Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G32640 Trifolium pratense HOM05D004882 ORTHO05D005551 0.0e+00 1200.3 673 100.0
Medtr2g010490 Medicago truncatula HOM05D004882 ORTHO05D005551 1.6e-251 872.8 739 70.6
Ca_00196_v3 Cicer arietinum L. HOM05D004882 ORTHO05D005551 8.2e-235 817.4 687 73.2
Psat1g212160 Pisum sativum HOM05D004882 ORTHO05D005551 2.3e-197 693.0 649 65.6
Lj6g0001174 Lotus japonicus HOM05D004882 ORTHO05D005551 4.3e-183 645.6 706 61.0
Glyma.13G253200 Glycine max HOM05D004882 ORTHO05D005551 2.7e-169 599.7 732 57.0
Phvul.006G198000 Phaseolus vulgaris HOM05D004882 ORTHO05D005551 2.7e-161 573.2 724 55.2
Lalb_Chr18g0060201 Lupinus albus HOM05D004882 ORTHO05D005551 1.9e-159 567.0 764 52.6
arahy.Tifrunner.gnm1.ann1.6ERH6H Arachis hypogaea HOM05D004882 ORTHO05D005551 2.6e-156 556.6 688 56.8
arahy.Tifrunner.gnm1.ann1.189H81 Arachis hypogaea HOM05D004882 ORTHO05D005551 1.3e-150 537.7 685 55.6
Glyma.15G061700 Glycine max HOM05D004882 ORTHO05D005551 1.4e-141 507.7 632 57.1
VMungo0540G0872 Vigna mungo HOM05D004882 ORTHO05D005551 7.6e-140 501.9 710 52.8
Thecc.02G034500 Theobroma cacao HOM05D004882 ORTHO05D005551 5.0e-99 366.3 718 41.8
Haze_10355 Corylus avellana HOM05D004882 ORTHO05D005551 3.2e-98 363.6 721 39.9
MD05G1112300 Malus domestica HOM05D004882 ORTHO05D005551 7.2e-98 362.5 718 40.8
FAN24G2723 Fragaria x ananassa HOM05D004882 ORTHO05D005551 9.4e-98 362.1 720 41.4
FvH4_2g02560 Fragaria vesca HOM05D004882 ORTHO05D005551 1.2e-97 361.7 720 41.4
FAN20G2896 Fragaria x ananassa HOM05D004882 ORTHO05D005551 1.6e-97 361.3 716 41.8
Manes.07G049500 Manihot esculenta HOM05D004882 ORTHO05D005551 1.4e-96 358.2 727 41.3
FAN15G2336 Fragaria x ananassa HOM05D004882 ORTHO05D005551 1.8e-96 357.8 721 41.1
Cfa004757 Carpinus fangiana HOM05D004882 ORTHO05D005551 3.7e-94 350.1 736 39.1
CiPaw.05G024800 Carya illinoinensis HOM05D004882 ORTHO05D005551 6.3e-94 349.4 724 39.1
QL11p027705 Quercus lobata HOM05D004882 ORTHO05D005551 8.3e-94 349.0 740 38.8
FAN27G0728 Fragaria x ananassa HOM05D004882 ORTHO05D005551 3.5e-92 343.6 744 38.7
Potri.009G081900 Populus trichocarpa HOM05D004882 ORTHO05D005551 1.5e-90 338.2 722 39.8
Manes.10G090200 Manihot esculenta HOM05D004882 ORTHO05D005551 1.5e-87 328.2 735 37.4
MD10G1114900 Malus domestica HOM05D004882 ORTHO05D005551 2.0e-87 327.8 712 39.5
Eucgr.I02514 Eucalyptus grandis HOM05D004882 ORTHO05D005551 6.3e-86 322.8 698 39.7
Duzib248G0647 Durio zibethinus HOM05D004882 ORTHO05D005551 2.4e-85 320.9 699 39.2
RcHm_v2.0_Chr6g0246371 Rosa chinensis HOM05D004882 ORTHO05D005551 4.5e-84 316.6 692 38.9
COL.COLO4_17832 Corchorus olitorius HOM05D004882 ORTHO05D005551 1.1e-82 312.0 561 41.4
Gorai.005G262300 Gossypium raimondii HOM05D004882 ORTHO05D005551 2.5e-82 310.8 673 40.7
Cpa.g.sc20.70 Carica papaya HOM05D004882 ORTHO05D005551 4.7e-81 306.6 748 37.6
Gohir.A03G212800 Gossypium hirsutum HOM05D004882 ORTHO05D005551 4.7e-81 306.6 700 38.7
Duzib132G0818 Durio zibethinus HOM05D004882 ORTHO05D005551 6.1e-81 306.2 679 40.2
Potri.001G287800 Populus trichocarpa HOM05D004882 ORTHO05D005551 6.1e-81 306.2 754 36.5
Prupe.8G156900 Prunus persica HOM05D004882 ORTHO05D005551 6.1e-81 306.2 540 43.3
TWI59G1177 Tripterygium wilfordii HOM05D004882 ORTHO05D005551 2.0e-79 301.2 706 38.2
CANSAT25G1117 Cannabis sativa HOM05D004882 ORTHO05D005551 8.3e-78 295.8 707 36.4
Atru.chr5.2156 Acer truncatum HOM05D004882 ORTHO05D005551 2.4e-77 294.3 726 37.1
Hma1.2p1_2001F.1_g310650 Hydrangea macrophylla HOM05D004882 ORTHO05D005551 5.6e-74 283.1 722 35.3
Rhsim11G0146400 Rhododendron simsii HOM05D004882 ORTHO05D000089 2.8e-73 280.8 728 35.2
Gohir.D02G234300 Gossypium hirsutum HOM05D004882 ORTHO05D005551 3.1e-72 277.3 567 41.8
Dinv16049 Davidia involucrata HOM05D004882 ORTHO05D005551 8.9e-72 275.8 609 38.3
Haze_10351 Corylus avellana HOM05D004882 ORTHO05D005551 3.4e-71 273.9 664 36.9
Actinidia00336 Actinidia chinensis HOM05D004882 ORTHO05D005551 5.8e-71 273.1 765 34.8
A01p20310 Brassica napus HOM05D004882 ORTHO05D005551 3.7e-70 270.4 684 37.6
Nitab4.5_0005609g0020 Nicotiana tabacum HOM05D004882 ORTHO05D005551 8.3e-70 269.2 710 35.4
Actinidia02424 Actinidia chinensis HOM05D004882 ORTHO05D005551 2.4e-69 267.7 754 34.5
Nitab4.5_0001477g0110 Nicotiana tabacum HOM05D004882 ORTHO05D005551 3.5e-68 263.8 715 34.7
TAR376G0385 Trochodendron aralioides HOM05D004882 ORTHO05D005551 1.7e-67 261.5 774 32.9
Peaxi162Scf00016g03342 Petunia axillaris HOM05D004882 ORTHO05D005551 5.0e-67 260.0 701 33.8
Ciclev10030341m.g Citrus clementina HOM05D004882 ORTHO05D005551 6.6e-67 259.6 302 54.0
CSS0002606 Camellia sinensis var. sinensis HOM05D004882 ORTHO05D005551 8.6e-67 259.2 706 34.3
Aa31LG2G13080 Aethionema arabicum HOM05D004882 ORTHO05D005551 2.5e-66 257.7 678 35.5
TAR628G0407 Trochodendron aralioides HOM05D004882 ORTHO05D005551 8.1e-65 252.7 770 34.2
CSS0027559 Camellia sinensis var. sinensis HOM05D004882 ORTHO05D005551 2.3e-64 251.1 729 34.2
Nn6g34538 Nelumbo nucifera HOM05D004882 ORTHO05D005551 3.1e-64 250.8 740 32.7
Carub.0007s2442 Capsella rubella HOM05D004882 ORTHO05D005551 6.8e-64 249.6 698 35.1
PGR142G0772 Punica granatum HOM05D004882 ORTHO05D005551 2.0e-63 248.1 679 35.8
BraA01t01961Z Brassica rapa HOM05D004882 ORTHO05D005551 3.4e-63 247.3 683 36.5
BcaC09g50433 Brassica carinata HOM05D004882 ORTHO05D005551 7.5e-63 246.1 690 35.5
Sopen01g048900 Solanum pennellii HOM05D004882 ORTHO05D005551 6.4e-62 243.0 722 33.9
AT4G17000 Arabidopsis thaliana HOM05D004882 ORTHO05D005551 1.4e-61 241.9 701 34.5
AL7G37720 Arabidopsis lyrata HOM05D004882 ORTHO05D005551 1.9e-61 241.5 709 34.6
Solyc01g106540.4 Solanum lycopersicum HOM05D004882 ORTHO05D005551 3.2e-61 240.7 721 33.7
PSO170G1497 Papaver somniferum HOM05D004882 ORTHO05D005551 4.1e-61 240.4 726 32.5
PGSC0003DMG400005123 Solanum tuberosum HOM05D004882 ORTHO05D005551 7.1e-61 239.6 724 33.7
BolC1t02498H Brassica oleracea HOM05D004882 ORTHO05D005551 9.2e-61 239.2 690 35.2
Cc02_g20370 Coffea canephora HOM05D004882 ORTHO05D005551 2.1e-60 238.0 704 34.7
C01p25470 Brassica napus HOM05D004882 ORTHO05D005551 2.7e-60 237.7 690 35.1
Thhalv10024666m.g Eutrema salsugineum HOM05D004882 ORTHO05D005551 4.6e-60 236.9 704 33.4
SalBow6G6879 Salvia bowleyana HOM05D004882 ORTHO05D005551 1.5e-58 231.9 649 35.7
Sed0010536 Sechium edule HOM05D004882 ORTHO05D005551 1.9e-58 231.5 638 33.4
Lj5C223T12 Lonicera japonica HOM05D004882 ORTHO05D005551 1.2e-57 228.8 721 34.3
MSTRG.16657 Avicennia marina HOM05D004882 ORTHO05D005551 1.6e-57 228.4 705 33.6
CsaV3_7G007510 Cucumis sativus L. HOM05D004882 ORTHO05D005551 3.6e-57 227.3 800 30.6
PSO017G3844 Papaver somniferum HOM05D004882 ORTHO05D005551 1.8e-56 224.9 729 32.4
BcaNung00137 Brassica carinata HOM05D004882 ORTHO05D005551 8.9e-56 222.6 681 34.8
HanXRQChr05g0136851 Helianthus annuus HOM05D004882 ORTHO05D005551 1.2e-55 222.2 675 33.8
Sc08g0004240 Simmondsia chinensis HOM05D004882 ORTHO05D005551 2.0e-55 221.5 516 37.0
Oeu025237.1 Olea europaea HOM05D004882 ORTHO05D005551 3.4e-55 220.7 554 35.9
Sp7g17190 Schrenkiella parvula HOM05D004882 ORTHO05D005551 9.9e-55 219.2 566 36.6
ClCG02G007390 Citrullus lanatus HOM05D004882 ORTHO05D005551 1.3e-54 218.8 670 33.6
THA.LOC104807193 Tarenaya hassleriana HOM05D004882 ORTHO05D005551 2.2e-54 218.0 666 34.2
Oeu008559.3 Olea europaea HOM05D004882 ORTHO05D005551 4.1e-53 213.8 734 29.8
Lsat_1_v5_gn_5_110520 Lactuca sativa HOM05D004882 ORTHO05D005551 3.5e-52 210.7 667 32.4
GSVIVG01036969001 Vitis vinifera HOM05D004882 ORTHO05D005551 4.6e-52 210.3 588 34.7
Migut.B00500 Erythranthe guttata HOM05D004882 ORTHO05D005551 1.7e-51 208.4 622 36.0
Sabra09G0063500 Salix brachista HOM05D004882 ORTHO05D005551 3.0e-51 207.6 729 31.7
ECA234G1559 Erigeron canadensis HOM05D004882 ORTHO05D005551 3.9e-51 207.2 696 33.0
AUR62027054 Chenopodium quinoa HOM05D004882 ORTHO05D005551 2.1e-49 201.4 527 35.7
THA.LOC104819516 Tarenaya hassleriana HOM05D004882 ORTHO05D005551 6.2e-49 199.9 321 44.5
TAR381G1068 Trochodendron aralioides HOM05D004882 ORTHO05D005551 8.1e-49 199.5 221 53.4
vmacro01917 Vaccinium macrocarpon HOM05D004882 ORTHO05D005551 4.0e-48 197.2 211 56.9
CARHR223560 Cardamine hirsuta HOM05D004882 ORTHO05D005551 5.2e-48 196.8 685 34.3
MELO3C018551.2 Cucumis melo HOM05D004882 ORTHO05D005551 5.2e-48 196.8 792 29.5
AUR62030897 Chenopodium quinoa HOM05D004882 ORTHO05D005551 2.6e-47 194.5 729 31.0
Lj9A340T57 Lonicera japonica HOM05D004882 ORTHO05D005551 1.3e-46 192.2 258 49.2
Aqoxy5G00818 Aquilegia oxysepala HOM05D004882 ORTHO05D005551 2.9e-46 191.0 830 29.0
Hund06491 Selenicereus undatus HOM05D004882 ORTHO05D005551 4.2e-45 187.2 691 31.8
Ah.01g024370 Amaranthus hybridus HOM05D004882 ORTHO05D005551 9.3e-45 186.0 746 30.3
MBI16_g35720_MAGBIO Magnolia biondii HOM05D004882 ORTHO05D005551 1.2e-44 185.7 734 29.7
DCAR_021925 Daucus carota HOM05D004882 ORTHO05D005551 1.6e-44 185.3 371 39.4
SGA_v2.0_scaffold32G12966 Striga asiatica HOM05D002023 ORTHO05D002049 7.8e-44 183.0 504 35.3
EL10Ac9g22153 Beta vulgaris HOM05D004882 ORTHO05D005551 3.0e-43 181.0 774 30.2
Sabra16G0180100 Salix brachista HOM05D004882 ORTHO05D005551 2.1e-41 174.9 715 31.0
BcaB04g18391 Brassica carinata HOM05D004882 ORTHO05D005551 3.1e-40 171.0 672 30.4
CSS0014319 Camellia sinensis var. sinensis HOM05D004882 ORTHO05D005551 3.9e-35 154.1 624 31.1
CDE01G0159 Ceratophyllum demersum HOM05D004882 ORTHO05D005551 1.9e-34 151.8 648 30.9
Duzib052G0961 Durio zibethinus HOM05D004882 ORTHO05D005551 1.9e-34 151.8 394 37.1
unitig_21.g20709 Utricularia gibba HOM05D004882 ORTHO05D005551 9.0e-32 142.9 491 29.7
Os03g0770900 Oryza sativa ssp. japonica HOM05D004882 ORTHO05D005551 9.3e-29 132.9 550 31.1
Zm00001eb058870 Zea mays HOM05D004882 ORTHO05D005551 1.3e-27 129.0 564 28.4
BcaC07g38031 Brassica carinata HOM05D004882 ORTHO05D005551 1.9e-26 125.2 629 27.2
BcaNung00136 Brassica carinata HOM05D004882 ORTHO05D005551 2.5e-26 124.8 188 46.8
RcHm_v2.0_Chr6g0246451 Rosa chinensis HOM05D004882 ORTHO05D005551 3.7e-25 120.9 74 77.0
Zm00001eb213820 Zea mays HOM05D004882 ORTHO05D005551 3.7e-25 120.9 591 29.8
RcHm_v2.0_Chr6g0246631 Rosa chinensis HOM05D004882 ORTHO05D005551 2.1e-20 105.1 119 58.8
ATR0739G125 Amborella trichopoda HOM05D004882 ORTHO05D005551 3.0e-19 101.3 725 25.1
HPP92_019572 Vanilla planifolia HOM05D004882 ORTHO05D005551 4.3e-18 97.4 77 59.7
VMungo0647G2224 Vigna mungo HOM05D004882 ORTHO05D005551 2.1e-12 78.6 146 41.1
CSS0001570 Camellia sinensis var. sinensis HOM05D004882 ORTHO05D005551 8.2e-09 66.6 149 38.9
Zm00001eb251570 Zea mays HOM05D004882 ORTHO05D005551 8.2e-09 66.6 74 50.0
Rhsim11G0146600 Rhododendron simsii HOM05D004882 ORTHO05D005551 1.1e-08 66.2 152 38.2
RcHm_v2.0_Chr6g0246641 Rosa chinensis HOM05D004882 ORTHO05D005551 6.9e-08 63.5 40 67.5
SEGI_06913 Sequoiadendron giganteum HOM05D004882 ORTHO05D005551 2.0e-07 62.0 65 47.7
SHI04902 Sapria himalayana HOM05D004882 ORTHO05D005551 2.6e-07 61.6 56 57.1
SEGI_28562 Sequoiadendron giganteum HOM05D004882 ORTHO05D005551 1.0e-06 59.7 65 44.6
HPP92_019573 Vanilla planifolia HOM05D004882 ORTHO05D005551 2.9e-06 58.2 261 31.0


User provided reference genes

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