Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G32889 Trifolium pratense HOM05D007995 ORTHO05D001819 5.9e-92 340.9 177 100.0
Medtr8g032810 Medicago truncatula HOM05D007995 ORTHO05D001819 1.2e-57 226.9 177 68.4
TPR.G28273 Trifolium pratense HOM05D007995 ORTHO05D001819 4.7e-57 224.9 175 68.6
Ca_06775_v3 Cicer arietinum L. HOM05D007995 ORTHO05D001819 3.0e-51 205.7 180 61.7
Psat1g086800 Pisum sativum HOM05D007995 ORTHO05D001819 9.6e-50 200.7 179 60.9
Medtr4g025010 Medicago truncatula HOM05D007995 ORTHO05D001819 5.2e-48 194.9 178 61.2
TPR.G16193 Trifolium pratense HOM05D007995 ORTHO05D001819 3.8e-46 188.7 174 58.0
Medtr6g024035 Medicago truncatula HOM05D007995 ORTHO05D001819 1.6e-44 183.3 175 57.1
Medtr6g024040 Medicago truncatula HOM05D007995 ORTHO05D001819 1.3e-43 180.3 184 56.5
Medtr6g024020 Medicago truncatula HOM05D007995 ORTHO05D001819 1.2e-39 167.2 176 55.1
Ca_31166_v3 Cicer arietinum L. HOM05D007995 ORTHO05D001819 1.5e-39 166.8 157 59.2
Glyma.15G207000 Glycine max HOM05D007995 ORTHO05D001819 1.0e-35 154.1 177 51.4
Glyma.15G207100 Glycine max HOM05D007995 ORTHO05D001819 2.3e-35 152.9 177 50.8
Psat3g149840 Pisum sativum HOM05D007995 ORTHO05D001819 3.0e-35 152.5 176 54.0
Lalb_Chr04g0256671 Lupinus albus HOM05D007995 ORTHO05D001819 1.8e-32 143.3 175 48.6
Lalb_Chr16g0386221 Lupinus albus HOM05D007995 ORTHO05D001819 4.5e-31 138.7 178 46.6
Lalb_Chr16g0386301 Lupinus albus HOM05D007995 ORTHO05D001819 5.8e-31 138.3 174 45.4
TPR.G36428 Trifolium pratense HOM05D007995 ORTHO05D001819 5.8e-31 138.3 178 48.3
Lalb_Chr16g0386201 Lupinus albus HOM05D007995 ORTHO05D001819 7.6e-31 137.9 178 46.1
Lalb_Chr14g0367641 Lupinus albus HOM05D007995 ORTHO05D001819 2.9e-30 136.0 176 46.0
TPR.G30439 Trifolium pratense HOM05D007995 ORTHO05D001819 4.9e-30 135.2 178 46.6
Lj3g0018744 Lotus japonicus HOM05D007995 ORTHO05D001819 1.1e-29 134.0 178 43.8
Phvul.007G271600 Phaseolus vulgaris HOM05D007995 ORTHO05D001819 2.4e-29 132.9 177 44.1
Lalb_Chr16g0386271 Lupinus albus HOM05D007995 ORTHO05D001819 5.4e-29 131.7 172 44.8
Phvul.007G271650 Phaseolus vulgaris HOM05D007995 ORTHO05D001819 4.6e-28 128.6 177 43.5
VMungo0720G2167 Vigna mungo HOM05D007995 ORTHO05D001819 4.6e-28 128.6 177 44.6
Ca_14013_v3 Cicer arietinum L. HOM05D007995 ORTHO05D001819 6.0e-28 128.3 179 43.0
TPR.G33129 Trifolium pratense HOM05D007995 ORTHO05D001819 6.0e-28 128.3 178 44.4
Medtr6g023905 Medicago truncatula HOM05D007995 ORTHO05D001819 5.1e-27 125.2 172 42.4
TPR.G30442 Trifolium pratense HOM05D007995 ORTHO05D001819 5.1e-27 125.2 177 44.1
TPR.G16188 Trifolium pratense HOM05D007995 ORTHO05D001819 8.7e-27 124.4 173 43.4
Medtr6g023995 Medicago truncatula HOM05D007995 ORTHO05D001819 1.1e-26 124.0 153 47.7
Ca_30953_v3 Cicer arietinum L. HOM05D007995 ORTHO05D001819 1.5e-26 123.6 179 41.9
arahy.Tifrunner.gnm1.ann1.8T8NTE Arachis hypogaea HOM05D007995 ORTHO05D001819 3.3e-26 122.5 184 42.4
Medtr5g095680 Medicago truncatula HOM05D007995 ORTHO05D001819 1.3e-25 120.6 176 45.5
Medtr6g023935 Medicago truncatula HOM05D007995 ORTHO05D001819 1.6e-25 120.2 176 42.0
Medtr6g023915 Medicago truncatula HOM05D007995 ORTHO05D001819 2.1e-25 119.8 176 41.5
Ca_31346_v3 Cicer arietinum L. HOM05D007995 ORTHO05D001819 1.4e-24 117.1 179 41.9
Lalb_Chr22g0356001 Lupinus albus HOM05D007995 ORTHO05D001819 1.4e-24 117.1 157 42.7
Lalb_Chr14g0366281 Lupinus albus HOM05D007995 ORTHO05D001819 5.3e-24 115.2 172 41.9
Psat1g140040 Pisum sativum HOM05D007995 ORTHO05D001819 9.0e-24 114.4 167 40.7
Ca_31352_v3 Cicer arietinum L. HOM05D007995 ORTHO05D001819 1.2e-23 114.0 179 40.2
Medtr6g024185 Medicago truncatula HOM05D007995 ORTHO05D001819 2.0e-23 113.2 170 40.6
Ca_28343_v3 Cicer arietinum L. HOM05D007995 ORTHO05D001819 2.6e-23 112.8 179 41.9
Lalb_Chr22g0356081 Lupinus albus HOM05D007995 ORTHO05D001819 1.0e-22 110.9 174 38.5
Ca_17116_v3 Cicer arietinum L. HOM05D007995 ORTHO05D001819 1.3e-22 110.5 178 41.6
Medtr6g024180 Medicago truncatula HOM05D007995 ORTHO05D001819 3.8e-22 109.0 174 37.9
Lalb_Chr16g0386251 Lupinus albus HOM05D007995 ORTHO05D001819 1.4e-21 107.1 168 41.1
TPR.G22073 Trifolium pratense HOM05D007995 ORTHO05D001819 4.6e-20 102.1 175 40.6
TPR.G18497 Trifolium pratense HOM05D007995 ORTHO05D001819 1.5e-18 97.1 121 43.8
Lalb_Chr14g0366251 Lupinus albus HOM05D007995 ORTHO05D001819 3.3e-18 95.9 170 34.7
Psat1g087920 Pisum sativum HOM05D007995 ORTHO05D001819 4.3e-18 95.5 176 37.5
Ca_26896_v3 Cicer arietinum L. HOM05D007995 ORTHO05D001819 2.8e-17 92.8 156 39.1
Lalb_Chr14g0366261 Lupinus albus HOM05D007995 ORTHO05D001819 2.8e-17 92.8 172 37.2
ClCG11G011230 Citrullus lanatus HOM05D003146 ORTHO05D001819 1.1e-16 90.9 168 35.7
Lalb_Chr16g0386281 Lupinus albus HOM05D007995 ORTHO05D001819 4.1e-16 89.0 136 41.2
MELO3C019864.2 Cucumis melo HOM05D003146 ORTHO05D001819 5.3e-16 88.6 169 33.7
MELO3C028017.2 Cucumis melo HOM05D003146 ORTHO05D001819 5.3e-16 88.6 170 34.1
Ca_28472_v3 Cicer arietinum L. HOM05D007995 ORTHO05D001819 9.0e-16 87.8 79 59.5
MELO3C030067.2 Cucumis melo HOM05D003146 ORTHO05D001819 1.5e-15 87.0 169 33.1
MELO3C001332.2 Cucumis melo HOM05D003146 ORTHO05D001819 4.5e-15 85.5 169 32.0
MELO3C028122.2 Cucumis melo HOM05D003146 ORTHO05D001819 4.5e-15 85.5 169 32.0
Sed0025500 Sechium edule HOM05D003146 ORTHO05D001819 4.5e-15 85.5 161 33.5
MELO3C000722.2 Cucumis melo HOM05D003146 ORTHO05D001819 5.8e-15 85.1 179 32.4
MELO3C030065.2 Cucumis melo HOM05D003146 ORTHO05D001819 7.6e-15 84.7 169 32.5
Medtr6g024195 Medicago truncatula HOM05D007995 ORTHO05D001819 7.6e-15 84.7 170 38.2
MELO3C019867.2 Cucumis melo HOM05D003146 ORTHO05D001819 1.3e-14 84.0 169 31.4
MELO3C000387.2 Cucumis melo HOM05D003146 ORTHO05D001819 2.2e-14 83.2 169 31.4
CsaV3_UNG225750 Cucumis sativus L. HOM05D003146 ORTHO05D001819 2.2e-14 83.2 169 32.0
MELO3C030077.2 Cucumis melo HOM05D003146 ORTHO05D001819 2.9e-14 82.8 169 32.5
QL04p007223 Quercus lobata HOM05D003146 ORTHO05D001819 3.8e-14 82.4 172 33.7
MELO3C000643.2 Cucumis melo HOM05D003146 ORTHO05D001819 5.0e-14 82.0 169 30.8
MELO3C030064.2 Cucumis melo HOM05D003146 ORTHO05D001819 5.0e-14 82.0 169 32.0
MELO3C032417.2 Cucumis melo HOM05D003146 ORTHO05D001819 5.0e-14 82.0 169 31.4
CsaV3_6G022330 Cucumis sativus L. HOM05D003146 ORTHO05D001819 5.0e-14 82.0 168 30.4
CsaV3_UNG084670 Cucumis sativus L. HOM05D003146 ORTHO05D001819 5.0e-14 82.0 160 31.2
CsaV3_UNG132030 Cucumis sativus L. HOM05D003146 ORTHO05D001819 5.0e-14 82.0 160 31.2
MELO3C025842.2 Cucumis melo HOM05D003146 ORTHO05D001819 6.5e-14 81.6 167 32.3
MELO3C027398.2 Cucumis melo HOM05D003146 ORTHO05D001819 6.5e-14 81.6 177 33.9
MELO3C034829.2 Cucumis melo HOM05D003146 ORTHO05D001819 6.5e-14 81.6 170 33.5
MELO3C034932.2 Cucumis melo HOM05D003146 ORTHO05D001819 6.5e-14 81.6 177 33.9
arahy.Tifrunner.gnm1.ann1.I3WRP4 Arachis hypogaea HOM05D007995 ORTHO05D001819 1.1e-13 80.9 142 37.3
Medtr0155s0060 Medicago truncatula HOM05D007995 ORTHO05D001819 1.1e-13 80.9 153 37.9
Aa31LG10G5720 Aethionema arabicum HOM05D008385 ORTHO05D001819 1.4e-13 80.5 165 37.0
Thhalv10012260m.g Eutrema salsugineum HOM05D008385 ORTHO05D001819 1.4e-13 80.5 173 34.1
Medtr0155s0080 Medicago truncatula HOM05D007995 ORTHO05D001819 1.4e-13 80.5 182 39.0
THA.LOC104802649 Tarenaya hassleriana HOM05D003146 ORTHO05D001819 1.9e-13 80.1 175 34.9
MELO3C019866.2 Cucumis melo HOM05D003146 ORTHO05D001819 5.5e-13 78.6 169 30.2
MELO3C027590.2 Cucumis melo HOM05D003146 ORTHO05D001819 5.5e-13 78.6 163 31.9
MELO3C019860.2 Cucumis melo HOM05D003146 ORTHO05D001819 7.2e-13 78.2 169 30.2
MELO3C027265.2 Cucumis melo HOM05D003146 ORTHO05D001819 9.3e-13 77.8 178 33.1
THA.LOC104820282 Tarenaya hassleriana HOM05D003146 ORTHO05D001819 9.3e-13 77.8 166 32.5
THA.LOC104816708 Tarenaya hassleriana HOM05D003146 ORTHO05D001819 1.2e-12 77.4 166 31.9
CsaV3_2G000020 Cucumis sativus L. HOM05D003146 ORTHO05D001819 1.6e-12 77.0 177 32.8
THA.LOC104808963 Tarenaya hassleriana HOM05D003146 ORTHO05D001819 1.6e-12 77.0 166 33.7
ClCG09G008860 Citrullus lanatus HOM05D003146 ORTHO05D001819 2.1e-12 76.6 168 31.5
Medtr6g023895 Medicago truncatula HOM05D007995 ORTHO05D001819 2.1e-12 76.6 82 51.2
Sed0022729 Sechium edule HOM05D003146 ORTHO05D001819 2.1e-12 76.6 158 32.3
ClCG06G004590 Citrullus lanatus HOM05D003146 ORTHO05D001819 4.6e-12 75.5 162 32.7
Medtr6g024050 Medicago truncatula HOM05D007995 ORTHO05D001819 4.6e-12 75.5 175 34.9
THA.LOC104803096 Tarenaya hassleriana HOM05D003146 ORTHO05D001819 4.6e-12 75.5 170 32.4
MELO3C034867.2 Cucumis melo HOM05D003146 ORTHO05D001819 6.1e-12 75.1 169 29.6
CsaV3_4G038000 Cucumis sativus L. HOM05D003146 ORTHO05D001819 6.1e-12 75.1 163 30.7
CsaV3_6G023780 Cucumis sativus L. HOM05D003146 ORTHO05D001819 6.1e-12 75.1 163 30.7
CsaV3_UNG007100 Cucumis sativus L. HOM05D003146 ORTHO05D001819 6.1e-12 75.1 163 30.7
CsaV3_UNG217460 Cucumis sativus L. HOM05D003146 ORTHO05D001819 6.1e-12 75.1 163 30.7
CsaV3_UNG235420 Cucumis sativus L. HOM05D003146 ORTHO05D001819 6.1e-12 75.1 163 30.7
MELO3C027585.2 Cucumis melo HOM05D003146 ORTHO05D001819 1.0e-11 74.3 178 32.0
MELO3C030075.2 Cucumis melo HOM05D003146 ORTHO05D001819 1.0e-11 74.3 146 31.5
MELO3C035196.2 Cucumis melo HOM05D003146 ORTHO05D001819 1.0e-11 74.3 183 30.6
THA.LOC104817105 Tarenaya hassleriana HOM05D003146 ORTHO05D001819 1.0e-11 74.3 166 30.7
MELO3C027828.2 Cucumis melo HOM05D003146 ORTHO05D001819 1.3e-11 73.9 167 31.7
THA.LOC104802648 Tarenaya hassleriana HOM05D003146 ORTHO05D001819 1.3e-11 73.9 172 32.6
CsaV3_6G026320 Cucumis sativus L. HOM05D003146 ORTHO05D001819 3.0e-11 72.8 163 30.1
CsaV3_6G026340 Cucumis sativus L. HOM05D003146 ORTHO05D001819 3.0e-11 72.8 163 30.1
CsaV3_6G027350 Cucumis sativus L. HOM05D003146 ORTHO05D001819 3.0e-11 72.8 163 30.1
THA.LOC104825373 Tarenaya hassleriana HOM05D003146 ORTHO05D001819 3.9e-11 72.4 166 30.1
Medtr6g024085 Medicago truncatula HOM05D007995 ORTHO05D001819 5.1e-11 72.0 179 34.1
AT1G48020 Arabidopsis thaliana HOM05D003146 ORTHO05D001819 8.7e-11 71.2 166 28.3
Carub.0001s3713 Capsella rubella HOM05D003146 ORTHO05D001819 8.7e-11 71.2 166 27.7
MELO3C032509.2 Cucumis melo HOM05D003146 ORTHO05D001819 8.7e-11 71.2 169 28.4
Medtr6g024060 Medicago truncatula HOM05D007995 ORTHO05D001819 8.7e-11 71.2 175 33.7
Medtr6g024075 Medicago truncatula HOM05D007995 ORTHO05D001819 8.7e-11 71.2 175 33.7
QL06p013378 Quercus lobata HOM05D003146 ORTHO05D001819 8.7e-11 71.2 158 32.3
MELO3C027044.2 Cucumis melo HOM05D003146 ORTHO05D001819 1.1e-10 70.9 169 28.4
CAN.G338.39 Capsicum annuum HOM05D003146 ORTHO05D001819 1.5e-10 70.5 171 29.8
AL1G54540 Arabidopsis lyrata HOM05D003146 ORTHO05D001819 1.9e-10 70.1 166 28.3
Medtr6g025520 Medicago truncatula HOM05D007995 ORTHO05D001819 1.9e-10 70.1 175 33.1
Medtr6g024170 Medicago truncatula HOM05D007995 ORTHO05D001819 3.3e-10 69.3 179 31.3
MELO3C019686.2 Cucumis melo HOM05D003146 ORTHO05D001819 7.4e-10 68.2 171 29.2
BcaB04g20850 Brassica carinata HOM05D003146 ORTHO05D001819 1.6e-09 67.0 160 28.1
MELO3C001272.2 Cucumis melo HOM05D003146 ORTHO05D001819 1.6e-09 67.0 134 31.3
CARHR037660 Cardamine hirsuta HOM05D003146 ORTHO05D001819 2.2e-09 66.6 166 26.5
CARHR092490 Cardamine hirsuta HOM05D003146 ORTHO05D001819 2.8e-09 66.2 171 27.5
Solyc03g112180.1 Solanum lycopersicum HOM05D003146 ORTHO05D001819 2.8e-09 66.2 175 29.7
Nitab4.5_0010452g0030 Nicotiana tabacum HOM05D003146 ORTHO05D001819 3.7e-09 65.9 173 31.2
PGSC0003DMG400003833 Solanum tuberosum HOM05D003146 ORTHO05D001819 3.7e-09 65.9 149 28.9
MELO3C027589.2 Cucumis melo HOM05D003146 ORTHO05D001819 6.3e-09 65.1 134 30.6
AL1G54590 Arabidopsis lyrata HOM05D003146 ORTHO05D001819 8.2e-09 64.7 132 30.3
BcaC09g48683 Brassica carinata HOM05D003146 ORTHO05D001819 1.1e-08 64.3 166 30.7
C01p46950 Brassica napus HOM05D003146 ORTHO05D001819 1.1e-08 64.3 166 30.7
C01p46980 Brassica napus HOM05D003146 ORTHO05D001819 1.1e-08 64.3 166 30.7
BolC1t04666H Brassica oleracea HOM05D003146 ORTHO05D001819 1.1e-08 64.3 166 30.7
QL08p052685 Quercus lobata HOM05D003146 ORTHO05D001819 1.1e-08 64.3 174 30.5
QL08p052692 Quercus lobata HOM05D003146 ORTHO05D001819 1.1e-08 64.3 174 30.5
Sopen09g028760 Solanum pennellii HOM05D003146 ORTHO05D001819 1.1e-08 64.3 149 28.9
Aa31LG10G5790 Aethionema arabicum HOM05D003146 ORTHO05D001819 2.4e-08 63.2 171 27.5
Lj1g0000753 Lotus japonicus HOM05D003146 ORTHO05D001819 3.1e-08 62.8 180 32.8
THA.LOC104825839 Tarenaya hassleriana HOM05D008385 ORTHO05D001819 3.1e-08 62.8 172 32.0
Carub.0003s1698 Capsella rubella HOM05D003146 ORTHO05D001819 4.1e-08 62.4 165 27.9
Lalb_Chr14g0366241 Lupinus albus HOM05D007995 ORTHO05D001819 4.1e-08 62.4 89 43.8
AT3G17220 Arabidopsis thaliana HOM05D003146 ORTHO05D001819 5.3e-08 62.0 150 28.7
Medtr4g031690 Medicago truncatula HOM05D007995 ORTHO05D001819 5.3e-08 62.0 146 30.1
AL3G30250 Arabidopsis lyrata HOM05D003146 ORTHO05D001819 6.9e-08 61.6 150 28.7
Thhalv10022367m.g Eutrema salsugineum HOM05D003146 ORTHO05D001819 6.9e-08 61.6 171 26.9
THA.LOC104810183 Tarenaya hassleriana HOM05D008385 ORTHO05D001819 6.9e-08 61.6 172 32.0
THA.LOC104810184 Tarenaya hassleriana HOM05D008385 ORTHO05D001819 6.9e-08 61.6 172 32.0
MELO3C027625.2 Cucumis melo HOM05D003146 ORTHO05D001819 1.5e-07 60.5 122 32.8
Actinidia18487 Actinidia chinensis HOM05D003146 ORTHO05D001819 3.4e-07 59.3 98 34.7
Cc11_g04920 Coffea canephora HOM05D003146 ORTHO05D001819 3.4e-07 59.3 173 27.7
THA.LOC104801632 Tarenaya hassleriana HOM05D003146 ORTHO05D001819 3.4e-07 59.3 172 31.4
Aa31LG10G5710 Aethionema arabicum HOM05D008385 ORTHO05D010806 5.9e-07 58.5 134 34.3
TWI59G0004 Tripterygium wilfordii HOM05D001445 ORTHO05D001261 7.7e-07 58.2 173 27.2
CAN.G338.41 Capsicum annuum HOM05D003146 ORTHO05D001819 1.0e-06 57.8 171 26.3
CsaV3_UNG044260 Cucumis sativus L. HOM05D003146 ORTHO05D001819 1.0e-06 57.8 95 32.6
CsaV3_UNG083670 Cucumis sativus L. HOM05D003146 ORTHO05D001819 1.0e-06 57.8 95 32.6
Rhsim07G0095800 Rhododendron simsii HOM05D003146 ORTHO05D001819 1.0e-06 57.8 155 27.7
Aa31LG8G4190 Aethionema arabicum HOM05D003146 ORTHO05D001819 1.3e-06 57.4 160 25.6
MELO3C028053.2 Cucumis melo HOM05D003146 ORTHO05D001819 1.3e-06 57.4 125 31.2
Ca_30975_v3 Cicer arietinum L. HOM05D007995 ORTHO05D001819 1.7e-06 57.0 110 34.5
Sp3g15430 Schrenkiella parvula HOM05D003146 ORTHO05D001819 3.8e-06 55.8 165 24.8
MELO3C034826.2 Cucumis melo HOM05D003146 ORTHO05D001819 5.0e-06 55.5 88 34.1
Thhalv10027565m.g Eutrema salsugineum HOM05D008385 ORTHO05D010806 8.5e-06 54.7 171 28.1


User provided reference genes

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