Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G32598 Trifolium pratense HOM05D004698 ORTHO05D005699 2.6e-124 448.7 230 100.0
Medtr8g092560 Medicago truncatula HOM05D004698 ORTHO05D005699 8.5e-107 390.6 230 86.5
Lalb_Chr06g0164501 Lupinus albus HOM05D004698 ORTHO05D005699 4.3e-103 378.3 227 81.5
Ca_11410_v3 Cicer arietinum L. HOM05D004698 ORTHO05D005699 3.7e-102 375.2 226 83.6
Lalb_Chr02g0144411 Lupinus albus HOM05D004698 ORTHO05D005699 3.4e-100 368.6 228 80.3
Glyma.20G247000 Glycine max HOM05D004698 ORTHO05D005699 3.2e-98 362.1 228 79.8
Lj5g0001870 Lotus japonicus HOM05D004698 ORTHO05D005699 1.2e-97 360.1 227 80.6
Psat6g242840 Pisum sativum HOM05D004698 ORTHO05D005699 3.6e-97 358.6 228 81.1
arahy.Tifrunner.gnm1.ann1.5V818H Arachis hypogaea HOM05D004698 ORTHO05D005699 9.7e-95 350.5 231 79.2
arahy.Tifrunner.gnm1.ann1.Y8WF3A Arachis hypogaea HOM05D004698 ORTHO05D005699 9.7e-95 350.5 231 79.2
Psat2g056640 Pisum sativum HOM05D004698 ORTHO05D005699 3.7e-94 348.6 228 79.4
VMungo0720G2032 Vigna mungo HOM05D004698 ORTHO05D005699 3.7e-94 348.6 228 77.2
Phvul.007G003200 Phaseolus vulgaris HOM05D004698 ORTHO05D005699 4.1e-93 345.1 228 77.6
Aqoxy1G00174 Aquilegia oxysepala HOM05D004698 ORTHO05D005699 1.4e-90 336.7 224 75.4
Cfa009658 Carpinus fangiana HOM05D004698 ORTHO05D005699 4.2e-90 335.1 227 74.0
FAN21G3006 Fragaria x ananassa HOM05D004698 ORTHO05D005699 5.5e-90 334.7 227 74.0
Prupe.6G018000 Prunus persica HOM05D004698 ORTHO05D005699 9.4e-90 334.0 227 74.0
Thecc.09G219100 Theobroma cacao HOM05D004698 ORTHO05D005699 9.4e-90 334.0 226 76.1
MELO3C015673.2 Cucumis melo HOM05D004698 ORTHO05D005699 1.6e-89 333.2 227 71.8
MD03G1018500 Malus domestica HOM05D004698 ORTHO05D005699 2.7e-89 332.4 227 72.2
RcHm_v2.0_Chr5g0080391 Rosa chinensis HOM05D004698 ORTHO05D005699 3.6e-89 332.0 231 72.7
FvH4_3g44090 Fragaria vesca HOM05D004698 ORTHO05D005699 4.7e-89 331.6 227 73.6
CsaV3_1G042380 Cucumis sativus L. HOM05D004698 ORTHO05D005699 6.1e-89 331.3 227 71.4
Manes.14G015500 Manihot esculenta HOM05D004698 ORTHO05D005699 6.1e-89 331.3 227 74.4
Sc09g0000410 Simmondsia chinensis HOM05D004698 ORTHO05D005699 6.1e-89 331.3 228 74.1
Sed0023233 Sechium edule HOM05D004698 ORTHO05D005699 8.0e-89 330.9 224 73.7
FAN16G2726 Fragaria x ananassa HOM05D004698 ORTHO05D005699 1.0e-88 330.5 227 73.6
FAN25G1145 Fragaria x ananassa HOM05D004698 ORTHO05D005699 1.0e-88 330.5 227 73.6
FAN11G2375 Fragaria x ananassa HOM05D004698 ORTHO05D005699 1.4e-88 330.1 227 73.1
QL01p009119 Quercus lobata HOM05D004698 ORTHO05D005699 2.3e-88 329.3 226 72.6
Nn2g15650 Nelumbo nucifera HOM05D004698 ORTHO05D005699 3.0e-88 328.9 223 73.5
Atru.chr3.2431 Acer truncatum HOM05D004698 ORTHO05D005699 3.9e-88 328.6 227 73.6
Dinv08060 Davidia involucrata HOM05D004698 ORTHO05D005699 5.2e-88 328.2 228 74.6
Atru.chr3.2436 Acer truncatum HOM05D004698 ORTHO05D005699 6.7e-88 327.8 227 73.1
Duzib168G2110 Durio zibethinus HOM05D004698 ORTHO05D005699 1.1e-87 327.0 227 74.0
Ah.06g193310 Amaranthus hybridus HOM05D004698 ORTHO05D005699 1.5e-87 326.6 222 71.6
Thhalv10014585m.g Eutrema salsugineum HOM05D004698 ORTHO05D005699 2.0e-87 326.2 231 70.6
Aa31LG7G13160 Aethionema arabicum HOM05D004698 ORTHO05D005699 3.3e-87 325.5 228 68.9
CARHR193280 Cardamine hirsuta HOM05D004698 ORTHO05D005699 4.4e-87 325.1 228 70.2
Ciclev10016541m.g Citrus clementina HOM05D004698 ORTHO05D005699 7.4e-87 324.3 232 70.3
Potri.001G013700 Populus trichocarpa HOM05D004698 ORTHO05D005699 7.4e-87 324.3 227 70.9
Hund21659 Selenicereus undatus HOM05D004698 ORTHO05D005699 7.4e-87 324.3 220 73.2
Sp6g24760 Schrenkiella parvula HOM05D004698 ORTHO05D005699 1.3e-86 323.6 230 68.3
PSO339G6590 Papaver somniferum HOM05D004698 ORTHO05D005699 1.7e-86 323.2 224 71.4
Manes.06G169600 Manihot esculenta HOM05D004698 ORTHO05D005699 2.2e-86 322.8 227 73.1
Nitab4.5_0013751g0010 Nicotiana tabacum HOM05D004698 ORTHO05D005699 2.2e-86 322.8 229 68.6
TWI60G0418 Tripterygium wilfordii HOM05D004698 ORTHO05D005699 4.8e-86 321.6 227 70.9
ClCG03G013670 Citrullus lanatus HOM05D004698 ORTHO05D005699 1.1e-85 320.5 215 73.0
PGR102G0099 Punica granatum HOM05D004698 ORTHO05D005699 1.1e-85 320.5 229 70.7
Duzib150G1219 Durio zibethinus HOM05D004698 ORTHO05D005699 1.8e-85 319.7 227 72.2
THA.LOC104811123 Tarenaya hassleriana HOM05D004698 ORTHO05D005699 2.4e-85 319.3 230 69.6
Nitab4.5_0001146g0120 Nicotiana tabacum HOM05D004698 ORTHO05D005699 4.1e-85 318.5 230 67.4
BolC3t13583H Brassica oleracea HOM05D004698 ORTHO05D005699 7.0e-85 317.8 229 68.1
AUR62000051 Chenopodium quinoa HOM05D004698 ORTHO05D005699 7.0e-85 317.8 222 71.6
Gorai.013G249300 Gossypium raimondii HOM05D004698 ORTHO05D005699 7.0e-85 317.8 226 72.6
C03p11130 Brassica napus HOM05D004698 ORTHO05D005699 9.1e-85 317.4 229 68.1
Gohir.D05G069500 Gossypium hirsutum HOM05D004698 ORTHO05D005699 9.1e-85 317.4 227 71.4
AL6G31140 Arabidopsis lyrata HOM05D004698 ORTHO05D005699 1.6e-84 316.6 230 69.1
A03p09560 Brassica napus HOM05D004698 ORTHO05D005699 1.6e-84 316.6 229 67.2
BraA03t10273Z Brassica rapa HOM05D004698 ORTHO05D005699 1.6e-84 316.6 229 67.2
EL10Ac4g10324 Beta vulgaris HOM05D004698 ORTHO05D005699 2.6e-84 315.8 222 70.3
AT5G19630 Arabidopsis thaliana HOM05D004698 ORTHO05D005699 4.5e-84 315.1 230 68.3
Gohir.A13G214800 Gossypium hirsutum HOM05D004698 ORTHO05D005699 4.5e-84 315.1 226 72.1
Gorai.009G070500 Gossypium raimondii HOM05D004698 ORTHO05D005699 4.5e-84 315.1 227 70.9
Actinidia22026 Actinidia chinensis HOM05D004698 ORTHO05D005699 5.9e-84 314.7 223 69.1
Actinidia40436 Actinidia chinensis HOM05D004698 ORTHO05D005699 5.9e-84 314.7 223 68.6
Hma1.2p1_0183F.1_g080820 Hydrangea macrophylla HOM05D004698 ORTHO05D005699 5.9e-84 314.7 226 69.5
Potri.003G212400 Populus trichocarpa HOM05D004698 ORTHO05D005699 5.9e-84 314.7 227 69.2
Potri.T056064 Populus trichocarpa HOM05D004698 ORTHO05D005699 5.9e-84 314.7 227 69.2
CAN.G649.13 Capsicum annuum HOM05D004698 ORTHO05D005699 1.3e-83 313.5 227 66.5
Hund07554 Selenicereus undatus HOM05D004698 ORTHO05D005699 1.3e-83 313.5 229 69.0
BcaC03g13695 Brassica carinata HOM05D004698 ORTHO05D005699 2.2e-83 312.8 230 67.0
CDE10G0673 Ceratophyllum demersum HOM05D004698 ORTHO05D005699 2.2e-83 312.8 230 68.7
CiPaw.13G168500 Carya illinoinensis HOM05D004698 ORTHO05D005699 6.5e-83 311.2 215 72.1
ECA247G2042 Erigeron canadensis HOM05D004698 ORTHO05D005699 8.5e-83 310.8 231 68.0
BcaB01g04838 Brassica carinata HOM05D004698 ORTHO05D005699 1.1e-82 310.5 229 66.8
Eucgr.B03647 Eucalyptus grandis HOM05D004698 ORTHO05D005699 1.1e-82 310.5 230 69.1
Lsat_1_v5_gn_9_26700 Lactuca sativa HOM05D004698 ORTHO05D005699 1.5e-82 310.1 227 68.3
TAR633G2590 Trochodendron aralioides HOM05D004698 ORTHO05D005699 1.5e-82 310.1 223 71.3
PGSC0003DMG400032153 Solanum tuberosum HOM05D004698 ORTHO05D005699 3.2e-82 308.9 234 64.5
Gohir.A05G066748 Gossypium hirsutum HOM05D004698 ORTHO05D005699 4.2e-82 308.5 227 70.0
Sabra03G0155400 Salix brachista HOM05D004698 ORTHO05D005699 4.2e-82 308.5 227 68.3
AUR62019223 Chenopodium quinoa HOM05D004698 ORTHO05D005699 5.5e-82 308.1 222 70.3
Sabra03G0158600 Salix brachista HOM05D004698 ORTHO05D005699 5.5e-82 308.1 227 68.3
MD11G1019500 Malus domestica HOM05D004698 ORTHO05D005699 7.2e-82 307.8 248 65.3
Migut.K00041 Erythranthe guttata HOM05D004698 ORTHO05D005699 1.2e-81 307.0 229 67.7
Solyc01g006480.3 Solanum lycopersicum HOM05D004698 ORTHO05D005699 1.2e-81 307.0 234 65.4
Sopen01g002460 Solanum pennellii HOM05D004698 ORTHO05D005699 1.2e-81 307.0 234 65.4
Carub.0006s1798 Capsella rubella HOM05D004698 ORTHO05D005699 2.7e-81 305.8 229 66.8
SalBow1G8278 Salvia bowleyana HOM05D004698 ORTHO05D005699 6.1e-81 304.7 222 69.8
ATR0605G157 Amborella trichopoda HOM05D004698 ORTHO05D005699 1.4e-80 303.5 223 69.5
DCAR_003213 Daucus carota HOM05D004698 ORTHO05D005699 1.4e-80 303.5 224 67.9
Peaxi162Scf00403g00114 Petunia axillaris HOM05D004698 ORTHO05D005699 3.0e-80 302.4 211 69.2
MSTRG.26088 Avicennia marina HOM05D004698 ORTHO05D005699 5.2e-80 301.6 230 66.1
Lju124A28T33 Lonicera japonica HOM05D004698 ORTHO05D005699 1.2e-79 300.4 217 69.6
Os02g0717100 Oryza sativa ssp. japonica HOM05D004698 ORTHO05D005699 1.2e-79 300.4 223 67.3
COL.COLO4_10392 Corchorus olitorius HOM05D004698 ORTHO05D005699 1.3e-78 297.0 328 52.7
Zm00001eb252760 Zea mays HOM05D004698 ORTHO05D005699 1.7e-78 296.6 226 66.4
CANSAT54G0070 Cannabis sativa HOM05D004698 ORTHO05D005699 2.2e-78 296.2 218 67.4
HanXRQChr10g0300701 Helianthus annuus HOM05D004698 ORTHO05D005699 4.8e-78 295.0 227 67.8
Lj2C370G0 Lonicera japonica HOM05D004698 ORTHO05D005699 9.1e-77 290.8 229 63.8
Peaxi162Scf00258g00313 Petunia axillaris HOM05D004698 ORTHO05D005699 2.7e-76 289.3 228 64.5
SGA_v2.0_scaffold94G28426 Striga asiatica HOM05D004698 ORTHO05D005699 3.5e-76 288.9 224 63.8
SEGI_09892 Sequoiadendron giganteum HOM05D004698 ORTHO05D005699 1.0e-75 287.3 225 65.8
PGSC0003DMG400033344 Solanum tuberosum HOM05D004698 ORTHO05D005699 5.0e-75 285.0 228 63.2
unitig_0.g767 Utricularia gibba HOM05D004698 ORTHO05D005699 6.5e-75 284.6 221 62.4
Nitab4.5_0000324g0230 Nicotiana tabacum HOM05D004698 ORTHO05D005699 8.5e-75 284.3 221 64.3
Manes.08G046200 Manihot esculenta HOM05D004698 ORTHO05D005699 4.2e-74 282.0 215 63.7
Nitab4.5_0003890g0030 Nicotiana tabacum HOM05D004698 ORTHO05D005699 5.5e-74 281.6 211 65.4
Sopen03g015850 Solanum pennellii HOM05D004698 ORTHO05D005699 5.5e-74 281.6 229 62.0
Solyc03g063290.3 Solanum lycopersicum HOM05D004698 ORTHO05D005699 1.6e-73 280.0 229 61.6
Manes.08G045900 Manihot esculenta HOM05D004698 ORTHO05D005699 1.8e-72 276.6 215 62.3
AagrBONN_evm.TU.Sc2ySwM_228.4678 Anthoceros agrestis HOM05D004698 ORTHO05D005699 2.3e-72 276.2 222 60.8
BcaB05g23400 Brassica carinata HOM05D004698 ORTHO05D005699 4.0e-72 275.4 229 60.3
CAN.G364.5 Capsicum annuum HOM05D004698 ORTHO05D005699 4.0e-72 275.4 230 60.9
Sabra01G0010100 Salix brachista HOM05D004698 ORTHO05D005699 1.7e-70 270.0 359 45.1
Mapoly0046s0043 Marchantia polymorpha HOM05D004698 ORTHO05D005699 6.3e-70 268.1 222 58.1
Pp3c7_25270 Physcomitrium patens HOM05D004698 ORTHO05D005699 1.1e-69 267.3 222 58.6
vmacro07926 Vaccinium macrocarpon HOM05D004698 ORTHO05D005699 1.4e-69 266.9 261 55.6
Pp3c25_340 Physcomitrium patens HOM05D004698 ORTHO05D005699 4.5e-68 261.9 218 57.3
SMO117G0218 Selaginella moellendorffii HOM05D004698 ORTHO05D005699 4.5e-68 261.9 223 57.0
SHI30529 Sapria himalayana HOM05D004698 ORTHO05D005699 2.6e-63 246.1 221 58.8
GSVIVG01025354001 Vitis vinifera HOM05D004698 ORTHO05D005699 1.1e-61 240.7 153 75.8
MBI01_g33892_MAGBIO Magnolia biondii HOM05D004698 ORTHO05D005699 1.6e-60 236.9 183 66.7
BNapus_Darmor_BZH_scaffold_38p02250 Brassica napus HOM05D004698 ORTHO05D005699 3.9e-59 232.3 189 63.0
Cc06_g16050 Coffea canephora HOM05D004698 ORTHO05D005699 5.6e-58 228.4 153 72.5
SalBow1G8507 Salvia bowleyana HOM05D004698 ORTHO05D005699 2.0e-55 219.9 178 64.6
BolC2t06975H Brassica oleracea HOM05D004698 ORTHO05D005699 2.6e-55 219.5 189 60.3
Glyma.18G020100 Glycine max HOM05D004698 ORTHO05D005699 6.4e-54 214.9 203 59.6
TAR636G0496 Trochodendron aralioides HOM05D004698 ORTHO05D005699 1.2e-49 200.7 127 77.2
CSS0002150 Camellia sinensis var. sinensis HOM05D004698 ORTHO05D005699 2.8e-49 199.5 107 86.9
Cc01_g03800 Coffea canephora HOM05D004698 ORTHO05D005699 8.0e-49 198.0 130 75.4
Dinv36316 Davidia involucrata HOM05D004698 ORTHO05D005699 1.4e-48 197.2 145 68.3
HPP92_022782 Vanilla planifolia HOM05D004698 ORTHO05D005699 1.3e-46 190.7 169 58.0
A02p05700 Brassica napus HOM05D004698 ORTHO05D005699 1.7e-43 180.3 111 75.7
BraA02t05522Z Brassica rapa HOM05D004698 ORTHO05D005699 1.7e-43 180.3 111 75.7
Haze_23028 Corylus avellana HOM05D004698 ORTHO05D005699 5.1e-43 178.7 226 46.9
Cpa.g.sc117.1 Carica papaya HOM05D004698 ORTHO05D005699 2.8e-41 172.9 99 80.8
MD03G1017600 Malus domestica HOM05D004698 ORTHO05D005699 1.3e-38 164.1 95 81.1
Ca_11408_v3 Cicer arietinum L. HOM05D004119 ORTHO05D004797 8.6e-35 151.4 110 68.2
Manes.10G126700 Manihot esculenta HOM05D004698 ORTHO05D005699 1.9e-34 150.2 120 67.5
Nn7g36023 Nelumbo nucifera HOM05D004698 ORTHO05D005699 8.1e-33 144.8 117 64.1
PRCOL_00006777 Prasinoderma coloniale HOM05D004698 ORTHO05D005699 8.1e-33 144.8 202 36.1
Duzib170G0131 Durio zibethinus HOM05D004698 ORTHO05D005699 4.4e-31 139.0 121 62.8
Eucgr.L01569 Eucalyptus grandis HOM05D004698 ORTHO05D005699 7.1e-29 131.7 122 58.2
MD03G1115900 Malus domestica HOM05D004698 ORTHO05D005699 8.7e-27 124.8 145 47.6
RcHm_v2.0_Chr5g0080421 Rosa chinensis HOM05D004698 ORTHO05D005699 1.4e-24 117.5 83 66.3
Dinv15836 Davidia involucrata HOM05D004698 ORTHO05D005699 3.0e-19 99.8 81 60.5
Sabra16G0026900 Salix brachista HOM05D004698 ORTHO05D005699 2.5e-18 96.7 130 46.2
Potri.006G191700 Populus trichocarpa HOM05D004698 ORTHO05D005699 2.1e-12 77.0 85 48.2
RcHm_v2.0_Chr1g0343461 Rosa chinensis HOM05D004698 ORTHO05D005699 1.3e-11 74.3 57 64.9
MD03G1017500 Malus domestica HOM05D004698 ORTHO05D005699 1.6e-09 67.4 61 52.5


User provided reference genes

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