Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G3295 Trifolium pratense HOM05D005301 ORTHO05D006433 1.6e-253 879.0 467 100.0
Medtr1g107265 Medicago truncatula HOM05D005301 ORTHO05D006433 1.9e-222 775.8 494 85.8
Psat6g217880 Pisum sativum HOM05D005301 ORTHO05D006433 2.5e-214 748.8 459 88.0
Ca_16092_v3 Cicer arietinum L. HOM05D005301 ORTHO05D006433 1.6e-213 746.1 459 83.7
Phvul.009G169100 Phaseolus vulgaris HOM05D005301 ORTHO05D006433 8.3e-210 733.8 459 86.1
Lj1g0016804 Lotus japonicus HOM05D005301 ORTHO05D006433 2.4e-209 732.3 459 86.5
Glyma.06G173200 Glycine max HOM05D005301 ORTHO05D006433 9.1e-209 730.3 459 86.5
Lalb_Chr11g0069731 Lupinus albus HOM05D005301 ORTHO05D006433 2.9e-207 725.3 459 85.2
arahy.Tifrunner.gnm1.ann1.86E75A Arachis hypogaea HOM05D005301 ORTHO05D006433 7.2e-206 720.7 462 86.4
arahy.Tifrunner.gnm1.ann1.11HRG0 Arachis hypogaea HOM05D005301 ORTHO05D006433 3.6e-205 718.4 462 86.1
Glyma.04G192600 Glycine max HOM05D005301 ORTHO05D006433 3.4e-203 711.8 459 85.0
VMungo1309G2118 Vigna mungo HOM05D005301 ORTHO05D006433 2.2e-202 709.1 445 86.1
QL10p005311 Quercus lobata HOM05D005301 ORTHO05D006433 1.7e-183 646.4 469 75.7
CiPaw.11G012400 Carya illinoinensis HOM05D005301 ORTHO05D006433 1.4e-177 626.7 475 73.1
Manes.06G114900 Manihot esculenta HOM05D005301 ORTHO05D006433 1.9e-177 626.3 474 75.7
Cfa018895 Carpinus fangiana HOM05D005301 ORTHO05D006433 7.1e-177 624.4 470 68.3
Dinv11108 Davidia involucrata HOM05D005301 ORTHO05D006433 6.0e-176 621.3 488 69.7
Sabra15G0112300 Salix brachista HOM05D005301 ORTHO05D006433 6.0e-176 621.3 476 74.4
GSVIVG01007548001 Vitis vinifera HOM05D005301 ORTHO05D006433 6.0e-176 621.3 468 72.6
Potri.015G090100 Populus trichocarpa HOM05D005301 ORTHO05D006433 7.8e-176 620.9 475 74.3
Haze_07279 Corylus avellana HOM05D005301 ORTHO05D006433 2.3e-175 619.4 474 67.7
MD06G1157400 Malus domestica HOM05D005301 ORTHO05D006433 1.9e-174 616.3 468 73.1
Prupe.5G157400 Prunus persica HOM05D005301 ORTHO05D006433 3.3e-174 615.5 466 73.6
Ciclev10019136m.g Citrus clementina HOM05D005301 ORTHO05D006433 3.6e-173 612.1 476 71.0
PGSC0003DMG400015238 Solanum tuberosum HOM05D005301 ORTHO05D006433 6.2e-173 611.3 470 72.1
CANSAT80G2324 Cannabis sativa HOM05D005301 ORTHO05D006433 1.1e-172 610.5 458 74.0
TWI39G1189 Tripterygium wilfordii HOM05D005301 ORTHO05D006433 8.9e-172 607.4 473 72.5
Nn4g22465 Nelumbo nucifera HOM05D005301 ORTHO05D006433 3.4e-171 605.5 468 70.5
PGR083G1269 Punica granatum HOM05D005301 ORTHO05D006433 5.8e-171 604.7 478 69.5
Sed0013046 Sechium edule HOM05D005301 ORTHO05D006433 5.8e-171 604.7 462 71.4
Gohir.D12G190800 Gossypium hirsutum HOM05D005301 ORTHO05D006433 9.9e-171 604.0 474 71.5
Gohir.A12G188000 Gossypium hirsutum HOM05D005301 ORTHO05D006433 1.7e-170 603.2 477 72.1
Oeu011576.1 Olea europaea HOM05D005301 ORTHO05D006433 1.7e-170 603.2 471 68.4
CsaV3_1G000790 Cucumis sativus L. HOM05D005301 ORTHO05D006433 2.2e-170 602.8 466 69.7
Gorai.008G204700 Gossypium raimondii HOM05D005301 ORTHO05D006433 3.8e-170 602.1 476 71.6
RcHm_v2.0_Chr7g0191331 Rosa chinensis HOM05D005301 ORTHO05D006433 4.9e-170 601.7 458 73.4
TAR374G1436 Trochodendron aralioides HOM05D005301 ORTHO05D006433 1.1e-169 600.5 474 70.5
Nitab4.5_0010042g0030 Nicotiana tabacum HOM05D005301 ORTHO05D006433 4.2e-169 598.6 472 71.0
Nitab4.5_0003282g0130 Nicotiana tabacum HOM05D005301 ORTHO05D006433 1.6e-168 596.7 471 70.3
Sopen03g030520 Solanum pennellii HOM05D005301 ORTHO05D006433 1.6e-168 596.7 471 70.9
FAN04G2720 Fragaria x ananassa HOM05D005301 ORTHO05D006433 2.7e-168 595.9 460 73.0
Eucgr.L01339 Eucalyptus grandis HOM05D005301 ORTHO05D006433 4.6e-168 595.1 475 68.8
FvH4_5g07300 Fragaria vesca HOM05D005301 ORTHO05D006433 4.6e-168 595.1 460 72.8
FAN18G2536 Fragaria x ananassa HOM05D005301 ORTHO05D006433 4.6e-168 595.1 460 72.8
Solyc03g111390.4 Solanum lycopersicum HOM05D005301 ORTHO05D006433 7.8e-168 594.3 471 70.9
Aqoxy5G03589 Aquilegia oxysepala HOM05D005301 ORTHO05D006433 1.0e-167 594.0 467 69.2
HanXRQChr09g0272861 Helianthus annuus HOM05D005301 ORTHO05D006433 1.7e-167 593.2 464 71.3
CAN.G352.5 Capsicum annuum HOM05D005301 ORTHO05D006433 5.1e-167 591.7 471 69.6
Duzib205G0739 Durio zibethinus HOM05D005301 ORTHO05D006433 6.6e-167 591.3 498 69.1
Actinidia16194 Actinidia chinensis HOM05D005301 ORTHO05D006433 1.5e-166 590.1 472 70.3
FAN13G0064 Fragaria x ananassa HOM05D005301 ORTHO05D006433 4.3e-166 588.6 471 70.3
THA.LOC104825004 Tarenaya hassleriana HOM05D005301 ORTHO05D006433 7.3e-166 587.8 464 70.7
vmacro19243 Vaccinium macrocarpon HOM05D005301 ORTHO05D006433 1.1e-164 583.9 471 65.6
Cc04_g10470 Coffea canephora HOM05D005301 ORTHO05D006433 1.4e-164 583.6 452 72.3
Aa31LG3G5920 Aethionema arabicum HOM05D005301 ORTHO05D006433 5.3e-164 581.6 462 69.9
Lsat_1_v5_gn_4_78900 Lactuca sativa HOM05D005301 ORTHO05D006433 2.0e-163 579.7 467 69.8
Sc22g0004050 Simmondsia chinensis HOM05D005301 ORTHO05D006433 3.4e-163 578.9 473 67.2
AL8G24360 Arabidopsis lyrata HOM05D005301 ORTHO05D006433 9.9e-163 577.4 458 69.9
Carub.0008s1035 Capsella rubella HOM05D005301 ORTHO05D006433 9.9e-163 577.4 458 69.7
CARHR258240 Cardamine hirsuta HOM05D005301 ORTHO05D006433 9.9e-163 577.4 467 69.2
AT5G50310 Arabidopsis thaliana HOM05D005301 ORTHO05D006433 1.7e-162 576.6 462 68.8
FAN08G2537 Fragaria x ananassa HOM05D005301 ORTHO05D006433 4.2e-161 572.0 458 65.7
BcaC01g04820 Brassica carinata HOM05D005301 ORTHO05D006433 9.3e-161 570.9 456 69.3
C03p33480 Brassica napus HOM05D005301 ORTHO05D006433 9.3e-161 570.9 454 69.4
Thhalv10012907m.g Eutrema salsugineum HOM05D005301 ORTHO05D006433 9.3e-161 570.9 456 70.8
ECA232G2312 Erigeron canadensis HOM05D005301 ORTHO05D006433 1.2e-160 570.5 462 70.6
BraA03t11987Z Brassica rapa HOM05D005301 ORTHO05D006433 2.7e-160 569.3 452 68.6
Migut.I00257 Erythranthe guttata HOM05D005301 ORTHO05D006433 2.7e-160 569.3 474 67.9
EL10Ac7g18070 Beta vulgaris HOM05D005301 ORTHO05D006433 6.0e-160 568.2 472 66.1
Sp6g12390 Schrenkiella parvula HOM05D005301 ORTHO05D006433 1.0e-159 567.4 454 68.7
A03p27760 Brassica napus HOM05D005301 ORTHO05D006433 1.3e-159 567.0 452 68.6
BolC3t15670H Brassica oleracea HOM05D005301 ORTHO05D006433 3.9e-159 565.5 452 68.6
SalBow4G2023 Salvia bowleyana HOM05D005301 ORTHO05D006433 3.9e-159 565.5 467 66.0
Ah.08g218140 Amaranthus hybridus HOM05D005301 ORTHO05D006433 1.9e-158 563.1 464 70.3
SGA_v2.0_scaffold102G29851 Striga asiatica HOM05D005301 ORTHO05D006433 2.8e-157 559.3 460 68.0
MELO3C026231.2 Cucumis melo HOM05D005301 ORTHO05D006433 3.6e-157 558.9 470 66.0
Rhsim08G0184700 Rhododendron simsii HOM05D005301 ORTHO05D006433 3.6e-157 558.9 498 60.6
CDE02G1357 Ceratophyllum demersum HOM05D005301 ORTHO05D006433 4.0e-156 555.4 454 65.9
ATR0824G115 Amborella trichopoda HOM05D004726 ORTHO05D005986 5.3e-156 555.1 468 68.2
PSO063G0990 Papaver somniferum HOM05D005301 ORTHO05D006433 2.6e-155 552.7 443 67.5
PSO782G4848 Papaver somniferum HOM05D005301 ORTHO05D006433 9.9e-155 550.8 450 66.4
MD14G1164000 Malus domestica HOM05D005301 ORTHO05D006433 1.3e-154 550.4 482 65.6
Os04g0483600 Oryza sativa ssp. japonica HOM05D005301 ORTHO05D006433 3.2e-153 545.8 447 68.2
COL.COLO4_09264 Corchorus olitorius HOM05D005301 ORTHO05D006433 4.2e-153 545.4 440 65.2
AUR62001274 Chenopodium quinoa HOM05D005301 ORTHO05D006433 3.9e-151 538.9 450 64.4
Zm00001eb079290 Zea mays HOM05D005301 ORTHO05D006433 7.4e-150 534.6 457 65.6
DCAR_016415 Daucus carota HOM05D005301 ORTHO05D006433 2.8e-149 532.7 460 62.0
ClCG06G017670 Citrullus lanatus HOM05D005301 ORTHO05D006433 1.8e-143 513.5 458 59.6
Eucgr.B00150 Eucalyptus grandis HOM05D005301 ORTHO05D006433 9.6e-142 507.7 473 63.0
MBI06_g16660_MAGBIO Magnolia biondii HOM05D005301 ORTHO05D006433 3.7e-141 505.8 434 65.4
BcaC01g04819 Brassica carinata HOM05D005301 ORTHO05D006433 1.9e-137 493.4 456 58.6
Hund05643 Selenicereus undatus HOM05D005301 ORTHO05D006433 7.9e-136 488.0 468 62.2
Atru.chr9.1005 Acer truncatum HOM05D005301 ORTHO05D006433 1.3e-133 480.7 394 69.0
BcaB01g02903 Brassica carinata HOM05D005301 ORTHO05D006433 3.7e-133 479.2 455 62.9
Thecc.03G122400 Theobroma cacao HOM05D005301 ORTHO05D006433 1.4e-132 477.2 392 66.8
AagrBONN_evm.TU.Sc2ySwM_344.1825 Anthoceros agrestis HOM05D005301 ORTHO05D006433 2.5e-129 466.5 460 56.5
AUR62025732 Chenopodium quinoa HOM05D005301 ORTHO05D006433 1.5e-126 457.2 451 56.3
Pp3c16_5780 Physcomitrium patens HOM05D005301 ORTHO05D006433 2.4e-124 449.9 459 56.6
SMO339G0058 Selaginella moellendorffii HOM05D005301 ORTHO05D006433 8.5e-122 441.4 465 49.2
Peaxi162Scf00089g00721 Petunia axillaris HOM05D005301 ORTHO05D006433 3.0e-119 433.0 416 62.3
Mapoly0001s0540 Marchantia polymorpha HOM05D005301 ORTHO05D006433 3.3e-118 429.5 460 54.8
unitig_899.g15425 Utricularia gibba HOM05D005301 ORTHO05D006433 2.2e-117 426.8 460 55.9
Lj9A475G62 Lonicera japonica HOM05D005301 ORTHO05D006433 6.3e-117 425.2 473 51.2
HPP92_004591 Vanilla planifolia HOM05D005301 ORTHO05D006433 3.2e-105 386.3 393 57.8
CBR_g40809 Chara braunii HOM05D005301 ORTHO05D006433 2.4e-100 370.2 545 42.8
Hund05630 Selenicereus undatus HOM05D005301 ORTHO05D006433 1.5e-97 360.9 386 60.4
CSS0025438 Camellia sinensis var. sinensis HOM05D005301 ORTHO05D006433 3.0e-87 326.6 293 69.3
MBI06_g32519_MAGBIO Magnolia biondii HOM05D005301 ORTHO05D006433 3.6e-80 303.1 232 74.6
Cpa.g.sc52.37 Carica papaya HOM05D005301 ORTHO05D006433 6.8e-79 298.9 251 61.4
Cpa.g.sc52.36 Carica papaya HOM05D005301 ORTHO05D006433 2.2e-77 293.9 223 80.7
QL04p021669 Quercus lobata HOM05D005301 ORTHO05D006433 2.5e-73 280.4 196 69.9
SEGI_14135 Sequoiadendron giganteum HOM05D005301 ORTHO05D006433 2.6e-70 270.4 351 53.0
Actinidia19384 Actinidia chinensis HOM05D005301 ORTHO05D006433 4.2e-44 183.3 400 41.0
PRCOL_00006105 Prasinoderma coloniale HOM05D005301 ORTHO05D006433 3.4e-38 163.7 296 36.1
SMO200G0253 Selaginella moellendorffii HOM05D005301 ORTHO05D006433 6.4e-37 159.5 440 30.7
SMO307G0058 Selaginella moellendorffii HOM05D003015 ORTHO05D003733 1.4e-36 158.3 450 29.8
MCO16G658 Micromonas commoda HOM05D005301 ORTHO05D006433 3.2e-36 157.1 327 32.4
SMO200G0172 Selaginella moellendorffii HOM05D005301 ORTHO05D006433 3.5e-35 153.7 523 30.2
Cre09.g398200 Chlamydomonas reinhardtii HOM05D005301 ORTHO05D006433 8.1e-32 142.5 354 30.2
HPP92_004592 Vanilla planifolia HOM05D004180 ORTHO05D005323 1.9e-25 121.3 82 76.8
SMO200G0119 Selaginella moellendorffii HOM05D005301 ORTHO05D006433 7.4e-25 119.4 420 27.1
Lsat_1_v5_gn_9_521 Lactuca sativa HOM05D005301 ORTHO05D006433 1.3e-24 118.6 70 78.6
Lsat_1_v5_gn_2_63001 Lactuca sativa HOM05D005301 ORTHO05D006433 8.2e-24 115.9 70 77.1
HPP92_004584 Vanilla planifolia HOM05D005301 ORTHO05D006433 3.4e-22 110.5 62 74.2
SMO089G0014 Selaginella moellendorffii HOM05D005301 ORTHO05D006433 1.7e-21 108.2 178 38.8
SMO001G0006 Selaginella moellendorffii HOM05D003015 ORTHO05D003733 3.5e-19 100.5 443 27.3
SMO024G0003 Selaginella moellendorffii HOM05D005301 ORTHO05D006433 3.0e-18 97.4 78 66.7
SMO200G0133 Selaginella moellendorffii HOM05D005301 ORTHO05D006433 8.2e-16 89.4 60 65.0
Lj9A475G63 Lonicera japonica HOM05D005301 ORTHO05D006433 4.1e-15 87.0 47 76.6
SMO089G0017 Selaginella moellendorffii HOM05D005301 ORTHO05D006433 4.1e-15 87.0 60 63.3
SMO200G0165 Selaginella moellendorffii HOM05D005301 ORTHO05D006433 5.3e-15 86.7 214 34.1
Cre04.g217938 Chlamydomonas reinhardtii HOM05D005301 ORTHO05D006433 2.0e-14 84.7 248 29.8
Peaxi162Scf00089g00716 Petunia axillaris HOM05D005301 ORTHO05D006433 2.0e-14 84.7 54 85.2
Nitab4.5_0013392g0010 Nicotiana tabacum HOM05D001426 ORTHO05D001389 5.0e-13 80.1 40 85.0
RcHm_v2.0_Chr7g0231611 Rosa chinensis HOM05D005301 ORTHO05D006433 5.1e-10 70.1 62 54.8
Cre04.g217925 Chlamydomonas reinhardtii HOM05D039214 ORTHO05D006433 2.0e-09 68.2 271 26.2
RcHm_v2.0_Chr6g0266051 Rosa chinensis HOM05D005301 ORTHO05D006433 1.7e-08 65.1 35 80.0
arahy.Tifrunner.gnm1.ann1.CFJ0KE Arachis hypogaea HOM05D000956 ORTHO05D003111 1.4e-07 62.0 146 28.1
arahy.Tifrunner.gnm1.ann1.K9835S Arachis hypogaea HOM05D000956 ORTHO05D003111 1.4e-07 62.0 146 28.1
MCO07G635 Micromonas commoda HOM05D001137 ORTHO05D003111 5.3e-07 60.1 117 30.8
Eucgr.B00154 Eucalyptus grandis HOM05D005301 ORTHO05D006433 1.5e-06 58.5 111 29.7
Lj4g0021111 Lotus japonicus HOM05D001137 ORTHO05D005066 2.0e-06 58.2 122 31.1
AagrBONN_evm.TU.Sc2ySwM_344.1606 Anthoceros agrestis HOM05D001137 ORTHO05D005066 7.7e-06 56.2 136 27.9


User provided reference genes

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