Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G3287 Trifolium pratense HOM05D000120 ORTHO05D410881 2.3e-44 181.8 89 100.0
Psat2g183720 Pisum sativum HOM05D000120 ORTHO05D000068 2.6e-11 72.0 40 87.5
TPR.G6683 Trifolium pratense HOM05D000120 ORTHO05D000068 5.7e-11 70.9 40 85.0
Medtr5g010000 Medicago truncatula HOM05D000120 ORTHO05D000068 7.5e-11 70.5 40 85.0
TPR.G6677 Trifolium pratense HOM05D000120 ORTHO05D000068 1.3e-10 69.7 40 80.0
Aqoxy1G00143 Aquilegia oxysepala HOM05D000120 ORTHO05D000068 6.3e-10 67.4 45 73.3
Lalb_Chr16g0377041 Lupinus albus HOM05D000120 ORTHO05D000068 3.1e-09 65.1 40 77.5
Glyma.11G021100 Glycine max HOM05D000120 ORTHO05D000068 4.1e-09 64.7 40 75.0
MD06G1091600 Malus domestica HOM05D000120 ORTHO05D000068 4.1e-09 64.7 40 72.5
Dinv37593 Davidia involucrata HOM05D000120 ORTHO05D000068 9.2e-09 63.5 41 73.2
Phvul.002G160200 Phaseolus vulgaris HOM05D000120 ORTHO05D000068 9.2e-09 63.5 40 75.0
Atru.chr9.2112 Acer truncatum HOM05D000120 ORTHO05D000068 1.6e-08 62.8 40 72.5
Ciclev10023813m.g Citrus clementina HOM05D000120 ORTHO05D000068 1.6e-08 62.8 40 72.5
LjContig00312_ERROPOS870357g0021319 Lotus japonicus HOM05D000120 ORTHO05D000068 1.6e-08 62.8 40 70.0
vmacro13973 Vaccinium macrocarpon HOM05D000120 ORTHO05D000068 1.6e-08 62.8 40 70.0
VMungo1215G1778 Vigna mungo HOM05D000120 ORTHO05D000068 2.0e-08 62.4 40 72.5
Atru.chr9.2111 Acer truncatum HOM05D000120 ORTHO05D000068 4.5e-08 61.2 40 75.0
Actinidia33730 Actinidia chinensis HOM05D000120 ORTHO05D000068 4.5e-08 61.2 41 70.7
Medtr5g009970 Medicago truncatula HOM05D000120 ORTHO05D000068 4.5e-08 61.2 40 72.5
ATR0721G001 Amborella trichopoda HOM05D000120 ORTHO05D000068 5.9e-08 60.8 40 70.0
Cc08_g15280 Coffea canephora HOM05D000120 ORTHO05D000068 5.9e-08 60.8 40 75.0
Lj2C178T4 Lonicera japonica HOM05D000120 ORTHO05D000068 7.8e-08 60.5 40 72.5
Rhsim07G0087500 Rhododendron simsii HOM05D000120 ORTHO05D000068 7.8e-08 60.5 40 67.5
Sc01g0009870 Simmondsia chinensis HOM05D000120 ORTHO05D000068 7.8e-08 60.5 40 67.5
Manes.02G017000 Manihot esculenta HOM05D000120 ORTHO05D000068 1.0e-07 60.1 40 67.5
Haze_08755 Corylus avellana HOM05D000120 ORTHO05D000068 1.7e-07 59.3 40 70.0
Dinv33350 Davidia involucrata HOM05D000120 ORTHO05D000068 1.7e-07 59.3 41 68.3
CARHR230940 Cardamine hirsuta HOM05D000120 ORTHO05D000068 2.3e-07 58.9 40 62.5
Cfa012247 Carpinus fangiana HOM05D000120 ORTHO05D000068 2.3e-07 58.9 40 70.0
Haze_08754 Corylus avellana HOM05D000120 ORTHO05D000068 2.3e-07 58.9 40 70.0
FAN04G2205 Fragaria x ananassa HOM05D000120 ORTHO05D000068 2.3e-07 58.9 40 67.5
Potri.001G098800 Populus trichocarpa HOM05D000120 ORTHO05D000068 2.3e-07 58.9 40 67.5
QL12p031770 Quercus lobata HOM05D000120 ORTHO05D000068 2.9e-07 58.5 40 72.5
GSVIVG01019420001 Vitis vinifera HOM05D000120 ORTHO05D000068 3.9e-07 58.2 40 72.5
FvH4_5g03220 Fragaria vesca HOM05D000120 ORTHO05D000068 5.0e-07 57.8 40 65.0
FAN18G4538 Fragaria x ananassa HOM05D000120 ORTHO05D000068 5.0e-07 57.8 40 65.0
Gohir.A12G233200 Gossypium hirsutum HOM05D000120 ORTHO05D000068 5.0e-07 57.8 40 67.5
Gohir.D12G234100 Gossypium hirsutum HOM05D000120 ORTHO05D000068 5.0e-07 57.8 40 67.5
Gorai.008G250400 Gossypium raimondii HOM05D000120 ORTHO05D000068 5.0e-07 57.8 40 67.5
PSO384G4148 Papaver somniferum HOM05D000120 ORTHO05D000068 5.0e-07 57.8 40 70.0
Sabra01G0074100 Salix brachista HOM05D000120 ORTHO05D000068 5.0e-07 57.8 40 65.0
Actinidia27363 Actinidia chinensis HOM05D000120 ORTHO05D000068 6.6e-07 57.4 40 67.5
AL7G29850 Arabidopsis lyrata HOM05D000120 ORTHO05D000068 6.6e-07 57.4 40 65.0
AT4G23560 Arabidopsis thaliana HOM05D000120 ORTHO05D000068 6.6e-07 57.4 40 65.0
Prupe.5G106800 Prunus persica HOM05D000120 ORTHO05D000068 6.6e-07 57.4 40 67.5
Thhalv10025071m.g Eutrema salsugineum HOM05D000120 ORTHO05D000068 8.6e-07 57.0 40 65.0
HanXRQChr06g0166021 Helianthus annuus HOM05D000120 ORTHO05D000068 8.6e-07 57.0 40 62.5
Sp7g21480 Schrenkiella parvula HOM05D000120 ORTHO05D000068 8.6e-07 57.0 40 62.5
BcaNung03176 Brassica carinata HOM05D000120 ORTHO05D000068 1.1e-06 56.6 40 62.5
A03p54510 Brassica napus HOM05D000120 ORTHO05D000068 1.1e-06 56.6 40 62.5
C07p52860 Brassica napus HOM05D000120 ORTHO05D000068 1.1e-06 56.6 40 62.5
BolC7t45785H Brassica oleracea HOM05D000120 ORTHO05D000068 1.1e-06 56.6 40 62.5
BraA03t14515Z Brassica rapa HOM05D000120 ORTHO05D000068 1.1e-06 56.6 40 62.5
Thecc.03G286800 Theobroma cacao HOM05D000120 ORTHO05D000068 1.1e-06 56.6 40 65.0
TWI81G0667 Tripterygium wilfordii HOM05D000120 ORTHO05D000068 1.1e-06 56.6 39 64.1
Zm00001eb042070 Zea mays HOM05D000120 ORTHO05D000068 1.1e-06 56.6 45 55.6
Cpa.g.sc180.8 Carica papaya HOM05D000120 ORTHO05D000068 1.5e-06 56.2 40 67.5
PSO250G0047 Papaver somniferum HOM05D000120 ORTHO05D000068 1.5e-06 56.2 40 67.5
TAR374G1431 Trochodendron aralioides HOM05D000120 ORTHO05D000068 1.5e-06 56.2 36 75.0
BcaNung01066 Brassica carinata HOM05D000120 ORTHO05D000068 1.9e-06 55.8 40 62.5
TAR374G1131 Trochodendron aralioides HOM05D000120 ORTHO05D000068 1.9e-06 55.8 40 70.0
BcaC06g35149 Brassica carinata HOM05D000120 ORTHO05D000068 2.5e-06 55.5 40 62.5
BcaC06g35154 Brassica carinata HOM05D000120 ORTHO05D000068 2.5e-06 55.5 40 62.5
BolC7t42441H Brassica oleracea HOM05D000120 ORTHO05D000068 2.5e-06 55.5 40 62.5
BolC7t42447H Brassica oleracea HOM05D000120 ORTHO05D000068 2.5e-06 55.5 40 62.5
BolC7t42448H Brassica oleracea HOM05D000120 ORTHO05D000068 2.5e-06 55.5 40 62.5
CiPaw.11G129600 Carya illinoinensis HOM05D000120 ORTHO05D000068 2.5e-06 55.5 40 65.0
Migut.A00717 Erythranthe guttata HOM05D000120 ORTHO05D000068 2.5e-06 55.5 40 62.5
Lsat_1_v5_gn_3_8480 Lactuca sativa HOM05D000120 ORTHO05D000068 2.5e-06 55.5 40 60.0
RcHm_v2.0_Chr7g0196541 Rosa chinensis HOM05D000120 ORTHO05D000068 2.5e-06 55.5 45 55.6
BcaC09g50976 Brassica carinata HOM05D000120 ORTHO05D000068 3.3e-06 55.1 40 60.0
C01p18540 Brassica napus HOM05D000120 ORTHO05D000068 3.3e-06 55.1 40 60.0
BolC1t01779H Brassica oleracea HOM05D000120 ORTHO05D000068 3.3e-06 55.1 40 60.0
Carub.0007s1777 Capsella rubella HOM05D000120 ORTHO05D000068 3.3e-06 55.1 40 62.5
FAN13G1827 Fragaria x ananassa HOM05D000120 ORTHO05D000068 3.3e-06 55.1 40 62.5
A01p14850 Brassica napus HOM05D000120 ORTHO05D000068 4.3e-06 54.7 40 60.0
BraA01t01427Z Brassica rapa HOM05D000120 ORTHO05D000068 4.3e-06 54.7 40 60.0
MELO3C005716.2 Cucumis melo HOM05D000120 ORTHO05D000068 4.3e-06 54.7 40 57.5
AT4G09740 Arabidopsis thaliana HOM05D000120 ORTHO05D000068 5.6e-06 54.3 40 57.5
COL.COLO4_08359 Corchorus olitorius HOM05D000120 ORTHO05D000068 5.6e-06 54.3 40 62.5
SGA_v2.0_scaffold173G39135 Striga asiatica HOM05D000120 ORTHO05D000068 5.6e-06 54.3 40 62.5
CAN.G532.45 Capsicum annuum HOM05D000120 ORTHO05D000068 9.5e-06 53.5 40 60.0
Duzib068G0747 Durio zibethinus HOM05D000120 ORTHO05D000068 9.5e-06 53.5 40 62.5


User provided reference genes

Program Settings