Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G32858 Trifolium pratense HOM05D013708 ORTHO05D003197 6.7e-125 451.1 291 100.0
TPR.G26385 Trifolium pratense HOM05D013708 ORTHO05D003197 3.2e-79 299.3 443 55.3
Medtr1g025620 Medicago truncatula HOM05D013708 ORTHO05D003197 3.7e-59 232.6 359 53.8
Medtr1g034990 Medicago truncatula HOM05D013708 ORTHO05D003197 1.6e-57 227.3 303 56.4
Ca_13423_v3 Cicer arietinum L. HOM05D013708 ORTHO05D003197 8.3e-43 178.3 334 47.6
Ca_13439_v3 Cicer arietinum L. HOM05D013708 ORTHO05D003197 8.3e-43 178.3 334 47.6
Lj5g0025072 Lotus japonicus HOM05D004095 ORTHO05D003197 5.1e-40 169.1 314 47.5
Psat6g003360 Pisum sativum HOM05D013708 ORTHO05D003197 1.0e-32 144.8 535 33.3
Lalb_Chr08g0246191 Lupinus albus HOM05D004095 ORTHO05D003197 1.0e-24 118.2 320 40.3
arahy.Tifrunner.gnm1.ann1.VNIF6J Arachis hypogaea HOM05D004095 ORTHO05D003197 1.1e-21 108.2 321 34.3
arahy.Tifrunner.gnm1.ann1.I59WU7 Arachis hypogaea HOM05D004095 ORTHO05D003197 4.0e-21 106.3 320 35.3
Glyma.17G259300 Glycine max HOM05D013708 ORTHO05D003197 4.0e-21 106.3 79 63.3
Glyma.14G220400 Glycine max HOM05D013708 ORTHO05D003197 1.5e-20 104.4 80 61.2
Phvul.001G004700 Phaseolus vulgaris HOM05D013708 ORTHO05D003197 3.8e-19 99.8 84 57.1
VMungo0647G0628 Vigna mungo HOM05D013708 ORTHO05D003197 5.4e-18 95.9 80 56.2
TWI12G1115 Tripterygium wilfordii HOM05D004095 ORTHO05D003197 8.7e-16 88.6 325 34.5
Peaxi162Scf00860g00422 Petunia axillaris HOM05D004095 ORTHO05D003197 2.1e-14 84.0 311 33.8
Potri.002G019200 Populus trichocarpa HOM05D004095 ORTHO05D003197 3.7e-14 83.2 311 27.3
CSS0032179 Camellia sinensis var. sinensis HOM05D004095 ORTHO05D003197 6.2e-14 82.4 339 33.0
Cc10_g01420 Coffea canephora HOM05D004095 ORTHO05D003197 1.1e-13 81.6 321 30.5
CSS0006390 Camellia sinensis var. sinensis HOM05D004095 ORTHO05D003197 6.9e-13 79.0 327 31.8
MSTRG.22345 Avicennia marina HOM05D004095 ORTHO05D003197 5.8e-12 75.9 320 31.9
Lj4A21T58 Lonicera japonica HOM05D004095 ORTHO05D003197 1.0e-11 75.1 351 33.9
PGR031G2559 Punica granatum HOM05D004095 ORTHO05D003197 1.7e-11 74.3 317 35.6
Manes.18G010907 Manihot esculenta HOM05D004095 ORTHO05D003197 3.8e-11 73.2 326 27.3
Aqoxy5G01820 Aquilegia oxysepala HOM05D004095 ORTHO05D003197 4.9e-11 72.8 233 31.8
CAN.G311.49 Capsicum annuum HOM05D004095 ORTHO05D003197 6.5e-11 72.4 316 31.3
CiPaw.07G146700 Carya illinoinensis HOM05D004095 ORTHO05D003197 6.5e-11 72.4 327 30.6
ClCG08G014140 Citrullus lanatus HOM05D004095 ORTHO05D003197 1.1e-10 71.6 334 33.5
PGSC0003DMG400009946 Solanum tuberosum HOM05D004095 ORTHO05D003197 1.4e-10 71.2 326 31.6
MELO3C011353.2 Cucumis melo HOM05D004095 ORTHO05D003197 3.2e-10 70.1 336 32.4
Nn6g31993 Nelumbo nucifera HOM05D004095 ORTHO05D003197 4.2e-10 69.7 330 32.1
Gohir.A05G185000 Gossypium hirsutum HOM05D004095 ORTHO05D003197 7.1e-10 68.9 312 29.5
Sabra05G0187500 Salix brachista HOM05D004095 ORTHO05D003197 7.1e-10 68.9 229 29.7
Dinv31870 Davidia involucrata HOM05D004095 ORTHO05D003197 9.3e-10 68.6 331 31.7
Duzib093G1456 Durio zibethinus HOM05D004095 ORTHO05D003197 9.3e-10 68.6 315 30.2
Gorai.009G193100 Gossypium raimondii HOM05D004095 ORTHO05D003197 9.3e-10 68.6 309 34.3
TWI36G1615 Tripterygium wilfordii HOM05D004095 ORTHO05D003197 1.2e-09 68.2 242 32.2
CsaV3_2G024280 Cucumis sativus L. HOM05D004095 ORTHO05D003197 2.1e-09 67.4 332 33.1
Hma1.2p1_0023F.1_g015650 Hydrangea macrophylla HOM05D004095 ORTHO05D003197 2.1e-09 67.4 231 30.3
Eucgr.I02328 Eucalyptus grandis HOM05D004095 ORTHO05D003197 2.7e-09 67.0 325 28.9
Sabra02G0015500 Salix brachista HOM05D004095 ORTHO05D003197 4.6e-09 66.2 233 27.5
Sc15g0004790 Simmondsia chinensis HOM05D004095 ORTHO05D003197 7.9e-09 65.5 348 34.8
Oeu061977.1 Olea europaea HOM05D004095 ORTHO05D003197 1.0e-08 65.1 346 31.5
Gohir.D05G187800 Gossypium hirsutum HOM05D004095 ORTHO05D003197 1.8e-08 64.3 312 29.2
Solyc04g081730.3 Solanum lycopersicum HOM05D004095 ORTHO05D003197 1.8e-08 64.3 325 30.5
Potri.005G242300 Populus trichocarpa HOM05D004095 ORTHO05D003197 2.3e-08 63.9 299 26.1
Potri.005G242400 Populus trichocarpa HOM05D004095 ORTHO05D003197 2.3e-08 63.9 319 28.2
Sed0007913 Sechium edule HOM05D004095 ORTHO05D003197 3.0e-08 63.5 310 28.1
Sed0017695 Sechium edule HOM05D004095 ORTHO05D003197 3.0e-08 63.5 310 31.0
Thecc.08G047900 Theobroma cacao HOM05D004095 ORTHO05D003197 3.0e-08 63.5 303 33.0
Sopen04g035350 Solanum pennellii HOM05D004095 ORTHO05D003197 5.1e-08 62.8 321 30.2
TAR376G0784 Trochodendron aralioides HOM05D004095 ORTHO05D003197 2.5e-07 60.5 321 34.0
EL10Ac3g06641 Beta vulgaris HOM05D004095 ORTHO05D003197 3.3e-07 60.1 289 27.3
Gorai.003G007900 Gossypium raimondii HOM05D004095 ORTHO05D003197 7.4e-07 58.9 328 30.5
Oeu026642.1 Olea europaea HOM05D004095 ORTHO05D003197 7.4e-07 58.9 248 29.8
Cpa.g.sc26.299 Carica papaya HOM05D004095 ORTHO05D003197 9.6e-07 58.5 84 35.7
Cfa007004 Carpinus fangiana HOM05D004095 ORTHO05D003197 9.6e-07 58.5 337 30.0
Oeu007365.1 Olea europaea HOM05D004095 ORTHO05D003197 1.6e-06 57.8 247 28.7
Duzib264G0091 Durio zibethinus HOM05D004095 ORTHO05D003197 2.1e-06 57.4 325 31.4
CiPaw.08G067700 Carya illinoinensis HOM05D004095 ORTHO05D003197 2.8e-06 57.0 319 29.5
unitig_749.g13901 Utricularia gibba HOM05D004095 ORTHO05D003197 2.8e-06 57.0 319 28.2
TAR381G0731 Trochodendron aralioides HOM05D004095 ORTHO05D003197 3.7e-06 56.6 333 27.9
Ciclev10002009m.g Citrus clementina HOM05D004095 ORTHO05D003197 4.8e-06 56.2 228 29.4
Haze_22667 Corylus avellana HOM05D004095 ORTHO05D003197 4.8e-06 56.2 231 27.3
MSTRG.25264 Avicennia marina HOM05D004095 ORTHO05D003197 8.2e-06 55.5 86 39.5
unitig_0.g2088 Utricularia gibba HOM05D004095 ORTHO05D003197 8.2e-06 55.5 55 45.5


User provided reference genes

Program Settings