Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G32637 Trifolium pratense HOM05D004672 ORTHO05D005732 0.0e+00 2285.4 1237 100.0
Psat1g212840 Pisum sativum HOM05D004672 ORTHO05D005732 0.0e+00 1785.8 1274 77.0
Medtr2g010110 Medicago truncatula HOM05D004672 ORTHO05D005732 0.0e+00 1756.9 1309 75.1
Ca_00181_v3 Cicer arietinum L. HOM05D004672 ORTHO05D005732 0.0e+00 1704.1 1300 73.8
Glyma.13G254600 Glycine max HOM05D004672 ORTHO05D005732 0.0e+00 1629.4 1255 71.6
Phvul.006G199700 Phaseolus vulgaris HOM05D004672 ORTHO05D005732 0.0e+00 1602.4 1303 70.0
Glyma.15G060100 Glycine max HOM05D004672 ORTHO05D005732 0.0e+00 1602.0 1221 71.9
Lalb_Chr18g0060301 Lupinus albus HOM05D004672 ORTHO05D005732 0.0e+00 1585.9 1267 69.1
VMungo0540G1852 Vigna mungo HOM05D004672 ORTHO05D005732 0.0e+00 1565.1 1296 68.3
Lj6g0005540 Lotus japonicus HOM05D004672 ORTHO05D005732 0.0e+00 1523.5 1309 67.0
arahy.Tifrunner.gnm1.ann1.BVLY6P Arachis hypogaea HOM05D004672 ORTHO05D005732 0.0e+00 1494.2 1295 64.7
arahy.Tifrunner.gnm1.ann1.GE1IDC Arachis hypogaea HOM05D004672 ORTHO05D005732 0.0e+00 1473.0 1280 64.9
CiPaw.06G160900 Carya illinoinensis HOM05D004672 ORTHO05D005732 0.0e+00 1337.4 1341 56.5
Ciclev10027696m.g Citrus clementina HOM05D004672 ORTHO05D005732 0.0e+00 1335.5 1258 59.1
Manes.10G094200 Manihot esculenta HOM05D004672 ORTHO05D005732 0.0e+00 1335.1 1306 58.0
RcHm_v2.0_Chr6g0269481 Rosa chinensis HOM05D004672 ORTHO05D005732 0.0e+00 1328.2 1211 59.8
FvH4_2g11160 Fragaria vesca HOM05D004672 ORTHO05D005732 0.0e+00 1327.8 1223 59.5
Gohir.D13G048000 Gossypium hirsutum HOM05D004672 ORTHO05D005732 0.0e+00 1313.1 1261 58.8
Thecc.02G125000 Theobroma cacao HOM05D004672 ORTHO05D005732 0.0e+00 1312.4 1263 58.3
TWI59G0488 Tripterygium wilfordii HOM05D004672 ORTHO05D005732 0.0e+00 1310.4 1199 58.7
Gorai.013G053600 Gossypium raimondii HOM05D004672 ORTHO05D005732 0.0e+00 1308.5 1261 58.8
Duzib132G0551 Durio zibethinus HOM05D004672 ORTHO05D005732 0.0e+00 1308.1 1262 58.6
MD10G1056900 Malus domestica HOM05D004672 ORTHO05D005732 0.0e+00 1306.2 1258 57.1
QL11p026607 Quercus lobata HOM05D004672 ORTHO05D005732 0.0e+00 1304.3 1340 56.8
Potri.009G079900 Populus trichocarpa HOM05D004672 ORTHO05D005732 0.0e+00 1303.9 1311 56.4
CSS0000676 Camellia sinensis var. sinensis HOM05D004672 ORTHO05D005732 0.0e+00 1298.5 1259 58.1
MD05G1049800 Malus domestica HOM05D004672 ORTHO05D005732 0.0e+00 1296.2 1221 58.3
Actinidia02411 Actinidia chinensis HOM05D004672 ORTHO05D005732 0.0e+00 1295.8 1266 57.3
Gohir.A13G049500 Gossypium hirsutum HOM05D004672 ORTHO05D005732 0.0e+00 1292.3 1268 58.1
Cfa004803 Carpinus fangiana HOM05D004672 ORTHO05D005732 0.0e+00 1288.9 1316 56.4
FAN24G1132 Fragaria x ananassa HOM05D004672 ORTHO05D005732 0.0e+00 1288.1 1223 58.4
Prupe.8G075100 Prunus persica HOM05D004672 ORTHO05D005732 0.0e+00 1285.0 1301 55.6
FAN20G2876 Fragaria x ananassa HOM05D004672 ORTHO05D005732 0.0e+00 1280.0 1218 58.1
CSS0013617 Camellia sinensis var. sinensis HOM05D004672 ORTHO05D005732 0.0e+00 1276.5 1319 55.9
Eucgr.I02582 Eucalyptus grandis HOM05D004672 ORTHO05D005732 0.0e+00 1274.2 1271 57.4
Sabra09G0061900 Salix brachista HOM05D004672 ORTHO05D005732 0.0e+00 1273.1 1285 56.4
FAN27G2619 Fragaria x ananassa HOM05D004672 ORTHO05D005732 0.0e+00 1271.9 1218 58.5
FAN15G2368 Fragaria x ananassa HOM05D004672 ORTHO05D005732 0.0e+00 1271.5 1264 56.8
Lj9C342T12 Lonicera japonica HOM05D004672 ORTHO05D005732 0.0e+00 1268.8 1279 56.5
Potri.001G285600 Populus trichocarpa HOM05D004672 ORTHO05D005732 0.0e+00 1268.4 1269 55.8
Sed0001753 Sechium edule HOM05D004672 ORTHO05D005732 0.0e+00 1261.9 1271 56.0
GSVIVG01038520001 Vitis vinifera HOM05D004672 ORTHO05D005732 0.0e+00 1258.0 1264 57.4
Sed0014665 Sechium edule HOM05D004672 ORTHO05D005732 0.0e+00 1257.3 1271 55.5
TAR628G0793 Trochodendron aralioides HOM05D004672 ORTHO05D005732 0.0e+00 1255.4 1327 54.9
MSTRG.16633 Avicennia marina HOM05D004672 ORTHO05D005732 0.0e+00 1253.4 1263 56.5
Hma1.2p1_0908F.1_g235670 Hydrangea macrophylla HOM05D004672 ORTHO05D005732 0.0e+00 1249.6 1306 55.7
CANSAT54G0310 Cannabis sativa HOM05D004672 ORTHO05D005732 0.0e+00 1246.5 1250 55.8
Hund06479 Selenicereus undatus HOM05D004672 ORTHO05D005732 0.0e+00 1246.1 1271 54.9
ClCG09G016480 Citrullus lanatus HOM05D004672 ORTHO05D005732 0.0e+00 1244.2 1287 55.4
Nn1g07286 Nelumbo nucifera HOM05D004672 ORTHO05D005732 0.0e+00 1240.3 1285 54.9
Sabra16G0178000 Salix brachista HOM05D004672 ORTHO05D005732 0.0e+00 1238.8 1314 53.5
DCAR_021895 Daucus carota HOM05D004672 ORTHO05D005732 0.0e+00 1234.9 1289 54.4
vmacro19391 Vaccinium macrocarpon HOM05D004672 ORTHO05D005732 0.0e+00 1234.2 1270 55.6
Aqoxy6G00637 Aquilegia oxysepala HOM05D004672 ORTHO05D005732 0.0e+00 1228.8 1287 55.0
Cc02_g20590 Coffea canephora HOM05D004672 ORTHO05D005732 0.0e+00 1228.4 1269 56.0
EL10Ac9g22127 Beta vulgaris HOM05D004672 ORTHO05D005732 0.0e+00 1227.2 1279 54.1
CsaV3_7G007430 Cucumis sativus L. HOM05D004672 ORTHO05D005732 0.0e+00 1222.6 1267 54.9
Haze_10395 Corylus avellana HOM05D004672 ORTHO05D005732 0.0e+00 1219.1 1380 52.8
MELO3C018559.2 Cucumis melo HOM05D004672 ORTHO05D005732 0.0e+00 1197.6 1265 53.7
CAN.G504.43 Capsicum annuum HOM05D004672 ORTHO05D005732 0.0e+00 1193.7 1314 53.2
Migut.B00522 Erythranthe guttata HOM05D004672 ORTHO05D005732 0.0e+00 1190.6 1213 55.3
PGR142G1680 Punica granatum HOM05D004672 ORTHO05D005732 0.0e+00 1189.9 1202 55.8
AUR62027080 Chenopodium quinoa HOM05D004672 ORTHO05D005732 0.0e+00 1181.8 1299 51.8
ECA240G2418 Erigeron canadensis HOM05D004672 ORTHO05D005732 0.0e+00 1180.2 1255 54.3
SalBow6G5524 Salvia bowleyana HOM05D004672 ORTHO05D005732 0.0e+00 1174.8 1217 55.2
Nitab4.5_0002335g0010 Nicotiana tabacum HOM05D004672 ORTHO05D005732 0.0e+00 1170.6 1297 52.7
AUR62030919 Chenopodium quinoa HOM05D004672 ORTHO05D005732 0.0e+00 1169.5 1264 52.3
Carub.0008s2522 Capsella rubella HOM05D004672 ORTHO05D005732 0.0e+00 1167.5 1344 51.1
Sopen01g048630 Solanum pennellii HOM05D004672 ORTHO05D005732 0.0e+00 1165.2 1190 55.6
Nitab4.5_0005163g0020 Nicotiana tabacum HOM05D004672 ORTHO05D005732 0.0e+00 1159.8 1279 52.9
THA.LOC104799703 Tarenaya hassleriana HOM05D004672 ORTHO05D005732 0.0e+00 1159.8 1222 53.8
CARHR278390 Cardamine hirsuta HOM05D004672 ORTHO05D005732 0.0e+00 1158.3 1226 54.6
Sp2g27510 Schrenkiella parvula HOM05D004672 ORTHO05D005732 0.0e+00 1157.1 1246 53.9
Thhalv10003522m.g Eutrema salsugineum HOM05D004672 ORTHO05D005732 0.0e+00 1156.7 1221 54.4
HanXRQChr03g0071051 Helianthus annuus HOM05D004672 ORTHO05D005732 0.0e+00 1156.4 1278 53.1
SGA_v2.0_scaffold83G26394 Striga asiatica HOM05D004672 ORTHO05D005732 0.0e+00 1156.4 1274 53.4
Lsat_1_v5_gn_9_113661 Lactuca sativa HOM05D004672 ORTHO05D005732 0.0e+00 1156.0 1266 53.8
Lsat_1_v5_gn_9_113760 Lactuca sativa HOM05D004672 ORTHO05D005732 0.0e+00 1156.0 1266 53.8
Solyc01g106220.4 Solanum lycopersicum HOM05D004672 ORTHO05D005732 0.0e+00 1149.8 1261 53.8
BraA06t26051Z Brassica rapa HOM05D004672 ORTHO05D005732 0.0e+00 1147.1 1237 54.5
Aa31LG1G17480 Aethionema arabicum HOM05D004672 ORTHO05D005732 0.0e+00 1144.0 1328 51.3
C03p61860 Brassica napus HOM05D004672 ORTHO05D005732 0.0e+00 1143.6 1226 54.3
BolC3t18446H Brassica oleracea HOM05D004672 ORTHO05D005732 0.0e+00 1143.6 1226 54.3
A06p31080 Brassica napus HOM05D004672 ORTHO05D005732 0.0e+00 1141.7 1228 54.6
Oeu042393.4 Olea europaea HOM05D004672 ORTHO05D005732 0.0e+00 1140.9 1290 51.5
AL8G41790 Arabidopsis lyrata HOM05D004672 ORTHO05D005732 0.0e+00 1137.1 1251 52.8
MBI16_g10454_MAGBIO Magnolia biondii HOM05D004672 ORTHO05D005732 0.0e+00 1133.6 1300 51.0
THA.LOC104818461 Tarenaya hassleriana HOM05D004672 ORTHO05D005732 0.0e+00 1129.4 1340 51.2
Oeu033795.2 Olea europaea HOM05D004672 ORTHO05D005732 0.0e+00 1106.7 1324 49.3
AT5G64420 Arabidopsis thaliana HOM05D004672 ORTHO05D005732 0.0e+00 1097.0 1319 49.8
PGSC0003DMG400010676 Solanum tuberosum HOM05D004672 ORTHO05D005732 0.0e+00 1087.4 1276 51.1
Sc06g0005830 Simmondsia chinensis HOM05D004672 ORTHO05D005732 0.0e+00 1080.9 1113 54.0
PSO478G3191 Papaver somniferum HOM05D004672 ORTHO05D005732 3.2e-309 1065.4 1285 48.6
PSO017G1610 Papaver somniferum HOM05D004672 ORTHO05D005732 2.7e-308 1062.4 1206 50.0
Duzib132G1253 Durio zibethinus HOM05D004672 ORTHO05D005732 3.2e-301 1038.9 1266 49.9
Peaxi162Scf00016g03257 Petunia axillaris HOM05D004672 ORTHO05D005732 1.3e-289 1000.3 1281 48.4
CDE05G2025 Ceratophyllum demersum HOM05D004672 ORTHO05D005732 6.7e-283 978.0 1257 45.1
Peaxi162Scf00016g03462 Petunia axillaris HOM05D004672 ORTHO05D005732 4.8e-281 971.8 1277 46.5
SHI04921 Sapria himalayana HOM05D004672 ORTHO05D005732 2.2e-278 963.0 1214 46.3
unitig_744.g24197 Utricularia gibba HOM05D004672 ORTHO05D005732 3.8e-278 962.2 1277 45.8
Nitab4.5_0005163g0030 Nicotiana tabacum HOM05D004672 ORTHO05D005732 2.7e-276 956.1 1271 46.5
HPP92_024099 Vanilla planifolia HOM05D004672 ORTHO05D005732 1.8e-275 953.4 1298 44.4
ATR0800G038 Amborella trichopoda HOM05D004672 ORTHO05D005732 2.9e-262 909.4 1213 44.4
Ah.01g024170 Amaranthus hybridus HOM05D004672 ORTHO05D005732 8.5e-262 907.9 1140 49.3
Actinidia00323 Actinidia chinensis HOM05D004672 ORTHO05D005732 1.5e-258 897.1 978 53.8
Zm00001eb231630 Zea mays HOM05D004672 ORTHO05D005732 6.3e-257 891.7 1237 44.6
Os02g0135700 Oryza sativa ssp. japonica HOM05D004672 ORTHO05D005732 1.1e-256 891.0 1256 43.0
Dinv08968 Davidia involucrata HOM05D004672 ORTHO05D005732 2.1e-252 876.7 784 61.7
Atru.chr6.1353 Acer truncatum HOM05D004672 ORTHO05D005732 1.4e-227 794.3 734 61.2
Cpa.g.sc20.40 Carica papaya HOM05D004672 ORTHO05D005732 2.0e-186 657.5 1324 36.5
SEGI_31749 Sequoiadendron giganteum HOM05D004672 ORTHO05D005732 6.0e-183 646.0 1124 36.5
Dinv16031 Davidia involucrata HOM05D004672 ORTHO05D005732 2.9e-153 547.4 462 61.7
vmacro06228 Vaccinium macrocarpon HOM05D004672 ORTHO05D005732 1.0e-137 495.7 875 41.4
Pp3c13_11570 Physcomitrium patens HOM05D004672 ORTHO05D005732 1.7e-132 478.4 1218 31.8
Atru.chr6.1354 Acer truncatum HOM05D004672 ORTHO05D005732 3.5e-130 470.7 538 53.5
Pp3c3_9940 Physcomitrium patens HOM05D004672 ORTHO05D005732 2.2e-129 468.0 1204 32.1
AagrBONN_evm.TU.Sc2ySwM_228.3115__3116 Anthoceros agrestis HOM05D004672 ORTHO05D005732 5.0e-129 466.8 1230 30.0
AagrBONN_evm.TU.Sc2ySwM_368.3324__3325 Anthoceros agrestis HOM05D004672 ORTHO05D005732 5.0e-129 466.8 1215 30.4
BcaC03g18261 Brassica carinata HOM05D004672 ORTHO05D005732 1.5e-125 455.3 641 43.7
BcaB07g29742 Brassica carinata HOM05D004672 ORTHO05D005732 9.4e-120 436.0 683 44.2
SMO358G0564 Selaginella moellendorffii HOM05D004672 ORTHO05D005732 5.5e-112 410.2 1146 29.5
Mapoly0136s0021 Marchantia polymorpha HOM05D004672 ORTHO05D005732 3.9e-105 387.5 1308 27.8
Dinv08967 Davidia involucrata HOM05D004672 ORTHO05D005732 1.5e-104 385.6 452 51.3
Dinv16032 Davidia involucrata HOM05D004672 ORTHO05D005732 2.1e-103 381.7 444 50.0
CBR_g52045 Chara braunii HOM05D004672 ORTHO05D005732 1.6e-79 302.4 1221 25.1
AL8G35270 Arabidopsis lyrata HOM05D004672 ORTHO05D005732 3.9e-73 281.2 247 61.9
C02p63340 Brassica napus HOM05D004672 ORTHO05D005732 1.9e-72 278.9 1081 27.1
BolC2t12404H Brassica oleracea HOM05D004672 ORTHO05D005732 1.7e-68 265.8 1061 26.8
Gorai.005G227500 Gossypium raimondii HOM05D004672 ORTHO05D005732 4.5e-61 241.1 572 32.2
Gohir.D02G202550 Gossypium hirsutum HOM05D004672 ORTHO05D005732 5.8e-61 240.7 574 32.8
BcaC03g18262 Brassica carinata HOM05D004672 ORTHO05D005732 2.9e-52 211.8 326 40.5
Nitab4.5_0001405g0010 Nicotiana tabacum HOM05D004672 ORTHO05D005732 9.4e-35 153.7 204 46.1
Psat5g050320 Pisum sativum HOM05D004672 ORTHO05D005732 1.8e-33 149.4 90 81.1
MCO10G087 Micromonas commoda HOM05D004672 ORTHO05D005732 1.5e-32 146.4 1039 23.1
Manes.10G093300 Manihot esculenta HOM05D004672 ORTHO05D005732 4.1e-30 138.3 141 55.3
Nitab4.5_0001405g0020 Nicotiana tabacum HOM05D004672 ORTHO05D005732 1.2e-29 136.7 127 55.9
Nitab4.5_0003026g0050 Nicotiana tabacum HOM05D004672 ORTHO05D005732 1.3e-28 133.3 384 28.6
Cre01.g012350 Chlamydomonas reinhardtii HOM05D004672 ORTHO05D005732 1.4e-25 123.2 1065 23.8
Medtr2g086320 Medicago truncatula HOM05D004672 ORTHO05D005732 1.3e-23 116.7 112 61.6
C02p63360 Brassica napus HOM05D004672 ORTHO05D005732 1.9e-19 102.8 138 44.2
Nn8g41203 Nelumbo nucifera HOM05D004672 ORTHO05D005732 1.5e-16 93.2 71 60.6
VMungo0540G1591 Vigna mungo HOM05D003578 ORTHO05D004021 1.3e-15 90.1 66 71.2
Nn2g13574 Nelumbo nucifera HOM05D004672 ORTHO05D005732 1.7e-15 89.7 61 72.1
Psat0s7528g0040 Pisum sativum HOM05D003881 ORTHO05D004343 2.2e-15 89.4 52 82.7
Psat1g034120 Pisum sativum HOM05D003881 ORTHO05D004343 2.2e-15 89.4 52 82.7
Nitab4.5_0001405g0040 Nicotiana tabacum HOM05D004672 ORTHO05D005732 1.1e-14 87.0 118 47.5
Zm00001eb156660 Zea mays HOM05D004672 ORTHO05D005732 1.4e-14 86.7 94 44.7
RcHm_v2.0_Chr1g0357401 Rosa chinensis HOM05D004672 ORTHO05D346782 5.9e-13 81.3 220 28.6
Lsat_1_v5_gn_8_42860 Lactuca sativa HOM05D004672 ORTHO05D005732 3.8e-12 78.6 75 56.0
C02p63350 Brassica napus HOM05D004672 ORTHO05D005732 8.0e-10 70.9 73 50.7
arahy.Tifrunner.gnm1.ann1.F8N9WK Arachis hypogaea HOM05D000158 ORTHO05D000197 1.8e-09 69.7 76 53.9
Solyc01g106270.1 Solanum lycopersicum HOM05D004672 ORTHO05D005732 2.3e-09 69.3 191 30.9
Glyma.11G134400 Glycine max HOM05D033723 ORTHO05D214704 8.8e-09 67.4 58 60.3
BraA02t09256Z Brassica rapa HOM05D004672 ORTHO05D005732 1.5e-08 66.6 72 48.6
Ah.01g011940 Amaranthus hybridus HOM05D004672 ORTHO05D005732 3.1e-06 58.9 40 67.5


User provided reference genes

Program Settings