Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G32608 Trifolium pratense HOM05D006434 ORTHO05D008069 1.1e-181 639.8 330 100.0
Medtr6g009400 Medicago truncatula HOM05D006434 ORTHO05D008069 3.3e-152 542.0 325 87.7
Lj2g0012157 Lotus japonicus HOM05D006434 ORTHO05D008069 5.8e-133 478.0 329 77.2
Phvul.004G023900 Phaseolus vulgaris HOM05D006434 ORTHO05D008069 1.0e-129 467.2 325 77.2
Psat1g076480 Pisum sativum HOM05D006434 ORTHO05D008069 5.8e-125 451.4 285 80.4
Glyma.13G066900 Glycine max HOM05D006434 ORTHO05D008069 7.6e-125 451.1 320 75.3
arahy.Tifrunner.gnm1.ann1.ICRE53 Arachis hypogaea HOM05D006434 ORTHO05D008069 3.0e-121 439.1 322 74.2
arahy.Tifrunner.gnm1.ann1.X2C98S Arachis hypogaea HOM05D006434 ORTHO05D008069 4.3e-120 435.3 314 74.5
VMungo0464G0451 Vigna mungo HOM05D006434 ORTHO05D008069 2.8e-119 432.6 324 74.1
Lalb_Chr21g0319131 Lupinus albus HOM05D006434 ORTHO05D008069 1.1e-115 420.6 320 71.2
GSVIVG01032566001 Vitis vinifera HOM05D006434 ORTHO05D008069 4.8e-111 405.2 321 70.1
TAR629G3263 Trochodendron aralioides HOM05D006434 ORTHO05D008069 1.8e-110 403.3 318 69.8
Cfa007492 Carpinus fangiana HOM05D006434 ORTHO05D008069 6.9e-110 401.4 297 72.4
Dinv35002 Davidia involucrata HOM05D006434 ORTHO05D008069 4.9e-108 395.2 315 68.3
Potri.001G349800 Populus trichocarpa HOM05D006434 ORTHO05D008069 7.1e-107 391.3 322 66.5
CSS0004781 Camellia sinensis var. sinensis HOM05D006434 ORTHO05D008069 1.3e-105 387.1 322 66.5
PSO161G0076 Papaver somniferum HOM05D006434 ORTHO05D008069 1.8e-105 386.7 318 65.1
PSO478G2838 Papaver somniferum HOM05D006434 ORTHO05D008069 3.0e-105 386.0 317 65.9
QL02p079411 Quercus lobata HOM05D006434 ORTHO05D008069 3.0e-105 386.0 315 69.2
CSS0040499 Camellia sinensis var. sinensis HOM05D006434 ORTHO05D008069 3.9e-105 385.6 333 64.3
Sabra16G0229200 Salix brachista HOM05D006434 ORTHO05D008069 3.9e-105 385.6 322 64.9
CAN.G1128.11 Capsicum annuum HOM05D006434 ORTHO05D008069 5.1e-105 385.2 305 67.2
Actinidia06053 Actinidia chinensis HOM05D006434 ORTHO05D008069 8.7e-105 384.4 320 65.9
PGSC0003DMG400006900 Solanum tuberosum HOM05D006434 ORTHO05D008069 5.6e-104 381.7 305 65.9
Eucgr.I01896 Eucalyptus grandis HOM05D006434 ORTHO05D008069 9.6e-104 380.9 314 66.9
Nn1g08819 Nelumbo nucifera HOM05D006434 ORTHO05D008069 2.8e-103 379.4 323 65.3
Nitab4.5_0001727g0150 Nicotiana tabacum HOM05D006434 ORTHO05D008069 2.8e-103 379.4 305 66.2
vmacro05779 Vaccinium macrocarpon HOM05D006434 ORTHO05D008069 4.8e-103 378.6 319 65.2
Rhsim10G0029400 Rhododendron simsii HOM05D006434 ORTHO05D008069 1.1e-102 377.5 321 66.7
CANSAT64G2331 Cannabis sativa HOM05D006434 ORTHO05D008069 5.3e-102 375.2 309 68.0
Solyc02g067540.3 Solanum lycopersicum HOM05D006434 ORTHO05D008069 6.9e-102 374.8 305 64.9
Sopen02g016670 Solanum pennellii HOM05D006434 ORTHO05D008069 6.9e-102 374.8 305 64.9
COL.COLO4_36989 Corchorus olitorius HOM05D006434 ORTHO05D008069 2.0e-101 373.2 321 62.3
Hma1.2p1_0136F.1_g062090 Hydrangea macrophylla HOM05D006434 ORTHO05D008069 4.5e-101 372.1 267 71.2
Sc10g0004040 Simmondsia chinensis HOM05D006434 ORTHO05D008069 4.5e-101 372.1 260 72.7
TWI56G0494 Tripterygium wilfordii HOM05D006434 ORTHO05D008069 4.5e-101 372.1 318 62.3
Sed0011674 Sechium edule HOM05D006434 ORTHO05D008069 5.8e-101 371.7 311 63.0
Duzib264G0249 Durio zibethinus HOM05D006434 ORTHO05D008069 4.9e-100 368.6 320 62.8
MELO3C021484.2 Cucumis melo HOM05D006434 ORTHO05D008069 6.5e-100 368.2 306 64.7
MD09G1042700 Malus domestica HOM05D006434 ORTHO05D008069 6.5e-100 368.2 310 65.8
Cc07_g02850 Coffea canephora HOM05D006434 ORTHO05D008069 8.4e-100 367.9 320 63.4
Aqoxy3G00846 Aquilegia oxysepala HOM05D006434 ORTHO05D008069 1.4e-99 367.1 309 63.8
Ciclev10012231m.g Citrus clementina HOM05D006434 ORTHO05D008069 1.9e-99 366.7 319 63.6
AL5G18090 Arabidopsis lyrata HOM05D006434 ORTHO05D008069 5.5e-99 365.2 317 63.1
CsaV3_5G037720 Cucumis sativus L. HOM05D006434 ORTHO05D008069 5.5e-99 365.2 312 64.7
Atru.chr8.2465 Acer truncatum HOM05D006434 ORTHO05D008069 7.1e-99 364.8 322 63.4
Manes.15G178000 Manihot esculenta HOM05D006434 ORTHO05D008069 7.1e-99 364.8 320 63.4
AUR62018326 Chenopodium quinoa HOM05D006434 ORTHO05D008069 9.3e-99 364.4 314 62.4
Thecc.04G069300 Theobroma cacao HOM05D006434 ORTHO05D008069 2.1e-98 363.2 338 61.5
Carub.0005s0699 Capsella rubella HOM05D006434 ORTHO05D008069 2.7e-98 362.8 319 63.0
Peaxi162Scf00059g00128 Petunia axillaris HOM05D006434 ORTHO05D008069 4.6e-98 362.1 328 61.0
PGR142G2438 Punica granatum HOM05D006434 ORTHO05D008069 4.6e-98 362.1 315 64.1
RcHm_v2.0_Chr2g0169691 Rosa chinensis HOM05D006434 ORTHO05D008069 5.7e-96 355.1 320 63.1
Oeu022866.3 Olea europaea HOM05D006434 ORTHO05D008069 7.4e-96 354.8 361 55.1
ATR0665G567 Amborella trichopoda HOM05D006434 ORTHO05D008069 6.2e-95 351.7 305 62.3
Lsat_1_v5_gn_4_180280 Lactuca sativa HOM05D006434 ORTHO05D008069 8.2e-95 351.3 293 65.5
Gohir.A07G216800 Gossypium hirsutum HOM05D006434 ORTHO05D008069 1.1e-94 350.9 317 61.8
Gohir.D07G223600 Gossypium hirsutum HOM05D006434 ORTHO05D008069 3.1e-94 349.4 321 61.1
Gorai.001G257900 Gossypium raimondii HOM05D006434 ORTHO05D008069 3.1e-94 349.4 321 61.1
Migut.H00876 Erythranthe guttata HOM05D006434 ORTHO05D008069 4.0e-94 349.0 322 59.9
FvH4_6g49670 Fragaria vesca HOM05D006434 ORTHO05D008069 4.0e-94 349.0 320 62.2
Aa31LG2G4610 Aethionema arabicum HOM05D006434 ORTHO05D008069 9.0e-94 347.8 281 65.1
FAN02G4063 Fragaria x ananassa HOM05D006434 ORTHO05D008069 9.0e-94 347.8 320 61.9
ECA232G4812 Erigeron canadensis HOM05D006434 ORTHO05D008069 2.0e-93 346.7 278 65.8
Glyma.19G017500 Glycine max HOM05D006434 ORTHO05D008069 2.0e-93 346.7 197 85.3
CARHR292500 Cardamine hirsuta HOM05D006434 ORTHO05D008069 2.6e-93 346.3 318 61.3
Thhalv10004634m.g Eutrema salsugineum HOM05D006434 ORTHO05D008069 2.6e-93 346.3 320 61.2
FAN05G1688 Fragaria x ananassa HOM05D006434 ORTHO05D008069 2.6e-93 346.3 318 61.9
FAN14G5872 Fragaria x ananassa HOM05D006434 ORTHO05D008069 7.6e-93 344.7 320 61.6
CiPaw.03G032300 Carya illinoinensis HOM05D006434 ORTHO05D008069 1.3e-92 344.0 288 66.3
HanXRQChr15g0488521 Helianthus annuus HOM05D006434 ORTHO05D008069 1.3e-92 344.0 259 69.1
MSTRG.23964 Avicennia marina HOM05D006434 ORTHO05D008069 2.2e-92 343.2 279 65.9
unitig_744.g24344 Utricularia gibba HOM05D006434 ORTHO05D008069 3.2e-91 339.3 275 65.1
AUR62030560 Chenopodium quinoa HOM05D006434 ORTHO05D008069 4.2e-91 339.0 326 58.3
SGA_v2.0_scaffold205G41750 Striga asiatica HOM05D006434 ORTHO05D008069 5.5e-91 338.6 311 58.8
Sp2g17230 Schrenkiella parvula HOM05D006434 ORTHO05D008069 7.1e-91 338.2 318 59.7
BcaC06g33735 Brassica carinata HOM05D006434 ORTHO05D008069 1.6e-90 337.0 316 59.2
BolC7t44265H Brassica oleracea HOM05D006434 ORTHO05D008069 2.7e-90 336.3 321 59.2
A06p40510 Brassica napus HOM05D006434 ORTHO05D008069 3.5e-90 335.9 323 60.4
C07p37520 Brassica napus HOM05D006434 ORTHO05D008069 3.5e-90 335.9 321 59.2
BraA06t26970Z Brassica rapa HOM05D006434 ORTHO05D008069 3.5e-90 335.9 323 60.4
DCAR_006717 Daucus carota HOM05D006434 ORTHO05D008069 2.3e-89 333.2 228 71.5
ClCG09G018520 Citrullus lanatus HOM05D006434 ORTHO05D008069 3.0e-89 332.8 288 62.5
THA.LOC104823923 Tarenaya hassleriana HOM05D006434 ORTHO05D008069 7.4e-88 328.2 315 58.4
CDE02G1577 Ceratophyllum demersum HOM05D006434 ORTHO05D008069 1.6e-87 327.0 303 59.7
EL10Ac2g02902 Beta vulgaris HOM05D006434 ORTHO05D008069 3.7e-87 325.9 348 55.5
Os03g0736400 Oryza sativa ssp. japonica HOM05D006434 ORTHO05D008069 8.2e-87 324.7 309 55.7
Ca_04243_v3 Cicer arietinum L. HOM05D006434 ORTHO05D008069 3.1e-86 322.8 231 71.4
HPP92_023566 Vanilla planifolia HOM05D006434 ORTHO05D008069 1.4e-83 313.9 327 55.4
Haze_14607 Corylus avellana HOM05D006434 ORTHO05D008069 3.2e-83 312.8 287 63.1
FAN09G0258 Fragaria x ananassa HOM05D006434 ORTHO05D008069 2.1e-82 310.1 305 59.0
CSS0001127 Camellia sinensis var. sinensis HOM05D006434 ORTHO05D008069 1.5e-80 303.9 212 72.2
Prupe.3G275100 Prunus persica HOM05D006434 ORTHO05D008069 2.2e-79 300.1 278 62.6
AT3G28460 Arabidopsis thaliana HOM05D006434 ORTHO05D008069 1.8e-78 297.0 287 58.2
CSS0033350 Camellia sinensis var. sinensis HOM05D006434 ORTHO05D008069 1.8e-78 297.0 210 71.9
Nitab4.5_0003431g0070 Nicotiana tabacum HOM05D006434 ORTHO05D008069 2.2e-76 290.0 176 79.0
Zm00001eb215320 Zea mays HOM05D006434 ORTHO05D008069 3.3e-72 276.2 262 55.7
Cpa.g.sc14.62 Carica papaya HOM05D006434 ORTHO05D008069 4.1e-70 269.2 176 75.0
Pp3c7_630 Physcomitrium patens HOM05D006434 ORTHO05D008069 1.7e-68 263.8 230 58.3
SalBow1G5247 Salvia bowleyana HOM05D006434 ORTHO05D008069 1.0e-65 254.6 304 49.0
AagrBONN_evm.TU.Sc2ySwM_344.3988 Anthoceros agrestis HOM05D006434 ORTHO05D008069 1.8e-65 253.8 196 62.8
Lj7A404T37 Lonicera japonica HOM05D006434 ORTHO05D008069 1.8e-65 253.8 240 60.0
SMO171G0075 Selaginella moellendorffii HOM05D006434 ORTHO05D008069 3.0e-65 253.1 205 59.5
CSS0043817 Camellia sinensis var. sinensis HOM05D006434 ORTHO05D008069 3.9e-65 252.7 180 71.1
MBI01_g13068_MAGBIO Magnolia biondii HOM05D006434 ORTHO05D008069 4.5e-61 239.2 226 58.8
Mapoly0140s0031 Marchantia polymorpha HOM05D006434 ORTHO05D008069 2.1e-58 230.3 208 54.3
Hund13291 Selenicereus undatus HOM05D006434 ORTHO05D008069 5.0e-52 209.1 241 54.8
CBR_g31858 Chara braunii HOM05D006434 ORTHO05D008069 1.5e-51 207.6 236 48.7
SEGI_25544 Sequoiadendron giganteum HOM05D006434 ORTHO05D008069 1.2e-42 177.9 165 53.3
Cre13.g566300 Chlamydomonas reinhardtii HOM05D006434 ORTHO05D008069 2.1e-42 177.2 202 45.0
PRCOL_00006620 Prasinoderma coloniale HOM05D006434 ORTHO05D008069 6.8e-41 172.2 269 37.9
SEGI_38692 Sequoiadendron giganteum HOM05D006434 ORTHO05D008069 9.2e-38 161.8 126 59.5
MCO03G139 Micromonas commoda HOM05D006434 ORTHO05D008069 5.4e-30 136.0 119 52.9
MBI01_g13070_MAGBIO Magnolia biondii HOM05D006434 ORTHO05D008069 7.0e-30 135.6 82 76.8
Solyc01g057060.1 Solanum lycopersicum HOM05D006434 ORTHO05D008069 4.6e-29 132.9 97 69.1
Sopen01g021310 Solanum pennellii HOM05D006434 ORTHO05D008069 1.5e-27 127.9 91 72.5
MD17G1044100 Malus domestica HOM05D006434 ORTHO05D008069 7.1e-22 109.0 60 88.3
TAR371G0222 Trochodendron aralioides HOM05D006434 ORTHO05D008069 5.2e-17 92.8 195 36.9
Lsat_1_v5_gn_7_34121 Lactuca sativa HOM05D006434 ORTHO05D008069 7.6e-08 62.4 37 78.4
Lj7A404T38 Lonicera japonica HOM05D006434 ORTHO05D008069 2.4e-06 57.4 134 30.6
Cpa.g.sc14.61 Carica papaya HOM05D006434 ORTHO05D008069 3.2e-06 57.0 120 40.8


User provided reference genes

Program Settings