Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G32851 Trifolium pratense HOM05D000461 ORTHO05D009042 1.2e-135 486.5 247 100.0
Psat5g246400 Pisum sativum HOM05D000461 ORTHO05D009042 8.8e-110 400.6 251 82.5
Medtr2g080290 Medicago truncatula HOM05D000461 ORTHO05D009042 2.8e-108 395.6 247 81.0
Ca_29614_v3 Cicer arietinum L. HOM05D000461 ORTHO05D009042 1.2e-98 363.6 253 73.9
Glyma.13G281300 Glycine max HOM05D000461 ORTHO05D009042 3.6e-95 352.1 249 75.1
Glyma.12G220000 Glycine max HOM05D000461 ORTHO05D009042 2.0e-93 346.3 249 75.5
Lalb_Chr25g0286691 Lupinus albus HOM05D000461 ORTHO05D009042 5.7e-93 344.7 249 71.9
Phvul.005G086500 Phaseolus vulgaris HOM05D000461 ORTHO05D009042 2.2e-92 342.8 251 73.7
Lalb_Chr01g0017011 Lupinus albus HOM05D000461 ORTHO05D009042 1.1e-91 340.5 249 71.5
arahy.Tifrunner.gnm1.ann1.20QRXD Arachis hypogaea HOM05D000461 ORTHO05D009042 2.9e-81 305.8 238 69.7
Lj3g0027305 Lotus japonicus HOM05D000461 ORTHO05D009042 2.5e-80 302.8 235 71.1
arahy.Tifrunner.gnm1.ann1.IDBP1F Arachis hypogaea HOM05D000461 ORTHO05D009042 4.2e-80 302.0 239 69.9
QL08p018706 Quercus lobata HOM05D000461 ORTHO05D009042 2.4e-75 286.2 252 61.9
Cfa020516 Carpinus fangiana HOM05D000461 ORTHO05D009768 2.0e-74 283.1 224 65.6
QL93p2023_0091 Quercus lobata HOM05D000461 ORTHO05D009042 2.7e-74 282.7 252 61.1
CiPaw.11G175500 Carya illinoinensis HOM05D000461 ORTHO05D009042 5.9e-74 281.6 251 62.5
Manes.03G116000 Manihot esculenta HOM05D000461 ORTHO05D009042 1.3e-68 263.8 259 60.2
Dinv08335 Davidia involucrata HOM05D000461 ORTHO05D009042 4.9e-68 261.9 258 55.8
Dinv22369 Davidia involucrata HOM05D000461 ORTHO05D009042 1.4e-67 260.4 261 58.6
CSS0025788 Camellia sinensis var. sinensis HOM05D000461 ORTHO05D009042 5.4e-67 258.5 257 54.5
Prupe.4G189000 Prunus persica HOM05D000461 ORTHO05D009042 3.0e-65 252.7 251 56.6
Nitab4.5_0000297g0040 Nicotiana tabacum HOM05D000461 ORTHO05D009042 3.9e-65 252.3 268 55.2
Ciclev10009303m.g Citrus clementina HOM05D000461 ORTHO05D009042 5.0e-65 251.9 250 59.6
Eucgr.F03352 Eucalyptus grandis HOM05D000461 ORTHO05D009042 1.1e-64 250.8 211 62.6
Hma1.2p1_1003F.1_g246730 Hydrangea macrophylla HOM05D000461 ORTHO05D009042 1.1e-64 250.8 220 63.2
Nn1g03924 Nelumbo nucifera HOM05D000461 ORTHO05D009042 2.5e-64 249.6 259 57.1
TWI39G0508 Tripterygium wilfordii HOM05D000461 ORTHO05D009042 5.6e-64 248.4 249 57.0
Cpa.g.sc80.106 Carica papaya HOM05D000461 ORTHO05D009042 1.6e-63 246.9 179 72.1
Thecc.07G072900 Theobroma cacao HOM05D000461 ORTHO05D009042 4.7e-63 245.4 254 55.1
CANSAT11G1238 Cannabis sativa HOM05D000461 ORTHO05D009042 8.1e-63 244.6 256 55.5
Atru.chr2.2831 Acer truncatum HOM05D000461 ORTHO05D009042 1.4e-62 243.8 254 54.3
Ah.04g164980 Amaranthus hybridus HOM05D000461 ORTHO05D009042 1.8e-62 243.4 197 60.9
ClCG10G006570 Citrullus lanatus HOM05D000461 ORTHO05D009042 2.3e-62 243.0 245 60.0
Duzib213G0849 Durio zibethinus HOM05D000461 ORTHO05D009042 5.2e-62 241.9 257 55.3
Nitab4.5_0002565g0040 Nicotiana tabacum HOM05D000461 ORTHO05D009042 1.2e-61 240.7 238 58.4
Solyc07g063530.3 Solanum lycopersicum HOM05D000461 ORTHO05D009042 9.8e-61 237.7 260 50.0
MD11G1238100 Malus domestica HOM05D000461 ORTHO05D009042 1.3e-60 237.3 259 54.8
Potri.001G405800 Populus trichocarpa HOM05D000461 ORTHO05D009042 2.9e-60 236.1 257 54.1
COL.COLO4_09469 Corchorus olitorius HOM05D000461 ORTHO05D009768 1.9e-59 233.4 208 62.5
FAN11G0265 Fragaria x ananassa HOM05D000461 ORTHO05D009042 1.9e-59 233.4 221 57.9
PGR031G2091 Punica granatum HOM05D000461 ORTHO05D009042 2.4e-59 233.0 182 65.9
Rhsim04G0018200 Rhododendron simsii HOM05D000461 ORTHO05D009042 2.4e-59 233.0 267 50.2
FAN21G1502 Fragaria x ananassa HOM05D000461 ORTHO05D009042 4.1e-59 232.3 214 57.5
RcHm_v2.0_Chr5g0035191 Rosa chinensis HOM05D000461 ORTHO05D009042 4.1e-59 232.3 252 50.8
Sed0008890 Sechium edule HOM05D000461 ORTHO05D009042 4.1e-59 232.3 244 56.6
THA.LOC104799911 Tarenaya hassleriana HOM05D000461 ORTHO05D009042 4.1e-59 232.3 182 64.3
CsaV3_3G006020 Cucumis sativus L. HOM05D000461 ORTHO05D009042 4.6e-58 228.8 248 54.8
TAR626G1568 Trochodendron aralioides HOM05D000461 ORTHO05D009042 6.0e-58 228.4 259 52.1
BcaC06g32696 Brassica carinata HOM05D000461 ORTHO05D009042 1.0e-57 227.6 206 56.8
FAN16G2536 Fragaria x ananassa HOM05D000461 ORTHO05D009042 2.3e-57 226.5 219 55.7
BolC7t46022H Brassica oleracea HOM05D000461 ORTHO05D009042 3.9e-57 225.7 245 52.2
Cc05_g12620 Coffea canephora HOM05D000461 ORTHO05D009042 5.1e-57 225.3 259 52.9
Sabra16G0269500 Salix brachista HOM05D000461 ORTHO05D009042 5.1e-57 225.3 283 48.8
Thhalv10026109m.g Eutrema salsugineum HOM05D000461 ORTHO05D009042 6.6e-57 224.9 244 50.8
C07p55420 Brassica napus HOM05D000461 ORTHO05D009042 1.5e-56 223.8 206 55.8
Sp7g25320 Schrenkiella parvula HOM05D000461 ORTHO05D009042 1.9e-56 223.4 244 51.6
MD03G1219800 Malus domestica HOM05D000461 ORTHO05D009042 2.5e-56 223.0 146 69.9
Sabra16G0267700 Salix brachista HOM05D000461 ORTHO05D009042 2.5e-56 223.0 284 48.9
Carub.0007s1348 Capsella rubella HOM05D000461 ORTHO05D009042 3.3e-56 222.6 206 56.8
Sopen07g031710 Solanum pennellii HOM05D000461 ORTHO05D009042 4.3e-56 222.2 170 63.5
A03p57230 Brassica napus HOM05D000461 ORTHO05D009042 5.6e-56 221.9 206 56.3
BraA03t14789Z Brassica rapa HOM05D000461 ORTHO05D009042 5.6e-56 221.9 206 56.3
Migut.M00872 Erythranthe guttata HOM05D000461 ORTHO05D009042 7.3e-56 221.5 231 57.1
MSTRG.15210 Avicennia marina HOM05D000461 ORTHO05D009042 9.5e-56 221.1 262 53.1
AT4G27390 Arabidopsis thaliana HOM05D000461 ORTHO05D009042 3.6e-55 219.2 240 50.8
GSVIVG01014422001 Vitis vinifera HOM05D000461 ORTHO05D009042 3.6e-55 219.2 147 70.7
CARHR235060 Cardamine hirsuta HOM05D000461 ORTHO05D009042 4.7e-55 218.8 241 50.6
Sc03g0009630 Simmondsia chinensis HOM05D000461 ORTHO05D009042 1.1e-54 217.6 196 56.6
Gohir.A01G068300 Gossypium hirsutum HOM05D000461 ORTHO05D009042 1.4e-54 217.2 258 50.0
Lsat_1_v5_gn_7_106400 Lactuca sativa HOM05D000461 ORTHO05D009042 6.8e-54 214.9 180 62.8
Aa31LG5G10130 Aethionema arabicum HOM05D000461 ORTHO05D009042 2.6e-53 213.0 183 61.7
Aqoxy1G02771 Aquilegia oxysepala HOM05D000461 ORTHO05D009042 2.6e-53 213.0 218 55.0
AL7G25410 Arabidopsis lyrata HOM05D000461 ORTHO05D009042 2.6e-53 213.0 240 51.2
Gohir.D01G055600 Gossypium hirsutum HOM05D000461 ORTHO05D009042 2.6e-53 213.0 146 67.8
CDE05G1014 Ceratophyllum demersum HOM05D000461 ORTHO05D009042 5.8e-53 211.8 198 57.6
Peaxi162Scf01216g00058 Petunia axillaris HOM05D000461 ORTHO05D009042 2.2e-52 209.9 232 53.0
SGA_v2.0_scaffold73G24312 Striga asiatica HOM05D000461 ORTHO05D009042 3.7e-52 209.1 259 51.7
PSO210G3087 Papaver somniferum HOM05D000461 ORTHO05D009042 4.9e-52 208.8 252 49.2
Gorai.002G075700 Gossypium raimondii HOM05D000461 ORTHO05D009042 6.4e-52 208.4 264 49.6
Actinidia25643 Actinidia chinensis HOM05D000461 ORTHO05D009042 1.6e-50 203.8 188 55.9
DCAR_013076 Daucus carota HOM05D000461 ORTHO05D009768 2.1e-50 203.4 188 56.4
PSO832G2223 Papaver somniferum HOM05D000461 ORTHO05D009042 3.5e-50 202.6 207 55.1
Actinidia18752 Actinidia chinensis HOM05D000461 ORTHO05D009042 3.9e-49 199.1 225 49.3
HanXRQChr11g0330871 Helianthus annuus HOM05D000461 ORTHO05D009042 2.5e-48 196.4 232 52.6
EL10Ac4g08079 Beta vulgaris HOM05D000461 ORTHO05D009042 3.6e-47 192.6 318 40.6
FvH4_3g20860 Fragaria vesca HOM05D000461 ORTHO05D009042 1.8e-46 190.3 168 60.7
Oeu005436.1 Olea europaea HOM05D000461 ORTHO05D009042 2.4e-46 189.9 125 72.0
vmacro09553 Vaccinium macrocarpon HOM05D000461 ORTHO05D009042 4.4e-45 185.7 355 38.6
ECA236G1699 Erigeron canadensis HOM05D003383 ORTHO05D003890 2.2e-44 183.3 142 62.7
VMungo1080G0679 Vigna mungo HOM05D000461 ORTHO05D009042 2.2e-44 183.3 168 60.1
AUR62029322 Chenopodium quinoa HOM05D000461 ORTHO05D009042 3.0e-41 172.9 182 52.7
Haze_09518 Corylus avellana HOM05D000461 ORTHO05D009042 3.0e-41 172.9 280 43.9
AUR62015609 Chenopodium quinoa HOM05D000461 ORTHO05D009042 8.7e-41 171.4 220 49.5
Actinidia35273 Actinidia chinensis HOM05D000461 ORTHO05D009042 6.2e-39 165.2 258 43.4
Zm00001eb352790 Zea mays HOM05D000461 ORTHO05D009042 6.9e-38 161.8 199 42.7
HPP92_001809 Vanilla planifolia HOM05D000461 ORTHO05D009042 1.2e-37 161.0 125 60.0
Os05g0502500 Oryza sativa ssp. japonica HOM05D000461 ORTHO05D009042 2.0e-37 160.2 196 48.5
Hund28424 Selenicereus undatus HOM05D000461 ORTHO05D009042 3.4e-37 159.5 209 46.9
Hund28429 Selenicereus undatus HOM05D000461 ORTHO05D009042 3.4e-37 159.5 209 46.9
MELO3C016549.2 Cucumis melo HOM05D000461 ORTHO05D009042 2.9e-36 156.4 178 50.0
CSS0035681 Camellia sinensis var. sinensis HOM05D000461 ORTHO05D009042 6.0e-34 148.7 175 53.1
PGSC0003DMG400019287 Solanum tuberosum HOM05D000461 ORTHO05D009042 5.1e-33 145.6 105 66.7
Mapoly0059s0039 Marchantia polymorpha HOM05D000461 ORTHO05D009042 6.6e-33 145.2 161 44.1
RcHm_v2.0_Chr5g0035211 Rosa chinensis HOM05D000461 ORTHO05D009042 7.3e-32 141.7 109 59.6
SMO347G0332 Selaginella moellendorffii HOM05D000461 ORTHO05D009042 3.1e-30 136.3 167 41.3
Manes.15G162800 Manihot esculenta HOM05D000461 ORTHO05D009042 2.4e-27 126.7 86 70.9
CBR_g3118 Chara braunii HOM05D000461 ORTHO05D009042 4.6e-26 122.5 150 42.7
Hma1.2p1_1003F.1_g246740 Hydrangea macrophylla HOM05D000461 ORTHO05D009042 1.0e-25 121.3 82 69.5
Pp3c5_7600 Physcomitrium patens HOM05D000461 ORTHO05D009042 6.7e-25 118.6 162 40.1
ATR0693G207 Amborella trichopoda HOM05D000461 ORTHO05D009042 9.6e-24 114.8 89 64.0
unitig_85.g27405 Utricularia gibba HOM05D000461 ORTHO05D009042 1.1e-11 74.7 143 37.8
AagrBONN_evm.TU.Sc2ySwM_117.739 Anthoceros agrestis HOM05D000461 ORTHO05D009042 3.1e-06 56.6 72 40.3


User provided reference genes

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