Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G32688 Trifolium pratense HOM05D007699 ORTHO05D009796 3.4e-33 144.4 74 100.0
Medtr3g084270 Medicago truncatula HOM05D007699 ORTHO05D009796 1.6e-14 82.4 57 75.4
Potri.011G103401 Populus trichocarpa HOM05D007699 ORTHO05D009796 4.6e-14 80.9 38 94.7
TPR.G12299 Trifolium pratense HOM05D007699 ORTHO05D009796 4.6e-14 80.9 55 76.4
Prupe.7G069600 Prunus persica HOM05D007699 ORTHO05D009796 6.0e-14 80.5 49 77.6
TPR.G38695 Trifolium pratense HOM05D000020 ORTHO05D000543 1.0e-13 79.7 61 68.9
Hma1.2p1_0886F.1_g232660 Hydrangea macrophylla HOM05D007699 ORTHO05D009796 1.8e-13 79.0 36 94.4
Hma1.2p1_0886F.1_g232685 Hydrangea macrophylla HOM05D007699 ORTHO05D009796 1.8e-13 79.0 36 94.4
Phvul.001G084100 Phaseolus vulgaris HOM05D007699 ORTHO05D009796 3.0e-13 78.2 36 94.4
Phvul.008G062500 Phaseolus vulgaris HOM05D007699 ORTHO05D009796 3.9e-13 77.8 36 94.4
A05p18230 Brassica napus HOM05D007699 ORTHO05D009796 5.1e-13 77.4 56 71.4
C03p91420 Brassica napus HOM05D007699 ORTHO05D009796 6.7e-13 77.0 50 78.0
FAN18G1300 Fragaria x ananassa HOM05D005738 ORTHO05D007135 8.7e-13 76.6 36 94.4
FAN18G3749 Fragaria x ananassa HOM05D005738 ORTHO05D007135 8.7e-13 76.6 36 94.4
Nn7g36904 Nelumbo nucifera HOM05D007699 ORTHO05D009796 8.7e-13 76.6 55 69.1
Phvul.001G066700 Phaseolus vulgaris HOM05D007699 ORTHO05D009796 8.7e-13 76.6 58 70.7
Nitab4.5_0005352g0040 Nicotiana tabacum HOM05D007699 ORTHO05D009796 1.1e-12 76.3 44 84.1
Potri.011G103301 Populus trichocarpa HOM05D007699 ORTHO05D009796 1.1e-12 76.3 54 75.9
FvH4_3g13700 Fragaria vesca HOM05D007699 ORTHO05D009796 1.5e-12 75.9 43 83.7
FAN13G3199 Fragaria x ananassa HOM05D007699 ORTHO05D009796 1.5e-12 75.9 41 85.4
Solyc12g056290.2 Solanum lycopersicum HOM05D007699 ORTHO05D009796 1.5e-12 75.9 33 100.0
Sopen12g028800 Solanum pennellii HOM05D007699 ORTHO05D009796 1.5e-12 75.9 33 100.0
CARHR088640 Cardamine hirsuta HOM05D007699 ORTHO05D009796 1.9e-12 75.5 59 67.8
CARHR185520 Cardamine hirsuta HOM05D007699 ORTHO05D009796 1.9e-12 75.5 41 87.8
FAN11G1327 Fragaria x ananassa HOM05D007699 ORTHO05D009796 1.9e-12 75.5 52 76.9
FAN11G3494 Fragaria x ananassa HOM05D007699 ORTHO05D009796 1.9e-12 75.5 43 83.7
EL10Ac6g13623 Beta vulgaris HOM05D007699 ORTHO05D009796 2.5e-12 75.1 37 89.2
EL10Ac6g13683 Beta vulgaris HOM05D007699 ORTHO05D009796 2.5e-12 75.1 44 79.5
Gohir.D06G068332 Gossypium hirsutum HOM05D007699 ORTHO05D009796 2.5e-12 75.1 73 60.3
Prupe.7G080000 Prunus persica HOM05D007699 ORTHO05D009796 2.5e-12 75.1 35 94.3
arahy.Tifrunner.gnm1.ann1.3J1SD9 Arachis hypogaea HOM05D007699 ORTHO05D009796 3.3e-12 74.7 51 72.5
FAN08G2016 Fragaria x ananassa HOM05D007699 ORTHO05D009796 3.3e-12 74.7 49 75.5
arahy.Tifrunner.gnm1.ann1.3C01L3 Arachis hypogaea HOM05D007699 ORTHO05D009796 4.3e-12 74.3 32 100.0
Carub.0003s1340 Capsella rubella HOM05D007699 ORTHO05D009796 4.3e-12 74.3 32 100.0
Migut.J00839 Erythranthe guttata HOM05D007699 ORTHO05D009796 4.3e-12 74.3 32 100.0
Manes.11G145650 Manihot esculenta HOM05D007699 ORTHO05D009796 4.3e-12 74.3 35 94.3
Mapoly0086s0020 Marchantia polymorpha HOM05D007699 ORTHO05D009796 4.3e-12 74.3 32 100.0
Phvul.001G066900 Phaseolus vulgaris HOM05D007699 ORTHO05D009796 4.3e-12 74.3 32 100.0
QL03p053410 Quercus lobata HOM05D007699 ORTHO05D009796 4.3e-12 74.3 32 100.0
EL10Ac6g13624 Beta vulgaris HOM05D007699 ORTHO05D009796 5.6e-12 73.9 46 76.1
Pp3c15_10810 Physcomitrium patens HOM05D007699 ORTHO05D009796 5.6e-12 73.9 45 82.2
Pp3c15_10813 Physcomitrium patens HOM05D007699 ORTHO05D009796 5.6e-12 73.9 45 82.2
Pp3c15_10820 Physcomitrium patens HOM05D007699 ORTHO05D009796 5.6e-12 73.9 45 82.2
EL10Ac6g13349 Beta vulgaris HOM05D007699 ORTHO05D009796 7.4e-12 73.6 58 69.0
Mapoly0020s0143 Marchantia polymorpha HOM05D007699 ORTHO05D009796 1.3e-11 72.8 35 91.4
Pp3c1_6540 Physcomitrium patens HOM05D007699 ORTHO05D009796 1.6e-11 72.4 33 93.9
GSVIVG01037330001 Vitis vinifera HOM05D007699 ORTHO05D009796 1.6e-11 72.4 32 96.9
EL10Ac6g13685 Beta vulgaris HOM05D007699 ORTHO05D009796 2.1e-11 72.0 31 100.0
FAN08G0324 Fragaria x ananassa HOM05D007699 ORTHO05D009796 2.1e-11 72.0 31 100.0
Ah.10g036850 Amaranthus hybridus HOM05D007699 ORTHO05D009796 2.8e-11 71.6 35 91.4
Medtr3g105890 Medicago truncatula HOM05D007699 ORTHO05D009796 3.7e-11 71.2 81 48.1
Ciclev10018283m.g Citrus clementina HOM05D007699 ORTHO05D009796 4.8e-11 70.9 51 72.5
Pp3c21_2000 Physcomitrium patens HOM05D007699 ORTHO05D009796 4.8e-11 70.9 55 69.1
Pp3c21_2022 Physcomitrium patens HOM05D007699 ORTHO05D009796 4.8e-11 70.9 55 69.1
Pp3c10_15080 Physcomitrium patens HOM05D007699 ORTHO05D009796 8.1e-11 70.1 31 96.8
Pp3c10_15084 Physcomitrium patens HOM05D007699 ORTHO05D009796 8.1e-11 70.1 31 96.8
Pp3s1006_30 Physcomitrium patens HOM05D007699 ORTHO05D009796 8.1e-11 70.1 31 96.8
Pp3s638_22 Physcomitrium patens HOM05D007699 ORTHO05D009796 8.1e-11 70.1 31 96.8
Pp3s677_10 Physcomitrium patens HOM05D007699 ORTHO05D009796 8.1e-11 70.1 31 96.8
Pp3s677_11 Physcomitrium patens HOM05D007699 ORTHO05D009796 8.1e-11 70.1 31 96.8
EL10Ac6g13684 Beta vulgaris HOM05D007699 ORTHO05D009796 1.1e-10 69.7 30 100.0
Gorai.010G079800 Gossypium raimondii HOM05D007699 ORTHO05D009796 1.4e-10 69.3 73 57.5
Pp3c1_26810 Physcomitrium patens HOM05D007699 ORTHO05D009796 3.1e-10 68.2 31 96.8
Pp3c1_26830 Physcomitrium patens HOM05D007699 ORTHO05D009796 3.1e-10 68.2 31 96.8
Pp3s677_20 Physcomitrium patens HOM05D007699 ORTHO05D009796 3.1e-10 68.2 49 71.4
Phvul.001G090500 Phaseolus vulgaris HOM05D007699 ORTHO05D009796 4.0e-10 67.8 33 90.9
Pp3c24_6960 Physcomitrium patens HOM05D007699 ORTHO05D009796 4.0e-10 67.8 34 85.3
Pp3c24_6961 Physcomitrium patens HOM05D007699 ORTHO05D009796 4.0e-10 67.8 34 85.3
SHI29091 Sapria himalayana HOM05D007699 ORTHO05D009796 4.0e-10 67.8 29 100.0
Medtr3g108610 Medicago truncatula HOM05D007699 ORTHO05D009796 2.0e-09 65.5 29 96.6
CSS0021910 Camellia sinensis var. sinensis HOM05D007699 ORTHO05D009796 2.6e-09 65.1 37 78.4
Glyma.19G099100 Glycine max HOM05D007699 ORTHO05D009796 2.6e-09 65.1 39 74.4
Gorai.011G262200 Gossypium raimondii HOM05D007699 ORTHO05D009796 3.4e-09 64.7 28 100.0
Medtr8g461450 Medicago truncatula HOM05D007699 ORTHO05D009796 3.4e-09 64.7 28 100.0
Potri.005G055534 Populus trichocarpa HOM05D007699 ORTHO05D009796 3.4e-09 64.7 28 100.0
Potri.005G055667 Populus trichocarpa HOM05D007699 ORTHO05D009796 3.4e-09 64.7 28 100.0
EL10Ac6g13625 Beta vulgaris HOM05D007699 ORTHO05D009796 5.8e-09 63.9 29 96.6
Gohir.A11G277350 Gossypium hirsutum HOM05D007699 ORTHO05D009796 5.8e-09 63.9 37 78.4
CSS0023756 Camellia sinensis var. sinensis HOM05D007699 ORTHO05D009796 2.2e-08 62.0 27 100.0
Carub.0006s3371 Capsella rubella HOM05D007699 ORTHO05D009796 2.2e-08 62.0 27 100.0
FAN11G3758 Fragaria x ananassa HOM05D007699 ORTHO05D009796 2.2e-08 62.0 27 100.0
FAN18G1871 Fragaria x ananassa HOM05D007699 ORTHO05D009796 2.2e-08 62.0 27 100.0
Gorai.011G262800 Gossypium raimondii HOM05D007699 ORTHO05D009796 2.2e-08 62.0 27 100.0
Phvul.009G076400 Phaseolus vulgaris HOM05D007699 ORTHO05D009796 2.2e-08 62.0 27 100.0
PGSC0003DMG400029597 Solanum tuberosum HOM05D000312 ORTHO05D000221 2.2e-08 62.0 27 100.0
arahy.Tifrunner.gnm1.ann1.C3EWW9 Arachis hypogaea HOM05D007699 ORTHO05D009796 1.1e-07 59.7 27 96.3
Pp3c24_16090 Physcomitrium patens HOM05D007699 ORTHO05D009796 2.5e-07 58.5 32 75.0
Pp3c24_16091 Physcomitrium patens HOM05D007699 ORTHO05D009796 2.5e-07 58.5 32 75.0
Thecc.10G037500 Theobroma cacao HOM05D007699 ORTHO05D009796 2.5e-07 58.5 78 48.7
SHI28974 Sapria himalayana HOM05D007699 ORTHO05D009796 1.2e-06 56.2 31 80.6
EL10Ac6g13621 Beta vulgaris HOM05D007699 ORTHO05D009796 2.1e-06 55.5 62 56.5
Medtr2g101670 Medicago truncatula HOM05D007699 ORTHO05D009796 2.1e-06 55.5 38 68.4
Pp3c27_1930 Physcomitrium patens HOM05D007699 ORTHO05D009796 4.6e-06 54.3 35 65.7


User provided reference genes

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