Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G32656 Trifolium pratense HOM05D005406 ORTHO05D006599 2.0e-198 695.7 356 100.0
Ca_00193_v3 Cicer arietinum L. HOM05D005406 ORTHO05D006599 1.1e-145 520.4 293 91.8
Medtr2g010460 Medicago truncatula HOM05D005406 ORTHO05D006599 3.4e-142 508.8 294 90.1
Psat1g212280 Pisum sativum HOM05D005406 ORTHO05D006599 1.7e-141 506.5 293 89.8
Lj6g0016064 Lotus japonicus HOM05D005406 ORTHO05D006599 6.7e-130 468.0 292 83.2
arahy.Tifrunner.gnm1.ann1.SJVP3Q Arachis hypogaea HOM05D005406 ORTHO05D006599 2.6e-121 439.5 299 78.3
Glyma.13G253400 Glycine max HOM05D005406 ORTHO05D006599 9.7e-121 437.6 294 77.6
arahy.Tifrunner.gnm1.ann1.6V09A5 Arachis hypogaea HOM05D005406 ORTHO05D006599 4.8e-120 435.3 299 77.6
Glyma.15G061500 Glycine max HOM05D005406 ORTHO05D006599 4.5e-118 428.7 296 76.4
Duzib132G0847 Durio zibethinus HOM05D005406 ORTHO05D006599 5.0e-117 425.2 302 72.2
VMungo0540G2475 Vigna mungo HOM05D005406 ORTHO05D006599 9.4e-116 421.0 294 72.8
Thecc.02G035200 Theobroma cacao HOM05D005406 ORTHO05D006599 8.0e-115 417.9 290 74.1
Lalb_Chr18g0060221 Lupinus albus HOM05D005406 ORTHO05D006599 1.4e-114 417.2 294 74.8
Phvul.006G198300 Phaseolus vulgaris HOM05D005406 ORTHO05D006599 2.3e-114 416.4 294 72.1
Gohir.A01G179200 Gossypium hirsutum HOM05D005406 ORTHO05D006599 6.7e-114 414.8 295 73.2
Gorai.002G211600 Gossypium raimondii HOM05D005406 ORTHO05D006599 2.0e-113 413.3 295 72.9
Duzib248G0763 Durio zibethinus HOM05D005406 ORTHO05D006599 2.6e-113 412.9 302 71.9
QL11p027148 Quercus lobata HOM05D005406 ORTHO05D006599 3.3e-113 412.5 281 77.6
Gohir.D01G170000 Gossypium hirsutum HOM05D005406 ORTHO05D006599 5.7e-113 411.8 295 72.5
Atru.chr5.2137 Acer truncatum HOM05D005406 ORTHO05D006599 2.4e-111 406.4 289 72.0
Ciclev10028503m.g Citrus clementina HOM05D005406 ORTHO05D006599 4.1e-111 405.6 295 72.2
CiPaw.05G025100 Carya illinoinensis HOM05D005406 ORTHO05D006599 9.1e-111 404.4 307 70.7
Haze_10359 Corylus avellana HOM05D005406 ORTHO05D006599 9.1e-111 404.4 300 71.7
CSS0039463 Camellia sinensis var. sinensis HOM05D005406 ORTHO05D006599 1.6e-110 403.7 280 75.4
COL.COLO4_17837 Corchorus olitorius HOM05D005406 ORTHO05D006599 1.6e-110 403.7 291 72.2
CAN.G504.65 Capsicum annuum HOM05D005406 ORTHO05D006599 2.0e-110 403.3 280 73.9
CSS0000362 Camellia sinensis var. sinensis HOM05D005406 ORTHO05D006599 4.5e-110 402.1 280 75.0
Cfa004762 Carpinus fangiana HOM05D005406 ORTHO05D006599 4.5e-110 402.1 274 75.9
Cpa.g.sc20.64 Carica papaya HOM05D005406 ORTHO05D006599 1.0e-109 401.0 290 71.4
DCAR_021922 Daucus carota HOM05D005406 ORTHO05D006599 1.0e-109 401.0 296 68.9
MD05G1112800 Malus domestica HOM05D005406 ORTHO05D006599 5.5e-108 395.2 296 72.0
CANSAT25G3620 Cannabis sativa HOM05D005406 ORTHO05D006599 7.2e-108 394.8 296 69.3
Oeu014213.1 Olea europaea HOM05D005406 ORTHO05D006599 7.2e-108 394.8 294 71.1
Gorai.008G043000 Gossypium raimondii HOM05D005406 ORTHO05D006599 1.2e-107 394.0 294 69.4
EL10Ac9g22145 Beta vulgaris HOM05D005406 ORTHO05D006599 2.7e-107 392.9 305 66.9
Cc02_g20410 Coffea canephora HOM05D005406 ORTHO05D006599 3.6e-107 392.5 294 69.0
Oeu005736.1 Olea europaea HOM05D005406 ORTHO05D006599 4.7e-107 392.1 298 69.1
RcHm_v2.0_Chr6g0246311 Rosa chinensis HOM05D005406 ORTHO05D006599 1.4e-106 390.6 295 70.5
Prupe.8G157400 Prunus persica HOM05D005406 ORTHO05D006599 1.8e-106 390.2 271 76.0
Potri.009G081500 Populus trichocarpa HOM05D005406 ORTHO05D006599 6.8e-106 388.3 302 67.5
Hma1.2p1_0435F.1_g152460 Hydrangea macrophylla HOM05D005406 ORTHO05D006599 8.8e-106 387.9 306 68.0
TWI14G0527 Tripterygium wilfordii HOM05D005406 ORTHO05D006599 1.5e-105 387.1 284 71.5
Gohir.D12G041200 Gossypium hirsutum HOM05D005406 ORTHO05D006599 2.0e-105 386.7 294 68.4
Hma1.2p1_2001F.1_g310660 Hydrangea macrophylla HOM05D005406 ORTHO05D006599 2.0e-105 386.7 294 70.4
Peaxi162Scf00299g00335 Petunia axillaris HOM05D005406 ORTHO05D006599 2.6e-105 386.3 284 70.4
Nitab4.5_0005609g0080 Nicotiana tabacum HOM05D005406 ORTHO05D006599 7.5e-105 384.8 277 71.8
Migut.B00502 Erythranthe guttata HOM05D005406 ORTHO05D006599 1.3e-104 384.0 282 71.3
MD10G1115400 Malus domestica HOM05D005406 ORTHO05D006599 1.3e-104 384.0 304 69.4
Sopen01g048840 Solanum pennellii HOM05D005406 ORTHO05D006599 1.3e-104 384.0 293 68.3
Aqoxy6G00604 Aquilegia oxysepala HOM05D005406 ORTHO05D006599 1.7e-104 383.6 287 70.4
Nitab4.5_0001477g0200 Nicotiana tabacum HOM05D005406 ORTHO05D006599 1.7e-104 383.6 293 68.3
GSVIVG01036964001 Vitis vinifera HOM05D005406 ORTHO05D006599 1.7e-104 383.6 300 67.7
Gohir.A12G031100 Gossypium hirsutum HOM05D005406 ORTHO05D006599 2.2e-104 383.3 294 68.7
PGR142G0824 Punica granatum HOM05D005406 ORTHO05D006599 2.2e-104 383.3 295 66.8
Hund00407 Selenicereus undatus HOM05D005406 ORTHO05D006599 6.3e-104 381.7 307 66.1
Solyc01g106470.3 Solanum lycopersicum HOM05D005406 ORTHO05D006599 8.3e-104 381.3 280 70.0
FAN24G0505 Fragaria x ananassa HOM05D005406 ORTHO05D006599 1.1e-103 380.9 269 71.4
TAR381G0409 Trochodendron aralioides HOM05D005406 ORTHO05D006599 1.1e-103 380.9 303 68.6
FvH4_2g02400 Fragaria vesca HOM05D005406 ORTHO05D006599 2.4e-103 379.8 269 71.4
FvH4_2g02480 Fragaria vesca HOM05D005406 ORTHO05D006599 2.4e-103 379.8 269 71.4
PGSC0003DMG400005102 Solanum tuberosum HOM05D005406 ORTHO05D006599 2.4e-103 379.8 297 67.0
SalBow6G6486 Salvia bowleyana HOM05D005406 ORTHO05D006599 4.1e-103 379.0 305 67.5
MSTRG.5302 Avicennia marina HOM05D005406 ORTHO05D006599 9.1e-103 377.9 305 65.9
Actinidia28010 Actinidia chinensis HOM05D005406 ORTHO05D006599 1.2e-102 377.5 291 70.1
FAN20G2478 Fragaria x ananassa HOM05D005406 ORTHO05D006599 1.2e-102 377.5 269 71.0
Sabra09G0063200 Salix brachista HOM05D005406 ORTHO05D006599 1.6e-102 377.1 316 63.9
Rhsim05G0094300 Rhododendron simsii HOM05D005406 ORTHO05D006599 4.5e-102 375.6 313 65.2
FAN15G2054 Fragaria x ananassa HOM05D005406 ORTHO05D006599 5.9e-102 375.2 269 71.0
HanXRQChr10g0291291 Helianthus annuus HOM05D005406 ORTHO05D006599 7.7e-102 374.8 303 67.0
Lj9A341G45 Lonicera japonica HOM05D005406 ORTHO05D006599 7.7e-102 374.8 267 71.5
Manes.10G090700 Manihot esculenta HOM05D005406 ORTHO05D006599 1.7e-101 373.6 283 68.9
vmacro19583 Vaccinium macrocarpon HOM05D005406 ORTHO05D006599 5.0e-101 372.1 268 72.8
Manes.07G049000 Manihot esculenta HOM05D005406 ORTHO05D006599 6.5e-101 371.7 310 64.8
Lsat_1_v5_gn_5_110661 Lactuca sativa HOM05D005406 ORTHO05D006599 1.1e-100 370.9 283 70.0
AUR62030902 Chenopodium quinoa HOM05D005406 ORTHO05D006599 1.9e-100 370.2 304 63.5
FAN27G0850 Fragaria x ananassa HOM05D005406 ORTHO05D006599 2.5e-100 369.8 286 67.5
TAR625G1228 Trochodendron aralioides HOM05D005406 ORTHO05D006599 2.5e-100 369.8 306 66.7
Eucgr.I02516 Eucalyptus grandis HOM05D005406 ORTHO05D006599 7.2e-100 368.2 281 69.4
AT5G64510 Arabidopsis thaliana HOM05D005406 ORTHO05D006599 1.6e-99 367.1 296 66.9
SalBow6G6746 Salvia bowleyana HOM05D005406 ORTHO05D006599 2.1e-99 366.7 284 68.0
MSTRG.16653 Avicennia marina HOM05D005406 ORTHO05D006599 2.7e-99 366.3 279 68.1
ECA234G4519 Erigeron canadensis HOM05D005406 ORTHO05D006599 2.7e-99 366.3 275 70.9
PSO541G4550 Papaver somniferum HOM05D005406 ORTHO05D006599 6.1e-99 365.2 302 65.9
PSO675G0725 Papaver somniferum HOM05D005406 ORTHO05D006599 2.3e-98 363.2 299 65.6
AL8G41900 Arabidopsis lyrata HOM05D005406 ORTHO05D006599 4.0e-98 362.5 296 65.9
Aa31LG1G17410 Aethionema arabicum HOM05D005406 ORTHO05D006599 1.2e-97 360.9 303 63.0
Carub.0008s2531 Capsella rubella HOM05D005406 ORTHO05D006599 2.0e-97 360.1 299 65.2
unitig_747.g21249 Utricularia gibba HOM05D005406 ORTHO05D006599 2.2e-96 356.7 281 65.1
CARHR278480 Cardamine hirsuta HOM05D005406 ORTHO05D006599 4.9e-96 355.5 299 63.5
C03p61740 Brassica napus HOM05D005406 ORTHO05D006599 1.1e-95 354.4 303 62.4
BolC3t18435H Brassica oleracea HOM05D005406 ORTHO05D006599 1.1e-95 354.4 303 62.4
THA.LOC104819322 Tarenaya hassleriana HOM05D005406 ORTHO05D006599 1.4e-95 354.0 308 62.3
Thhalv10004273m.g Eutrema salsugineum HOM05D005406 ORTHO05D006599 9.1e-95 351.3 299 63.2
A06p31250 Brassica napus HOM05D005406 ORTHO05D006599 2.0e-94 350.1 309 61.2
Sp2g27590 Schrenkiella parvula HOM05D005406 ORTHO05D006599 3.5e-94 349.4 309 61.5
BraA06t26063Z Brassica rapa HOM05D005406 ORTHO05D006599 7.7e-94 348.2 308 61.4
Sed0011512 Sechium edule HOM05D005406 ORTHO05D006599 8.6e-93 344.7 298 62.4
ClCG02G007430 Citrullus lanatus HOM05D005406 ORTHO05D006599 1.5e-92 344.0 313 62.3
MBI16_g33603_MAGBIO Magnolia biondii HOM05D005406 ORTHO05D006599 1.5e-92 344.0 313 62.3
MBI16_g33605_MAGBIO Magnolia biondii HOM05D005406 ORTHO05D006599 2.5e-92 343.2 313 62.0
Ah.01g024310 Amaranthus hybridus HOM05D005406 ORTHO05D006599 4.2e-92 342.4 270 64.8
Nn1g05945 Nelumbo nucifera HOM05D005406 ORTHO05D006599 5.6e-92 342.0 308 61.4
unitig_699.g19863 Utricularia gibba HOM05D005406 ORTHO05D006599 8.0e-91 338.2 312 59.0
CsaV3_7G007470 Cucumis sativus L. HOM05D005406 ORTHO05D006599 4.0e-90 335.9 312 60.3
Sed0003204 Sechium edule HOM05D005406 ORTHO05D006599 5.2e-90 335.5 291 61.9
MELO3C018554.2 Cucumis melo HOM05D005406 ORTHO05D006599 3.5e-86 322.8 272 64.3
SHI04907 Sapria himalayana HOM05D005406 ORTHO05D006599 4.6e-86 322.4 262 61.8
AUR62027061 Chenopodium quinoa HOM05D005406 ORTHO05D006599 1.9e-84 317.0 307 54.4
ECA236G2632 Erigeron canadensis HOM05D005406 ORTHO05D006599 1.6e-83 313.9 278 59.7
Lsat_1_v5_gn_7_83500 Lactuca sativa HOM05D005406 ORTHO05D006599 9.8e-81 304.7 278 57.2
Sc18g0007270 Simmondsia chinensis HOM05D005406 ORTHO05D006599 1.1e-79 301.2 224 71.4
Dinv16046 Davidia involucrata HOM05D005406 ORTHO05D006599 1.4e-74 284.3 274 59.1
HPP92_019511 Vanilla planifolia HOM05D005406 ORTHO05D006599 1.4e-74 284.3 280 56.4
Os01g0767600 Oryza sativa ssp. japonica HOM05D005406 ORTHO05D006599 6.8e-74 282.0 288 55.2
Zm00001eb370180 Zea mays HOM05D005406 ORTHO05D006599 7.8e-70 268.5 267 55.4
Medtr4g134220 Medicago truncatula HOM05D005406 ORTHO05D006599 6.6e-69 265.4 300 57.7
CDE07G1368 Ceratophyllum demersum HOM05D005406 ORTHO05D006599 1.2e-65 254.6 239 57.3
ATR0767G021 Amborella trichopoda HOM05D005406 ORTHO05D006599 9.9e-65 251.5 275 51.6
GSVIVG01036961001 Vitis vinifera HOM05D005406 ORTHO05D006599 1.1e-60 238.0 167 74.9
HanXRQChr03g0075901 Helianthus annuus HOM05D005406 ORTHO05D006599 2.0e-57 227.3 250 49.6
Mapoly0020s0010 Marchantia polymorpha HOM05D005406 ORTHO05D006599 1.0e-53 214.9 304 44.1
HPP92_018788 Vanilla planifolia HOM05D005406 ORTHO05D006599 1.7e-53 214.2 294 46.6
SEGI_14450 Sequoiadendron giganteum HOM05D005406 ORTHO05D006599 1.4e-50 204.5 268 47.0
AagrBONN_evm.TU.Sc2ySwM_368.2452 Anthoceros agrestis HOM05D005406 ORTHO05D006599 9.0e-50 201.8 306 43.1
Pp3c15_22880 Physcomitrium patens HOM05D005406 ORTHO05D006599 2.9e-48 196.8 279 44.1
AagrBONN_evm.TU.Sc2ySwM_368.339 Anthoceros agrestis HOM05D005406 ORTHO05D006599 1.4e-47 194.5 272 43.4
SMO364G0576 Selaginella moellendorffii HOM05D005406 ORTHO05D006599 5.4e-47 192.6 265 44.9
HPP92_018804 Vanilla planifolia HOM05D005406 ORTHO05D006599 1.5e-41 174.5 172 58.7
Hund06489 Selenicereus undatus HOM05D005406 ORTHO05D006599 3.2e-39 166.8 187 51.3
HPP92_018708 Vanilla planifolia HOM05D005406 ORTHO05D006599 4.3e-36 156.4 288 38.2
CDE07G0437 Ceratophyllum demersum HOM05D005406 ORTHO05D006599 8.4e-32 142.1 279 36.9
MD07G1171900 Malus domestica HOM05D005406 ORTHO05D006599 2.3e-29 134.0 96 64.6
CBR_g70723 Chara braunii HOM05D005406 ORTHO05D006599 9.3e-23 112.1 155 47.1
MD02G1193100 Malus domestica HOM05D005406 ORTHO05D006599 1.3e-16 91.7 96 52.1
SGA_v2.0_scaffold20G09089 Striga asiatica HOM05D005406 ORTHO05D006599 4.2e-15 86.7 82 54.9
MBI16_g08581_MAGBIO Magnolia biondii HOM05D001279 ORTHO05D009618 7.2e-15 85.9 203 29.1
TAR381G1355 Trochodendron aralioides HOM05D001279 ORTHO05D009618 4.1e-10 70.1 255 24.7
Potri.014G036300 Populus trichocarpa HOM05D001279 ORTHO05D009618 1.2e-09 68.6 206 25.7
PSO541G2686 Papaver somniferum HOM05D001279 ORTHO05D009618 1.5e-09 68.2 218 28.0
Lj5g0026644 Lotus japonicus HOM05D001279 ORTHO05D009618 2.0e-09 67.8 256 25.0
Actinidia22594 Actinidia chinensis HOM05D001279 ORTHO05D009618 3.4e-09 67.0 196 23.5
Aqoxy6G00907 Aquilegia oxysepala HOM05D001279 ORTHO05D009618 4.5e-09 66.6 246 23.2
PSO675G6998 Papaver somniferum HOM05D001279 ORTHO05D009618 4.5e-09 66.6 219 27.9
Sabra14G0026100 Salix brachista HOM05D001279 ORTHO05D009618 4.5e-09 66.6 203 25.6
Dinv36006 Davidia involucrata HOM05D001279 ORTHO05D009618 1.0e-08 65.5 228 22.8
VMungo0647G1436 Vigna mungo HOM05D001279 ORTHO05D009618 2.2e-08 64.3 185 25.4
CSS0006181 Camellia sinensis var. sinensis HOM05D001279 ORTHO05D009618 6.5e-08 62.8 168 24.4
CSS0048007 Camellia sinensis var. sinensis HOM05D001279 ORTHO05D009618 6.5e-08 62.8 168 24.4
Dinv39351 Davidia involucrata HOM05D001279 ORTHO05D009618 6.5e-08 62.8 167 26.3
PGSC0003DMG402011681 Solanum tuberosum HOM05D001279 ORTHO05D009618 1.9e-07 61.2 257 23.0
MD08G1040400 Malus domestica HOM05D001279 ORTHO05D009618 2.5e-07 60.8 179 27.9
Nn5g29377 Nelumbo nucifera HOM05D001279 ORTHO05D009618 2.5e-07 60.8 139 26.6
Solyc04g079540.3 Solanum lycopersicum HOM05D001279 ORTHO05D009618 5.5e-07 59.7 236 23.3
Cc10_g03750 Coffea canephora HOM05D001279 ORTHO05D009618 7.2e-07 59.3 138 25.4
Thecc.08G015700 Theobroma cacao HOM05D001279 ORTHO05D009618 1.6e-06 58.2 248 23.0
Lalb_Chr22g0355261 Lupinus albus HOM05D001279 ORTHO05D009618 2.1e-06 57.8 247 22.7
HPP92_018728 Vanilla planifolia HOM05D001279 ORTHO05D009618 2.7e-06 57.4 232 25.0
Glyma.17G245800 Glycine max HOM05D001279 ORTHO05D009618 4.7e-06 56.6 140 25.7
Medtr1g021180 Medicago truncatula HOM05D001279 ORTHO05D009618 4.7e-06 56.6 184 23.9
Phvul.001G018600 Phaseolus vulgaris HOM05D001279 ORTHO05D009618 4.7e-06 56.6 137 24.1
Sopen04g033120 Solanum pennellii HOM05D001279 ORTHO05D009618 4.7e-06 56.6 236 22.5
FAN15G1316 Fragaria x ananassa HOM05D001279 ORTHO05D009618 6.1e-06 56.2 282 24.8
Eucgr.F02384 Eucalyptus grandis HOM05D001279 ORTHO05D009618 7.9e-06 55.8 220 24.5


User provided reference genes

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