72.0 88 44.3
Aqoxy5G01116 Aquilegia oxysepala HOM05D003898 ORTHO05D004642 2.3e-09 67.4 45 73.3
TPR.G17539 Trifolium pratense HOM05D003898 ORTHO05D411187 1.3e-07 61.6 37 75.7
arahy.Tifrunner.gnm1.ann1.YUT84C Arachis hypogaea HOM05D003898 ORTHO05D004642 9.1e-06 55.5 56 55.4


User provided reference genes

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