Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G32679 Trifolium pratense HOM05D003976 ORTHO05D004711 0.0e+00 2027.3 1048 100.0
Medtr8g104855 Medicago truncatula HOM05D003976 ORTHO05D004711 0.0e+00 1907.1 1073 92.2
Medtr5g017640 Medicago truncatula HOM05D003976 ORTHO05D004711 0.0e+00 1900.2 1062 92.4
Ca_00795_v3 Cicer arietinum L. HOM05D003976 ORTHO05D004711 0.0e+00 1876.7 1067 90.6
Lj5g0000763 Lotus japonicus HOM05D003976 ORTHO05D004711 0.0e+00 1840.9 1067 89.4
Glyma.10G207900 Glycine max HOM05D003976 ORTHO05D004711 0.0e+00 1831.6 1065 88.8
Glyma.20G182800 Glycine max HOM05D003976 ORTHO05D004711 0.0e+00 1819.7 1080 87.6
Lalb_Chr06g0170321 Lupinus albus HOM05D003976 ORTHO05D004711 0.0e+00 1808.9 1064 88.3
Phvul.007G098800 Phaseolus vulgaris HOM05D003976 ORTHO05D004711 0.0e+00 1791.2 1063 87.3
VMungo0251G3371 Vigna mungo HOM05D003976 ORTHO05D004711 0.0e+00 1770.4 1066 85.9
Psat7g009400 Pisum sativum HOM05D003976 ORTHO05D004711 0.0e+00 1735.3 974 92.2
Prupe.2G208700 Prunus persica HOM05D003976 ORTHO05D004711 0.0e+00 1641.3 1063 80.4
RcHm_v2.0_Chr1g0362571 Rosa chinensis HOM05D003976 ORTHO05D004711 0.0e+00 1637.1 1067 80.2
MD01G1103100 Malus domestica HOM05D003976 ORTHO05D004711 0.0e+00 1633.2 1066 80.6
FvH4_7g18760 Fragaria vesca HOM05D003976 ORTHO05D004711 0.0e+00 1630.2 1067 80.0
GSVIVG01016219001 Vitis vinifera HOM05D003976 ORTHO05D004711 0.0e+00 1622.4 1085 78.5
TWI63G1397 Tripterygium wilfordii HOM05D003976 ORTHO05D004711 0.0e+00 1619.8 1075 78.0
Duzib114G0598 Durio zibethinus HOM05D003976 ORTHO05D004711 0.0e+00 1606.3 1062 78.9
CANSAT56G1655 Cannabis sativa HOM05D003976 ORTHO05D004711 0.0e+00 1604.7 1070 78.4
Cfa001691 Carpinus fangiana HOM05D003976 ORTHO05D004711 0.0e+00 1603.2 1075 78.0
FAN03G2922 Fragaria x ananassa HOM05D003976 ORTHO05D004711 0.0e+00 1602.0 1067 78.7
Potri.010G227100 Populus trichocarpa HOM05D003976 ORTHO05D004711 0.0e+00 1600.1 1068 79.3
Dinv31232 Davidia involucrata HOM05D003976 ORTHO05D004711 0.0e+00 1598.9 1078 77.4
TWI15G0187 Tripterygium wilfordii HOM05D003976 ORTHO05D004711 0.0e+00 1598.2 1075 77.7
Thecc.10G083800 Theobroma cacao HOM05D003976 ORTHO05D004711 0.0e+00 1597.0 1070 77.9
FAN06G0006 Fragaria x ananassa HOM05D003976 ORTHO05D004711 0.0e+00 1592.4 1067 78.7
CSS0009675 Camellia sinensis var. sinensis HOM05D003976 ORTHO05D004711 0.0e+00 1590.9 1074 77.3
Potri.008G035300 Populus trichocarpa HOM05D003976 ORTHO05D004711 0.0e+00 1590.5 1067 78.3
CiPaw.01G268500 Carya illinoinensis HOM05D003976 ORTHO05D004711 0.0e+00 1589.3 1073 77.4
Atru.chr12.845 Acer truncatum HOM05D003976 ORTHO05D004711 0.0e+00 1585.5 1032 79.7
TAR633G0511 Trochodendron aralioides HOM05D003976 ORTHO05D004711 0.0e+00 1579.3 1079 76.6
MD07G1169800 Malus domestica HOM05D003976 ORTHO05D004711 0.0e+00 1569.3 1023 80.4
Manes.01G054600 Manihot esculenta HOM05D003976 ORTHO05D004711 0.0e+00 1568.1 1068 77.0
PGR044G0607 Punica granatum HOM05D003976 ORTHO05D004711 0.0e+00 1568.1 1076 76.9
Aqoxy1G01141 Aquilegia oxysepala HOM05D003976 ORTHO05D004711 0.0e+00 1567.4 1078 75.8
Nn4g25176 Nelumbo nucifera HOM05D003976 ORTHO05D004711 0.0e+00 1562.7 1077 75.8
CsaV3_6G036710 Cucumis sativus L. HOM05D003976 ORTHO05D004711 0.0e+00 1547.7 1073 75.0
Sed0018764 Sechium edule HOM05D003976 ORTHO05D004711 0.0e+00 1540.4 1073 74.4
Oeu007408.1 Olea europaea HOM05D003976 ORTHO05D004711 0.0e+00 1536.5 1069 74.9
Sopen11g004150 Solanum pennellii HOM05D003976 ORTHO05D004711 0.0e+00 1524.2 1072 74.5
PSO063G6915 Papaver somniferum HOM05D003976 ORTHO05D004711 0.0e+00 1521.9 1067 74.1
Sc06g0007810 Simmondsia chinensis HOM05D003976 ORTHO05D004711 0.0e+00 1521.5 1061 74.6
THA.LOC104826898 Tarenaya hassleriana HOM05D003976 ORTHO05D004711 0.0e+00 1521.1 1064 74.8
Solyc11g008340.3 Solanum lycopersicum HOM05D003976 ORTHO05D004711 0.0e+00 1512.3 1072 74.2
PSO339G0981 Papaver somniferum HOM05D003976 ORTHO05D004711 0.0e+00 1511.5 1069 73.8
Gohir.A05G414300 Gossypium hirsutum HOM05D003976 ORTHO05D004711 0.0e+00 1505.3 1062 74.8
Gohir.D04G001800 Gossypium hirsutum HOM05D003976 ORTHO05D004711 0.0e+00 1501.5 1059 74.7
Gorai.012G002900 Gossypium raimondii HOM05D003976 ORTHO05D004711 0.0e+00 1493.8 1059 74.1
Migut.F01955 Erythranthe guttata HOM05D003976 ORTHO05D004711 0.0e+00 1483.8 1080 72.0
Lj2C20G12 Lonicera japonica HOM05D003976 ORTHO05D004711 0.0e+00 1481.1 1075 72.4
Ciclev10030617m.g Citrus clementina HOM05D003976 ORTHO05D004711 0.0e+00 1476.1 1055 74.8
SalBow4G0398 Salvia bowleyana HOM05D003976 ORTHO05D004711 0.0e+00 1475.7 1088 71.8
MSTRG.27486 Avicennia marina HOM05D003976 ORTHO05D004711 0.0e+00 1471.4 1076 72.0
Sp3g08650 Schrenkiella parvula HOM05D003976 ORTHO05D004711 0.0e+00 1471.4 1064 72.7
Carub.0003s0956 Capsella rubella HOM05D003976 ORTHO05D004711 0.0e+00 1466.8 1062 72.0
Nitab4.5_0001450g0090 Nicotiana tabacum HOM05D003976 ORTHO05D004711 0.0e+00 1459.5 1144 69.3
AT3G10380 Arabidopsis thaliana HOM05D003976 ORTHO05D004711 0.0e+00 1456.0 1062 71.8
CARHR084860 Cardamine hirsuta HOM05D003976 ORTHO05D004711 0.0e+00 1449.1 1062 71.5
ECA238G0457 Erigeron canadensis HOM05D003976 ORTHO05D004711 0.0e+00 1448.7 1058 71.8
BolC5t34435H Brassica oleracea HOM05D003976 ORTHO05D004711 0.0e+00 1447.6 1080 71.1
C05p57780 Brassica napus HOM05D003976 ORTHO05D004711 0.0e+00 1445.3 1080 70.9
MELO3C019825.2 Cucumis melo HOM05D003976 ORTHO05D004711 0.0e+00 1441.8 1091 70.1
A05p38770 Brassica napus HOM05D003976 ORTHO05D004711 0.0e+00 1439.9 1065 71.3
Sabra08G0023600 Salix brachista HOM05D003976 ORTHO05D004711 0.0e+00 1439.5 1132 69.9
AL3G21710 Arabidopsis lyrata HOM05D003976 ORTHO05D004711 0.0e+00 1437.2 1064 71.1
Thhalv10019960m.g Eutrema salsugineum HOM05D003976 ORTHO05D004711 0.0e+00 1431.0 1070 70.6
BolC1t05404H Brassica oleracea HOM05D003976 ORTHO05D004711 0.0e+00 1429.5 1094 69.7
BcaB04g21214 Brassica carinata HOM05D003976 ORTHO05D004711 0.0e+00 1428.3 1062 70.4
C03p44100 Brassica napus HOM05D003976 ORTHO05D004711 0.0e+00 1426.0 1079 69.4
BraA01t04258Z Brassica rapa HOM05D003976 ORTHO05D004711 0.0e+00 1425.2 1094 69.2
DCAR_019085 Daucus carota HOM05D003976 ORTHO05D004711 0.0e+00 1424.8 1080 70.6
Nn3g18724 Nelumbo nucifera HOM05D003976 ORTHO05D004711 0.0e+00 1424.1 1058 70.5
Nitab4.5_0001659g0180 Nicotiana tabacum HOM05D003976 ORTHO05D004711 0.0e+00 1422.9 1094 70.2
A01p41880 Brassica napus HOM05D003976 ORTHO05D004711 0.0e+00 1410.6 1047 71.2
Sabra10G0175200 Salix brachista HOM05D003976 ORTHO05D004711 0.0e+00 1409.4 1173 67.8
HanXRQChr14g0456581 Helianthus annuus HOM05D003976 ORTHO05D004711 0.0e+00 1405.6 1060 69.9
FAN01G1125 Fragaria x ananassa HOM05D003976 ORTHO05D004711 0.0e+00 1404.4 1067 72.3
BolC3t16685H Brassica oleracea HOM05D003976 ORTHO05D004711 0.0e+00 1402.1 1079 68.6
BcaC09g48100 Brassica carinata HOM05D003976 ORTHO05D004711 0.0e+00 1397.9 1047 70.4
HanXRQChr05g0161261 Helianthus annuus HOM05D003976 ORTHO05D004711 0.0e+00 1396.3 1057 69.8
A03p36500 Brassica napus HOM05D003976 ORTHO05D004711 0.0e+00 1394.8 1079 68.5
HanXRQChr14g0455711 Helianthus annuus HOM05D003976 ORTHO05D004711 0.0e+00 1394.8 1061 69.6
arahy.Tifrunner.gnm1.ann1.9SI57B Arachis hypogaea HOM05D003976 ORTHO05D004711 0.0e+00 1394.4 1049 72.8
FAN06G1302 Fragaria x ananassa HOM05D003976 ORTHO05D004711 0.0e+00 1394.4 1097 69.6
MBI18_g27471_MAGBIO Magnolia biondii HOM05D003976 ORTHO05D004711 0.0e+00 1389.4 993 73.8
AUR62023345 Chenopodium quinoa HOM05D003976 ORTHO05D004711 0.0e+00 1377.1 1079 69.6
BcaC05g29471 Brassica carinata HOM05D003976 ORTHO05D004711 0.0e+00 1376.7 1064 69.0
BraA03t12817Z Brassica rapa HOM05D003976 ORTHO05D004711 0.0e+00 1375.5 1079 68.0
AUR62013811 Chenopodium quinoa HOM05D003976 ORTHO05D004711 0.0e+00 1362.8 1102 68.1
Haze_16845 Corylus avellana HOM05D003976 ORTHO05D004711 0.0e+00 1357.0 1151 66.4
Aa31LG3G2960 Aethionema arabicum HOM05D003976 ORTHO05D004711 0.0e+00 1348.6 1070 68.0
ClCG08G007720 Citrullus lanatus HOM05D003976 ORTHO05D004711 0.0e+00 1339.7 1041 69.2
Oeu033874.1 Olea europaea HOM05D003976 ORTHO05D004711 0.0e+00 1335.1 946 73.9
FAN10G1353 Fragaria x ananassa HOM05D003976 ORTHO05D004711 0.0e+00 1328.9 1055 69.7
Lsat_1_v5_gn_2_113061 Lactuca sativa HOM05D003976 ORTHO05D004711 0.0e+00 1318.1 1055 67.5
HPP92_022853 Vanilla planifolia HOM05D003976 ORTHO05D004711 0.0e+00 1307.7 1093 64.8
Os08g0318500 Oryza sativa ssp. japonica HOM05D003976 ORTHO05D004711 0.0e+00 1300.4 1060 64.0
EL10Ac1g00696 Beta vulgaris HOM05D003976 ORTHO05D004711 0.0e+00 1298.1 1163 64.3
FAN10G3044 Fragaria x ananassa HOM05D003976 ORTHO05D004711 0.0e+00 1286.9 1063 67.7
CDE10G1014 Ceratophyllum demersum HOM05D003976 ORTHO05D004711 0.0e+00 1284.6 1011 67.2
Zm00001eb330040 Zea mays HOM05D003976 ORTHO05D004711 0.0e+00 1283.5 1062 63.9
SEGI_27589 Sequoiadendron giganteum HOM05D003976 ORTHO05D004711 0.0e+00 1270.0 1069 63.1
SGA_v2.0_scaffold100G29552 Striga asiatica HOM05D003976 ORTHO05D004711 0.0e+00 1204.9 1255 55.9
Eucgr.K02187 Eucalyptus grandis HOM05D003976 ORTHO05D004711 0.0e+00 1181.0 870 72.4
unitig_46.g18603 Utricularia gibba HOM05D003976 ORTHO05D004711 0.0e+00 1171.8 1054 62.0
Hma1.2p1_0384F.1_g140840 Hydrangea macrophylla HOM05D003976 ORTHO05D004711 0.0e+00 1141.7 738 80.1
ATR0730G009 Amborella trichopoda HOM05D003976 ORTHO05D004711 0.0e+00 1124.4 905 66.5
Gohir.D10G210600 Gossypium hirsutum HOM05D003976 ORTHO05D004711 0.0e+00 1118.6 890 68.0
Gorai.011G236100 Gossypium raimondii HOM05D003976 ORTHO05D004711 1.3e-300 1036.6 955 61.5
Mapoly0170s0008 Marchantia polymorpha HOM05D003976 ORTHO05D004711 5.4e-294 1014.6 1077 52.4
Pp3c16_24260 Physcomitrium patens HOM05D003976 ORTHO05D004711 1.0e-292 1010.4 1093 51.6
QL08p054317 Quercus lobata HOM05D003976 ORTHO05D004711 4.6e-285 984.9 724 72.4
CiPaw.02G172200 Carya illinoinensis HOM05D003976 ORTHO05D004711 2.4e-273 946.0 629 78.7
Pp3c3_21120 Physcomitrium patens HOM05D003976 ORTHO05D004711 3.9e-268 928.7 1086 48.8
Actinidia18607 Actinidia chinensis HOM05D003976 ORTHO05D004711 3.4e-264 915.6 805 63.7
Pp3c12_15420 Physcomitrium patens HOM05D003976 ORTHO05D004711 4.4e-259 898.7 1075 47.7
SMO172G0221 Selaginella moellendorffii HOM05D003976 ORTHO05D004711 3.1e-249 865.9 1045 48.6
Gohir.A10G202400 Gossypium hirsutum HOM05D003976 ORTHO05D004711 2.2e-247 859.8 772 63.1
arahy.Tifrunner.gnm1.ann1.WBL645 Arachis hypogaea HOM05D003976 ORTHO05D004711 1.1e-238 830.9 574 78.2
Peaxi162Scf00145g01215 Petunia axillaris HOM05D003976 ORTHO05D004711 1.1e-214 751.1 515 74.8
COL.COLO4_34215 Corchorus olitorius HOM05D003976 ORTHO05D004711 1.8e-212 743.8 568 70.4
Hund17145 Selenicereus undatus HOM05D003976 ORTHO05D004711 4.1e-209 732.6 708 58.5
BraA05t22668Z Brassica rapa HOM05D003976 ORTHO05D004711 5.4e-209 732.3 558 69.9
COL.COLO4_34214 Corchorus olitorius HOM05D003976 ORTHO05D004711 2.2e-194 683.7 531 70.4
Peaxi162Scf00145g01214 Petunia axillaris HOM05D003976 ORTHO05D004711 1.1e-190 671.4 571 65.7
AagrBONN_evm.TU.Sc2ySwM_228.4637 Anthoceros agrestis HOM05D003976 ORTHO05D004711 1.1e-188 664.8 804 48.5
CBR_g30687 Chara braunii HOM05D003976 ORTHO05D004711 4.0e-188 662.9 1223 36.7
vmacro00386 Vaccinium macrocarpon HOM05D003976 ORTHO05D004711 1.4e-177 627.9 840 48.1
BraA05t22669Z Brassica rapa HOM05D003976 ORTHO05D004711 1.9e-174 617.5 425 75.8
Lalb_Chr21g0313681 Lupinus albus HOM05D003976 ORTHO05D004711 1.1e-161 575.1 346 85.8
CAN.G321.62 Capsicum annuum HOM05D003976 ORTHO05D004711 1.1e-145 521.9 425 67.8
CDE10G0060 Ceratophyllum demersum HOM05D003976 ORTHO05D004711 5.3e-140 503.1 394 66.5
CiPaw.02G172100 Carya illinoinensis HOM05D003976 ORTHO05D004711 1.7e-138 498.0 371 72.5
Lalb_Chr21g0313551 Lupinus albus HOM05D003976 ORTHO05D004711 8.0e-128 462.6 280 86.1
Rhsim03G0115800 Rhododendron simsii HOM05D003976 ORTHO05D004711 3.8e-122 443.7 357 67.2
Cpa.g.sc53.132 Carica papaya HOM05D003976 ORTHO05D004711 1.5e-118 431.8 318 72.6
vmacro00383 Vaccinium macrocarpon HOM05D003976 ORTHO05D004711 5.4e-116 423.3 364 64.3
Cpa.g.sc53.134 Carica papaya HOM05D003976 ORTHO05D004711 4.5e-115 420.2 344 67.7
QL08p054329 Quercus lobata HOM05D003976 ORTHO05D004711 1.6e-112 411.8 269 79.9
Cc02_g10920 Coffea canephora HOM05D003976 ORTHO05D004711 4.9e-85 320.5 226 74.3
CDE10G0443 Ceratophyllum demersum HOM05D003976 ORTHO05D004711 1.2e-80 305.8 354 50.8
VMungo0720G2709 Vigna mungo HOM05D003976 ORTHO05D004711 3.6e-72 277.7 193 77.7
BcaNung07314 Brassica carinata HOM05D003976 ORTHO05D004711 4.5e-70 270.8 178 77.5
CDE10G0301 Ceratophyllum demersum HOM05D003976 ORTHO05D004711 7.9e-59 233.4 165 70.9
HPP92_026132 Vanilla planifolia HOM05D003976 ORTHO05D004711 1.3e-58 232.6 143 79.7
ATR0730G060 Amborella trichopoda HOM05D003976 ORTHO05D004711 2.6e-54 218.4 133 81.2
TPR.G33031 Trifolium pratense HOM05D003976 ORTHO05D004711 4.2e-52 211.1 122 84.4
vmacro00384 Vaccinium macrocarpon HOM05D003976 ORTHO05D004711 1.2e-51 209.5 108 93.5
PSO478G0690 Papaver somniferum HOM05D003976 ORTHO05D004711 5.7e-49 200.7 137 78.8
SEGI_25267 Sequoiadendron giganteum HOM05D003976 ORTHO05D004711 1.1e-44 186.4 139 66.9
Lj6g0023100 Lotus japonicus HOM05D003976 ORTHO05D004711 6.7e-42 177.2 104 85.6
Lsat_1_v5_gn_4_4660 Lactuca sativa HOM05D003976 ORTHO05D004711 2.0e-38 165.6 169 55.0
Psat7g009440 Pisum sativum HOM05D003976 ORTHO05D004711 2.0e-38 165.6 86 89.5
vmacro00385 Vaccinium macrocarpon HOM05D003976 ORTHO05D004711 1.6e-35 156.0 95 81.1
AL491U10010 Arabidopsis lyrata HOM05D003976 ORTHO05D004711 1.5e-33 149.4 101 73.3
Cc02_g10910 Coffea canephora HOM05D003976 ORTHO05D004711 4.4e-33 147.9 111 70.3
Actinidia18608 Actinidia chinensis HOM05D003976 ORTHO05D004711 1.7e-32 146.0 101 74.3
Gohir.D10G210566 Gossypium hirsutum HOM05D003976 ORTHO05D004711 5.5e-28 131.0 87 70.1
Lsat_1_v5_gn_9_29220 Lactuca sativa HOM05D003976 ORTHO05D006024 5.5e-28 131.0 98 69.4
SHI08886 Sapria himalayana HOM05D000002 ORTHO05D000001 1.4e-26 126.3 92 75.0
CAN.G796.1 Capsicum annuum HOM05D003976 ORTHO05D004711 2.3e-26 125.6 171 46.2
TPR.G28835 Trifolium pratense HOM05D003976 ORTHO05D004711 8.8e-26 123.6 79 73.4
Cre01.g003050 Chlamydomonas reinhardtii HOM05D003976 ORTHO05D004711 1.1e-25 123.2 200 34.5
SHI08885 Sapria himalayana HOM05D000002 ORTHO05D000001 4.8e-24 117.9 79 67.1
Hma1.2p1_0384F.1_g140740 Hydrangea macrophylla HOM05D003976 ORTHO05D004711 6.3e-24 117.5 87 70.1
Cc06_g17220 Coffea canephora HOM05D003976 ORTHO05D004711 3.5e-22 111.7 81 65.4
Lalb_Chr21g0313561 Lupinus albus HOM05D003976 ORTHO05D004711 3.5e-22 111.7 81 72.8
Lalb_Chr21g0313691 Lupinus albus HOM05D003976 ORTHO05D004711 3.5e-22 111.7 81 72.8
Prupe.5G231200 Prunus persica HOM05D003976 ORTHO05D004711 5.2e-18 97.8 99 53.5
Lsat_1_v5_gn_6_63420 Lactuca sativa HOM05D003976 ORTHO05D004711 2.0e-14 85.9 71 60.6
TPR.G6473 Trifolium pratense HOM05D003976 ORTHO05D004711 1.3e-13 83.2 48 87.5
Hma1.2p1_0384F.1_g140760 Hydrangea macrophylla HOM05D003976 ORTHO05D004711 1.7e-13 82.8 49 83.7
vmacro16680 Vaccinium macrocarpon HOM05D002957 ORTHO05D007941 2.9e-13 82.0 61 68.9
vmacro23142 Vaccinium macrocarpon HOM05D002957 ORTHO05D007941 2.9e-13 82.0 61 68.9
Cc03_g09730 Coffea canephora HOM05D003976 ORTHO05D004711 3.6e-11 75.1 56 66.1
Aa31LG6G7350 Aethionema arabicum HOM05D003976 ORTHO05D004711 5.2e-10 71.2 53 66.0
HanXRQChr05g0134171 Helianthus annuus HOM05D003976 ORTHO05D004711 8.8e-10 70.5 52 73.1
MBI18_g27470_MAGBIO Magnolia biondii HOM05D003976 ORTHO05D004711 4.5e-06 58.2 52 48.1


User provided reference genes

Program Settings